diff --git a/bin/make_cal.py b/bin/make_cal.py
deleted file mode 100755
index d6ab58fdece8071e6d6407ec43ff6d516b44b8d7..0000000000000000000000000000000000000000
--- a/bin/make_cal.py
+++ /dev/null
@@ -1,169 +0,0 @@
-#! /usr/bin/env python
-
-"""
-Usage:
- python make_cal.py OBSERVATORY YEAR
-"""
-from __future__ import print_function
-
-from datetime import datetime
-import itertools
-import json
-import os
-import sys
-import urllib.request
-
-
-############################################################################
-# CONFIGURATION
-
-# format used to output files
-# "{OBSERVATORY}" and "{YEAR}" are replaced with argument values
-FILENAME_FORMAT = "./{OBSERVATORY}{YEAR}WebAbsMaster.cal"
-
-# url for observation web service
-SERVICE_URL = "https://geomag.usgs.gov/baselines/observation.json.php"
-
-############################################################################
-# DO NOT EDIT BELOW THIS LINE
-
-
-# parse observatory and year arguments
-if len(sys.argv) != 3:
- cmd = sys.argv[0]
- print("Usage: {} OBSERVATORY YEAR".format(cmd), file=sys.stderr)
- print("Example: {} BOU 2016".format(cmd), file=sys.stderr)
- sys.exit(1)
-
-OBSERVATORY = sys.argv[1]
-YEAR = int(sys.argv[2])
-
-
-# request observations from service
-url = (
- SERVICE_URL
- + "?"
- + "&".join(
- [
- "observatory=" + OBSERVATORY,
- "starttime=" + str(YEAR) + "-01-01",
- "endtime=" + str(YEAR + 1) + "-01-01",
- ]
- )
-)
-
-try:
- print(f"Loading data from web service\n\t{url}", file=sys.stderr)
- response = urllib.request.urlopen(
- url,
- # allow environment certificate bundle override
- cafile=os.environ.get("SSL_CERT_FILE"),
- )
- data = response.read()
- observations = json.loads(data)
-except Exception as e:
- print(f"Error loading data ({e})", file=sys.stderr)
- sys.exit(1)
-
-
-# extract all valid cal values
-cals = []
-for observation in observations["data"]:
- for reading in observation["readings"]:
- for channel in ["H", "D", "Z"]:
- cal = reading[channel]
- if (
- not cal["absolute"]
- or not cal["baseline"]
- or not cal["end"]
- or not cal["start"]
- or not cal["valid"]
- ):
- # not a valid cal value
- continue
- # convert D values from degrees to minutes
- multiplier = 60 if channel == "D" else 1
- absolute = cal["absolute"] * multiplier
- baseline = cal["baseline"] * multiplier
- end = datetime.utcfromtimestamp(cal["end"])
- start = datetime.utcfromtimestamp(cal["start"])
- cals.append(
- {
- "absolute": absolute,
- "baseline": baseline,
- "channel": channel,
- "end": end,
- "start": start,
- }
- )
-
-
-# format calfile
-CAL_HEADER_FORMAT = "--{date:%Y %m %d} ({channel})"
-CAL_LINE_FORMAT = "{start:%H%M}-{end:%H%M} c{baseline:9.1f}{absolute:9.1f}"
-
-calfile = []
-# output by date in order
-cals = sorted(cals, key=lambda c: c["start"])
-# group by date
-for date, cals in itertools.groupby(cals, key=lambda c: c["start"].date()):
- # convert group to list so it can be reused
- cals = list(cals)
- # within each day, order by H, then D, then Z
- for channel in ["H", "D", "Z"]:
- channel_cals = [c for c in cals if c["channel"] == channel]
- if not channel_cals:
- # no matching values
- continue
- # add channel header
- calfile.append(CAL_HEADER_FORMAT.format(channel=channel, date=date))
- calfile.extend([CAL_LINE_FORMAT.format(**c) for c in channel_cals])
-calfile.append("")
-
-
-# write calfile
-filename = FILENAME_FORMAT.format(OBSERVATORY=OBSERVATORY, YEAR=YEAR)
-print("Writing cal file to {}".format(filename), file=sys.stderr)
-with open(filename, "wb", -1) as f:
- f.write(os.linesep.join(calfile).encode())
-
-
-"""
-CAL format example:
-- ordered by date
-- within date, order by H, then D, then Z component
-- component values order by start time
-- D component values in minutes.
-
-
---2015 03 30 (H)
-2140-2143 c 175.0 12531.3
-2152-2156 c 174.9 12533.3
-2205-2210 c 174.8 12533.1
-2220-2223 c 174.9 12520.7
---2015 03 30 (D)
-2133-2137 c 1128.3 1118.5
-2145-2149 c 1128.4 1116.4
-2159-2203 c 1128.3 1113.1
-2212-2216 c 1128.4 1113.5
---2015 03 30 (Z)
-2140-2143 c -52.9 55403.4
-2152-2156 c -52.8 55403.8
-2205-2210 c -52.8 55404.0
-2220-2223 c -52.8 55410.5
---2015 07 27 (H)
-2146-2151 c 173.5 12542.5
-2204-2210 c 173.8 12542.5
-2225-2229 c 173.8 12547.2
-2240-2246 c 173.6 12538.7
---2015 07 27 (D)
-2137-2142 c 1127.8 1109.2
-2154-2158 c 1128.3 1106.3
-2213-2220 c 1128.0 1106.3
-2232-2237 c 1128.3 1104.7
---2015 07 27 (Z)
-2146-2151 c -53.9 55382.7
-2204-2210 c -54.0 55382.5
-2225-2229 c -54.1 55383.7
-2240-2246 c -54.1 55389.0
-"""
diff --git a/geomagio/processing/make_cal.py b/geomagio/processing/make_cal.py
new file mode 100755
index 0000000000000000000000000000000000000000..c0d48381ccab3f05b2bfee3ae7f3ffdd69f46412
--- /dev/null
+++ b/geomagio/processing/make_cal.py
@@ -0,0 +1,66 @@
+#! /usr/bin/env python
+
+"""
+Usage:
+ python make_cal.py OBSERVATORY YEAR
+"""
+from __future__ import print_function
+
+from obspy import UTCDateTime
+import typer
+
+from .magproc import write_cal_file
+
+
+def main():
+ typer.run(make_cal)
+
+
+def make_cal(observatory: str, year: int):
+ write_cal_file(
+ starttime=UTCDateTime(f"{year}-01-01"),
+ endtime=UTCDateTime(f"{year+1}-01-01"),
+ observatory=observatory,
+ template="file://./{OBSERVATORY}{YEAR}WebAbsMaster.cal",
+ )
+
+
+"""
+CAL format example:
+- ordered by date
+- within date, order by H, then D, then Z component
+- component values order by start time
+- D component values in minutes.
+
+
+--2015 03 30 (H)
+2140-2143 c 175.0 12531.3
+2152-2156 c 174.9 12533.3
+2205-2210 c 174.8 12533.1
+2220-2223 c 174.9 12520.7
+--2015 03 30 (D)
+2133-2137 c 1128.3 1118.5
+2145-2149 c 1128.4 1116.4
+2159-2203 c 1128.3 1113.1
+2212-2216 c 1128.4 1113.5
+--2015 03 30 (Z)
+2140-2143 c -52.9 55403.4
+2152-2156 c -52.8 55403.8
+2205-2210 c -52.8 55404.0
+2220-2223 c -52.8 55410.5
+--2015 07 27 (H)
+2146-2151 c 173.5 12542.5
+2204-2210 c 173.8 12542.5
+2225-2229 c 173.8 12547.2
+2240-2246 c 173.6 12538.7
+--2015 07 27 (D)
+2137-2142 c 1127.8 1109.2
+2154-2158 c 1128.3 1106.3
+2213-2220 c 1128.0 1106.3
+2232-2237 c 1128.3 1104.7
+--2015 07 27 (Z)
+2146-2151 c -53.9 55382.7
+2204-2210 c -54.0 55382.5
+2225-2229 c -54.1 55383.7
+2240-2246 c -54.1 55389.0
+"""
diff --git a/poetry.lock b/poetry.lock
index 99e3d0d1174f233d754ca808937322ff8d1828aa..6500b05d3802db5881852ebcc9c84d70efd7d5fc 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -228,7 +228,7 @@ six = "*"
name = "data-science-types"
version = "0.2.23"
description = "Type stubs for Python machine learning libraries"
-category = "main"
+category = "dev"
optional = false
python-versions = ">=3.6"
@@ -477,7 +477,7 @@ python-dateutil = ">=2.7"
name = "mypy"
version = "0.910"
description = "Optional static typing for Python"
-category = "main"
+category = "dev"
optional = false
python-versions = ">=3.5"
@@ -495,17 +495,17 @@ python2 = ["typed-ast (>=1.4.0,<1.5.0)"]
name = "mypy-extensions"
version = "0.4.3"
description = "Experimental type system extensions for programs checked with the mypy typechecker."
-category = "main"
+category = "dev"
optional = false
python-versions = "*"
[[package]]
name = "numpy"
-version = "1.21.1"
+version = "1.21.2"
description = "NumPy is the fundamental package for array computing with Python."
category = "main"
optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.7,<3.11"
[[package]]
name = "obspy"
@@ -545,7 +545,7 @@ et-xmlfile = "*"
name = "openpyxl-stubs"
version = "0.1.19"
description = "Type stubs for openpyxl"
-category = "main"
+category = "dev"
optional = false
python-versions = "*"
@@ -826,7 +826,7 @@ pymysql = ["pymysql (<1)", "pymysql"]
name = "sqlalchemy-stubs"
version = "0.4"
description = "SQLAlchemy stubs and mypy plugin"
-category = "main"
+category = "dev"
optional = false
python-versions = "*"
@@ -860,7 +860,7 @@ full = ["aiofiles", "graphene", "itsdangerous", "jinja2", "python-multipart", "p
name = "toml"
version = "0.10.2"
description = "Python Library for Tom's Obvious, Minimal Language"
-category = "main"
+category = "dev"
optional = false
python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
@@ -876,7 +876,7 @@ python-versions = ">=3.6"
name = "typed-ast"
version = "1.4.3"
description = "a fork of Python 2 and 3 ast modules with type comment support"
-category = "main"
+category = "dev"
optional = false
python-versions = "*"
@@ -901,7 +901,7 @@ doc = ["mkdocs (>=1.1.2,<2.0.0)", "mkdocs-material (>=5.4.0,<6.0.0)", "markdown-
name = "types-python-dateutil"
version = "0.1.6"
description = "Typing stubs for python-dateutil"
-category = "main"
+category = "dev"
optional = false
python-versions = "*"
@@ -909,7 +909,7 @@ python-versions = "*"
name = "types-requests"
version = "2.25.6"
description = "Typing stubs for requests"
-category = "main"
+category = "dev"
optional = false
python-versions = "*"
@@ -1002,7 +1002,7 @@ testing = ["pytest (>=4.6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytes
[metadata]
lock-version = "1.1"
python-versions = "^3.7,<3.10"
-content-hash = "4780e7fcf0314de2c66305a113801662230761a7049ac6fdd5939c2925db489a"
+content-hash = "cb0b5ea4ad27b8dafe86ad166bda6bf4f1e1c55e18e04273577315dbe38038a3"
[metadata.files]
aiomysql = [
@@ -1172,8 +1172,10 @@ cryptography = [
{file = "cryptography-3.4.7-cp36-abi3-win_amd64.whl", hash = "sha256:de4e5f7f68220d92b7637fc99847475b59154b7a1b3868fb7385337af54ac9ca"},
{file = "cryptography-3.4.7-pp36-pypy36_pp73-manylinux2010_x86_64.whl", hash = "sha256:26965837447f9c82f1855e0bc8bc4fb910240b6e0d16a664bb722df3b5b06873"},
{file = "cryptography-3.4.7-pp36-pypy36_pp73-manylinux2014_x86_64.whl", hash = "sha256:eb8cc2afe8b05acbd84a43905832ec78e7b3873fb124ca190f574dca7389a87d"},
+ {file = "cryptography-3.4.7-pp37-pypy37_pp73-macosx_10_10_x86_64.whl", hash = "sha256:b01fd6f2737816cb1e08ed4807ae194404790eac7ad030b34f2ce72b332f5586"},
{file = "cryptography-3.4.7-pp37-pypy37_pp73-manylinux2010_x86_64.whl", hash = "sha256:7ec5d3b029f5fa2b179325908b9cd93db28ab7b85bb6c1db56b10e0b54235177"},
{file = "cryptography-3.4.7-pp37-pypy37_pp73-manylinux2014_x86_64.whl", hash = "sha256:ee77aa129f481be46f8d92a1a7db57269a2f23052d5f2433b4621bb457081cc9"},
+ {file = "cryptography-3.4.7-pp37-pypy37_pp73-win_amd64.whl", hash = "sha256:bf40af59ca2465b24e54f671b2de2c59257ddc4f7e5706dbd6930e26823668d3"},
{file = "cryptography-3.4.7.tar.gz", hash = "sha256:3d10de8116d25649631977cb37da6cbdd2d6fa0e0281d014a5b7d337255ca713"},
]
cycler = [
@@ -1449,34 +1451,36 @@ mypy-extensions = [
{file = "mypy_extensions-0.4.3.tar.gz", hash = "sha256:2d82818f5bb3e369420cb3c4060a7970edba416647068eb4c5343488a6c604a8"},
]
numpy = [
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obspy = [
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diff --git a/pyproject.toml b/pyproject.toml
index 21c3f8c693b8343a6f6c6bcd0d2ae044852764c6..fabac221aa34ab63097eea0ebd536af9fb9e9e23 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -63,4 +63,5 @@ generate-matrix = "geomagio.processing.affine_matrix:main"
geomag-metadata = "geomagio.metadata.main:main"
geomag-py = "geomagio.Controller:main"
magproc-prepfiles = "geomagio.processing.magproc:main"
+make-cal = "geomagio.processing.make_cal:main"
obsrio-filter = "geomagio.processing.obsrio:main"