From 51a2d3408e9a28f6ea8ff34a755c0e003f2ba6ee Mon Sep 17 00:00:00 2001
From: Jeremy Fee <jmfee@usgs.gov>
Date: Tue, 11 Feb 2020 14:54:53 -0700
Subject: [PATCH] Remove nose imports, fix warnings
---
geomagio/WebService.py | 4 +-
test/Controller_test.py | 10 +-
test/ObservatoryMetadata_test.py | 8 +-
test/TimeseriesUtility_test.py | 102 +++++++++---------
test/Util_test.py | 22 ++--
test/WebService_test.py | 60 +++++------
test/algorithm_test/AdjustedAlgorithm_test.py | 5 +-
test/algorithm_test/Algorithm_test.py | 9 +-
test/algorithm_test/AverageAlgorithm_test.py | 8 +-
test/algorithm_test/SQDistAlgorithm_test.py | 12 +--
test/algorithm_test/XYZAlgorithm_test.py | 25 +++--
test/edge_test/EdgeFactory_test.py | 44 ++++----
test/edge_test/MiniSeedFactory_test.py | 66 ++++++------
test/edge_test/RawInputClient_test.py | 6 +-
test/iaga2002_test/IAGA2002Factory_test.py | 4 +-
test/iaga2002_test/IAGA2002Parser_test.py | 12 +--
test/imfjson_test/IMFJSONWriter_test.py | 48 ++++-----
test/imfv122_test/IMFV122Parser_test.py | 70 ++++++------
test/imfv283_test/IMFV283Parser_test.py | 18 ++--
test/pcdcp_test/PCDCPFactory_test.py | 30 +++---
test/pcdcp_test/PCDCPParser_test.py | 22 ++--
21 files changed, 291 insertions(+), 294 deletions(-)
diff --git a/geomagio/WebService.py b/geomagio/WebService.py
index c40a91466..3eb658dfe 100644
--- a/geomagio/WebService.py
+++ b/geomagio/WebService.py
@@ -2,7 +2,9 @@
"""
from __future__ import print_function
-from cgi import escape, parse_qs
+from html import escape
+from urllib.parse import parse_qs
+
from collections import OrderedDict
from datetime import datetime
from json import dumps
diff --git a/test/Controller_test.py b/test/Controller_test.py
index 32caec56d..5a08eda0e 100644
--- a/test/Controller_test.py
+++ b/test/Controller_test.py
@@ -1,7 +1,6 @@
#! /usr/bin/env python
from geomagio import Controller, TimeseriesFactory
from geomagio.algorithm import Algorithm
-from nose.tools import assert_is_instance
# needed to read outputs generated by Controller and test data
from geomagio.iaga2002 import IAGA2002Factory
@@ -12,7 +11,7 @@ from shutil import copy
# needed to determine a valid (and writable) temp folder
from tempfile import gettempdir
-from numpy.testing import assert_allclose
+from numpy.testing import assert_allclose, assert_equal
from obspy.core import UTCDateTime
@@ -26,9 +25,10 @@ def test_controller():
outputfactory = TimeseriesFactory()
algorithm = Algorithm()
controller = Controller(inputfactory, outputfactory, algorithm)
- assert_is_instance(controller._inputFactory, TimeseriesFactory)
- assert_is_instance(controller._outputFactory, TimeseriesFactory)
- assert_is_instance(controller._algorithm, Algorithm)
+ assert_equal(isinstance(controller._inputFactory, TimeseriesFactory), True)
+ assert_equal(isinstance(controller._outputFactory, TimeseriesFactory),
+ True)
+ assert_equal(isinstance(controller._algorithm, Algorithm), True)
def test_controller_update_sqdist():
diff --git a/test/ObservatoryMetadata_test.py b/test/ObservatoryMetadata_test.py
index f5e37d654..bcfcd499f 100644
--- a/test/ObservatoryMetadata_test.py
+++ b/test/ObservatoryMetadata_test.py
@@ -1,7 +1,7 @@
"""Tests for ObservatoryMetadata.py"""
from geomagio import ObservatoryMetadata
-from nose.tools import assert_equals
+from numpy.testing import assert_equal
import obspy.core
@@ -59,13 +59,13 @@ def test_set_metadata():
stats.data_type = 'quasi-definitive'
observatorymetadata.set_metadata(stats, 'BOU', 'MVH',
'quasi-definitive', 'second')
- assert_equals(stats['declination_base'], 5527)
+ assert_equal(stats['declination_base'], 5527)
# Test custom metadata
stats = obspy.core.Stats()
observatorymetadata = ObservatoryMetadata(METADATA, DATA_INTERVAL_TYPE)
observatorymetadata.set_metadata(stats, 'BOU', 'MVH',
'quasi-definitive', 'second')
- assert_equals(stats['declination_base'], 20000)
+ assert_equal(stats['declination_base'], 20000)
print(stats)
- assert_equals(stats['data_interval_type'], 'Average 1-Second')
+ assert_equal(stats['data_interval_type'], 'Average 1-Second')
diff --git a/test/TimeseriesUtility_test.py b/test/TimeseriesUtility_test.py
index ec2f876e9..627393c15 100644
--- a/test/TimeseriesUtility_test.py
+++ b/test/TimeseriesUtility_test.py
@@ -1,7 +1,7 @@
#! /usr/bin/env python
from __future__ import absolute_import
-from nose.tools import assert_equals
+from numpy.testing import assert_equal
from .StreamConverter_test import __create_trace
import numpy
from geomagio import TimeseriesUtility
@@ -40,20 +40,20 @@ def test_create_empty_trace():
trace.stats.station = trace1.stats.station
trace.stats.location = location
timeseries += trace3
- assert_equals(len(trace3.data), trace3.stats.npts)
- assert_equals(timeseries[0].stats.starttime, timeseries[2].stats.starttime)
+ assert_equal(len(trace3.data), trace3.stats.npts)
+ assert_equal(timeseries[0].stats.starttime, timeseries[2].stats.starttime)
TimeseriesUtility.pad_timeseries(
timeseries=timeseries,
starttime=trace1.stats.starttime,
endtime=trace1.stats.endtime)
- assert_equals(len(trace3.data), trace3.stats.npts)
- assert_equals(timeseries[0].stats.starttime, timeseries[2].stats.starttime)
+ assert_equal(len(trace3.data), trace3.stats.npts)
+ assert_equal(timeseries[0].stats.starttime, timeseries[2].stats.starttime)
# Change starttime by more than 1 delta
starttime = trace1.stats.starttime
endtime = trace1.stats.endtime
TimeseriesUtility.pad_timeseries(timeseries, starttime - 90, endtime + 90)
- assert_equals(len(trace3.data), trace3.stats.npts)
- assert_equals(timeseries[0].stats.starttime, timeseries[2].stats.starttime)
+ assert_equal(len(trace3.data), trace3.stats.npts)
+ assert_equal(timeseries[0].stats.starttime, timeseries[2].stats.starttime)
def test_get_stream_gaps():
@@ -72,17 +72,17 @@ def test_get_stream_gaps():
trace.stats.delta = 1
# find gaps
gaps = TimeseriesUtility.get_stream_gaps(stream)
- assert_equals(len(gaps['H']), 2)
+ assert_equal(len(gaps['H']), 2)
# gap at start of H
gap = gaps['H'][0]
- assert_equals(gap[0], UTCDateTime('2015-01-01T00:00:00Z'))
- assert_equals(gap[1], UTCDateTime('2015-01-01T00:00:00Z'))
+ assert_equal(gap[0], UTCDateTime('2015-01-01T00:00:00Z'))
+ assert_equal(gap[1], UTCDateTime('2015-01-01T00:00:00Z'))
# gap at end of H
gap = gaps['H'][1]
- assert_equals(gap[0], UTCDateTime('2015-01-01T00:00:03Z'))
- assert_equals(gap[1], UTCDateTime('2015-01-01T00:00:04Z'))
+ assert_equal(gap[0], UTCDateTime('2015-01-01T00:00:03Z'))
+ assert_equal(gap[1], UTCDateTime('2015-01-01T00:00:04Z'))
# no gaps in Z channel
- assert_equals(len(gaps['Z']), 0)
+ assert_equal(len(gaps['Z']), 0)
def test_get_stream_gaps_channels():
@@ -102,8 +102,8 @@ def test_get_stream_gaps_channels():
trace.stats.delta = 1
# find gaps
gaps = TimeseriesUtility.get_stream_gaps(stream, ['Z'])
- assert_equals('H' in gaps, False)
- assert_equals(len(gaps['Z']), 0)
+ assert_equal('H' in gaps, False)
+ assert_equal(len(gaps['Z']), 0)
def test_get_trace_gaps():
@@ -118,10 +118,10 @@ def test_get_trace_gaps():
trace.stats.delta = 60
# find gap
gaps = TimeseriesUtility.get_trace_gaps(trace)
- assert_equals(len(gaps), 1)
+ assert_equal(len(gaps), 1)
gap = gaps[0]
- assert_equals(gap[0], UTCDateTime('2015-01-01T00:02:00Z'))
- assert_equals(gap[1], UTCDateTime('2015-01-01T00:03:00Z'))
+ assert_equal(gap[0], UTCDateTime('2015-01-01T00:02:00Z'))
+ assert_equal(gap[1], UTCDateTime('2015-01-01T00:03:00Z'))
def test_get_merged_gaps():
@@ -152,15 +152,15 @@ def test_get_merged_gaps():
],
]
})
- assert_equals(len(merged), 2)
+ assert_equal(len(merged), 2)
# first gap combines H and Z gaps
gap = merged[0]
- assert_equals(gap[0], UTCDateTime('2015-01-01T00:00:00Z'))
- assert_equals(gap[1], UTCDateTime('2015-01-01T00:00:03Z'))
+ assert_equal(gap[0], UTCDateTime('2015-01-01T00:00:00Z'))
+ assert_equal(gap[1], UTCDateTime('2015-01-01T00:00:03Z'))
# second gap is second Z gap
gap = merged[1]
- assert_equals(gap[0], UTCDateTime('2015-01-01T00:00:05Z'))
- assert_equals(gap[1], UTCDateTime('2015-01-01T00:00:07Z'))
+ assert_equal(gap[0], UTCDateTime('2015-01-01T00:00:05Z'))
+ assert_equal(gap[1], UTCDateTime('2015-01-01T00:00:07Z'))
def test_merge_streams():
@@ -186,14 +186,14 @@ def test_merge_streams():
trace.stats.npts = npts2
merged_streams1 = TimeseriesUtility.merge_streams(timeseries1)
# Make sure the empty 'F' was not removed from stream
- assert_equals(1, len(merged_streams1.select(channel='F')))
+ assert_equal(1, len(merged_streams1.select(channel='F')))
# Merge multiple streams with overlapping timestamps
timeseries = timeseries1 + timeseries2
merged_streams = TimeseriesUtility.merge_streams(timeseries)
- assert_equals(len(merged_streams), len(timeseries1))
- assert_equals(len(merged_streams[0]), 6)
- assert_equals(len(merged_streams[2]), 6)
+ assert_equal(len(merged_streams), len(timeseries1))
+ assert_equal(len(merged_streams[0]), 6)
+ assert_equal(len(merged_streams[2]), 6)
assert_almost_equal(
merged_streams.select(channel='H')[0].data,
[1, 1, 2, 2, 2, 2])
@@ -213,14 +213,14 @@ def test_merge_streams():
trace.stats.starttime = UTCDateTime('2018-01-01T00:00:00Z')
trace.stats.npts = npts3
merged_streams3 = TimeseriesUtility.merge_streams(timeseries3)
- assert_equals(len(timeseries3), len(merged_streams3))
+ assert_equal(len(timeseries3), len(merged_streams3))
assert_almost_equal(
timeseries3.select(channel='H')[0].data,
[1, 1, 1, 1])
- assert_equals(
+ assert_equal(
numpy.isnan(timeseries3.select(channel='E')[0].data).all(),
True)
- assert_equals(
+ assert_equal(
numpy.isnan(timeseries3.select(channel='F')[0].data).all(),
True)
@@ -230,7 +230,7 @@ def test_merge_streams():
trace11.stats.starttime = UTCDateTime('2018-01-01T00:01:00Z')
timeseries4 = Stream(traces=[trace10, trace11])
merged4 = TimeseriesUtility.merge_streams(timeseries4)
- assert_equals(len(merged4[0].data), 6)
+ assert_equal(len(merged4[0].data), 6)
assert_almost_equal(
merged4.select(channel='H')[0].data,
[1, 2, 2, 2, 1, 1])
@@ -246,68 +246,68 @@ def test_pad_timeseries():
timeseries=timeseries,
starttime=trace1.stats.starttime,
endtime=trace1.stats.endtime)
- assert_equals(len(trace1.data), len(trace2.data))
- assert_equals(trace1.stats.starttime, trace2.stats.starttime)
- assert_equals(trace1.stats.endtime, trace2.stats.endtime)
+ assert_equal(len(trace1.data), len(trace2.data))
+ assert_equal(trace1.stats.starttime, trace2.stats.starttime)
+ assert_equal(trace1.stats.endtime, trace2.stats.endtime)
# change starttime by less than 1 delta
starttime = trace1.stats.starttime
endtime = trace1.stats.endtime
TimeseriesUtility.pad_timeseries(timeseries, starttime - 30, endtime + 30)
- assert_equals(trace1.stats.starttime, starttime)
+ assert_equal(trace1.stats.starttime, starttime)
# Change starttime by more than 1 delta
TimeseriesUtility.pad_timeseries(timeseries, starttime - 90, endtime + 90)
- assert_equals(trace1.stats.starttime, starttime - 60)
- assert_equals(numpy.isnan(trace1.data[0]), numpy.isnan(numpy.NaN))
+ assert_equal(trace1.stats.starttime, starttime - 60)
+ assert_equal(numpy.isnan(trace1.data[0]), numpy.isnan(numpy.NaN))
def test_pad_and_trim_trace():
"""TimeseriesUtility_test.test_pad_and_trim_trace()
"""
trace = _create_trace([0, 1, 2, 3, 4], 'X', UTCDateTime("2018-01-01"))
- assert_equals(trace.stats.starttime, UTCDateTime("2018-01-01T00:00:00Z"))
- assert_equals(trace.stats.endtime, UTCDateTime("2018-01-01T00:04:00Z"))
+ assert_equal(trace.stats.starttime, UTCDateTime("2018-01-01T00:00:00Z"))
+ assert_equal(trace.stats.endtime, UTCDateTime("2018-01-01T00:04:00Z"))
# starttime between first and second sample
# expect first sample to be removed, start at next sample, end at same
TimeseriesUtility.pad_and_trim_trace(trace,
starttime=UTCDateTime("2018-01-01T00:00:30Z"),
endtime=trace.stats.endtime)
- assert_equals(trace.stats.starttime, UTCDateTime("2018-01-01T00:01:00Z"))
- assert_equals(trace.stats.endtime, UTCDateTime("2018-01-01T00:04:00Z"))
+ assert_equal(trace.stats.starttime, UTCDateTime("2018-01-01T00:01:00Z"))
+ assert_equal(trace.stats.endtime, UTCDateTime("2018-01-01T00:04:00Z"))
assert_array_equal(trace.data, [1, 2, 3, 4])
# endtime between last and second to last samples
TimeseriesUtility.pad_and_trim_trace(trace,
starttime=UTCDateTime("2018-01-01T00:00:30Z"),
endtime=UTCDateTime("2018-01-01T00:03:50Z"))
- assert_equals(trace.stats.starttime, UTCDateTime("2018-01-01T00:01:00Z"))
- assert_equals(trace.stats.endtime, UTCDateTime("2018-01-01T00:03:00Z"))
+ assert_equal(trace.stats.starttime, UTCDateTime("2018-01-01T00:01:00Z"))
+ assert_equal(trace.stats.endtime, UTCDateTime("2018-01-01T00:03:00Z"))
assert_array_equal(trace.data, [1, 2, 3])
# pad outward
TimeseriesUtility.pad_and_trim_trace(trace,
starttime=UTCDateTime("2018-01-01T00:00:00Z"),
endtime=UTCDateTime("2018-01-01T00:05:00Z"))
- assert_equals(trace.stats.starttime, UTCDateTime("2018-01-01T00:00:00Z"))
- assert_equals(trace.stats.endtime, UTCDateTime("2018-01-01T00:05:00Z"))
+ assert_equal(trace.stats.starttime, UTCDateTime("2018-01-01T00:00:00Z"))
+ assert_equal(trace.stats.endtime, UTCDateTime("2018-01-01T00:05:00Z"))
assert_array_equal(trace.data, [numpy.nan, 1, 2, 3, numpy.nan, numpy.nan])
# remove exactly one sample
TimeseriesUtility.pad_and_trim_trace(trace,
starttime=UTCDateTime("2018-01-01T00:00:00Z"),
endtime=UTCDateTime("2018-01-01T00:04:00Z"))
- assert_equals(trace.stats.starttime, UTCDateTime("2018-01-01T00:00:00Z"))
- assert_equals(trace.stats.endtime, UTCDateTime("2018-01-01T00:04:00Z"))
+ assert_equal(trace.stats.starttime, UTCDateTime("2018-01-01T00:00:00Z"))
+ assert_equal(trace.stats.endtime, UTCDateTime("2018-01-01T00:04:00Z"))
assert_array_equal(trace.data, [numpy.nan, 1, 2, 3, numpy.nan])
# pad start and trim end
TimeseriesUtility.pad_and_trim_trace(trace,
starttime=UTCDateTime("2017-12-31T23:58:59Z"),
endtime=UTCDateTime("2018-01-01T00:03:00Z"))
- assert_equals(trace.stats.starttime, UTCDateTime("2017-12-31T23:59:00Z"))
- assert_equals(trace.stats.endtime, UTCDateTime("2018-01-01T00:03:00Z"))
+ assert_equal(trace.stats.starttime, UTCDateTime("2017-12-31T23:59:00Z"))
+ assert_equal(trace.stats.endtime, UTCDateTime("2018-01-01T00:03:00Z"))
assert_array_equal(trace.data, [numpy.nan, numpy.nan, 1, 2, 3])
# pad end and trim start
TimeseriesUtility.pad_and_trim_trace(trace,
starttime=UTCDateTime("2018-01-01T00:00:00Z"),
endtime=UTCDateTime("2018-01-01T00:04:00Z"))
- assert_equals(trace.stats.starttime, UTCDateTime("2018-01-01T00:00:00Z"))
- assert_equals(trace.stats.endtime, UTCDateTime("2018-01-01T00:04:00Z"))
+ assert_equal(trace.stats.starttime, UTCDateTime("2018-01-01T00:00:00Z"))
+ assert_equal(trace.stats.endtime, UTCDateTime("2018-01-01T00:04:00Z"))
assert_array_equal(trace.data, [numpy.nan, 1, 2, 3, numpy.nan])
diff --git a/test/Util_test.py b/test/Util_test.py
index b84748a32..58abe4dbf 100644
--- a/test/Util_test.py
+++ b/test/Util_test.py
@@ -1,7 +1,7 @@
#! /usr/bin/env python
import os.path
import shutil
-from nose.tools import assert_equals, assert_false
+from numpy.testing import assert_equal
from geomagio import Util
from obspy.core import UTCDateTime
@@ -12,7 +12,7 @@ def test_get_file_for_url__throws_exception():
# throws exception for non "file://" urls
try:
Util.get_file_from_url('http://someserver/path')
- assert_false('expected exception')
+ assert False, ('expected exception')
except Exception:
pass
@@ -22,7 +22,7 @@ def test_get_file_for_url__parses_file_urls():
"""
# parses file urls
f = Util.get_file_from_url('file://./somefile')
- assert_equals(f, './somefile')
+ assert_equal(f, './somefile')
def test_get_file_for_url__creates_directories():
@@ -34,9 +34,9 @@ def test_get_file_for_url__creates_directories():
f = Util.get_file_from_url('file:///tmp/_geomag_algorithms_test_/somefile',
createParentDirectory=True)
if not os.path.isdir('/tmp/_geomag_algorithms_test_'):
- assert_false('directory not created')
+ assert False, ('directory not created')
shutil.rmtree('/tmp/_geomag_algorithms_test_')
- assert_equals(f, '/tmp/_geomag_algorithms_test_/somefile')
+ assert_equal(f, '/tmp/_geomag_algorithms_test_/somefile')
def test_get_interval__defaults():
@@ -45,7 +45,7 @@ def test_get_interval__defaults():
starttime = UTCDateTime('2015-01-01T00:00:00Z')
endtime = UTCDateTime('2015-02-01T00:00:00Z')
intervals = Util.get_intervals(starttime, endtime)
- assert_equals(len(intervals), 31)
+ assert_equal(len(intervals), 31)
def test_get_interval__custom_size():
@@ -54,7 +54,7 @@ def test_get_interval__custom_size():
starttime = UTCDateTime('2015-01-01T00:00:00Z')
endtime = UTCDateTime('2015-01-02T00:00:00Z')
intervals = Util.get_intervals(starttime, endtime, size=3600)
- assert_equals(len(intervals), 24)
+ assert_equal(len(intervals), 24)
def test_get_interval__negative_size():
@@ -63,9 +63,9 @@ def test_get_interval__negative_size():
starttime = UTCDateTime('2015-01-01T00:00:00Z')
endtime = UTCDateTime('2015-01-02T00:00:00Z')
intervals = Util.get_intervals(starttime, endtime, size=-1)
- assert_equals(len(intervals), 1)
- assert_equals(intervals[0]['start'], starttime)
- assert_equals(intervals[0]['end'], endtime)
+ assert_equal(len(intervals), 1)
+ assert_equal(intervals[0]['start'], starttime)
+ assert_equal(intervals[0]['end'], endtime)
def test_get_interval__trim():
@@ -74,4 +74,4 @@ def test_get_interval__trim():
starttime = UTCDateTime('2015-01-01T01:00:00Z')
endtime = UTCDateTime('2015-01-02T00:00:00Z')
intervals = Util.get_intervals(starttime, endtime, trim=True)
- assert_equals(intervals[0]['start'], starttime)
+ assert_equal(intervals[0]['start'], starttime)
diff --git a/test/WebService_test.py b/test/WebService_test.py
index 02a515515..f9f237778 100644
--- a/test/WebService_test.py
+++ b/test/WebService_test.py
@@ -1,7 +1,7 @@
"""Unit Tests for WebService"""
-from cgi import parse_qs
+from urllib.parse import parse_qs
from datetime import datetime
-from nose.tools import assert_equals, assert_is_instance, assert_raises
+from numpy.testing import assert_equal, assert_raises
import numpy
import webtest
@@ -64,7 +64,7 @@ def test__get_param():
}
assert_raises(Exception, _get_param, params, 'id', required=True)
elements = _get_param(params, 'elements')
- assert_equals(elements, 'H,E,Z,F')
+ assert_equal(elements, 'H,E,Z,F')
assert_raises(Exception, _get_param, params, 'sampling_period')
@@ -79,7 +79,7 @@ def test_fetch():
'&endtime=2016-06-07&elements=H,E,Z,F&sampling_period=60'
'&format=iaga2002&type=variation'))
timeseries = service.fetch(query)
- assert_is_instance(timeseries, Stream)
+ assert_equal(isinstance(timeseries, Stream), True)
def test_parse():
@@ -93,25 +93,25 @@ def test_parse():
query = service.parse(parse_qs('id=BOU&starttime=2016-06-06'
'&endtime=2016-06-07&elements=H,E,Z,F&sampling_period=60'
'&format=iaga2002&type=variation'))
- assert_equals(query.observatory_id, 'BOU')
- assert_equals(query.starttime, UTCDateTime(2016, 6, 6, 0))
- assert_equals(query.endtime, UTCDateTime(2016, 6, 7, 0))
- assert_equals(query.elements, ['H', 'E', 'Z', 'F'])
- assert_equals(query.sampling_period, '60')
- assert_equals(query.output_format, 'iaga2002')
- assert_equals(query.data_type, 'variation')
+ assert_equal(query.observatory_id, 'BOU')
+ assert_equal(query.starttime, UTCDateTime(2016, 6, 6, 0))
+ assert_equal(query.endtime, UTCDateTime(2016, 6, 7, 0))
+ assert_equal(query.elements, ['H', 'E', 'Z', 'F'])
+ assert_equal(query.sampling_period, '60')
+ assert_equal(query.output_format, 'iaga2002')
+ assert_equal(query.data_type, 'variation')
# Test that defaults are set for unspecified values
now = datetime.now()
today = UTCDateTime(year=now.year, month=now.month, day=now.day, hour=0)
tomorrow = today + (24 * 60 * 60 - 1)
query = service.parse(parse_qs('id=BOU'))
- assert_equals(query.observatory_id, 'BOU')
- assert_equals(query.starttime, today)
- assert_equals(query.endtime, tomorrow)
- assert_equals(query.elements, ('X', 'Y', 'Z', 'F'))
- assert_equals(query.sampling_period, '60')
- assert_equals(query.output_format, 'iaga2002')
- assert_equals(query.data_type, 'variation')
+ assert_equal(query.observatory_id, 'BOU')
+ assert_equal(query.starttime, today)
+ assert_equal(query.endtime, tomorrow)
+ assert_equal(query.elements, ('X', 'Y', 'Z', 'F'))
+ assert_equal(query.sampling_period, '60')
+ assert_equal(query.output_format, 'iaga2002')
+ assert_equal(query.data_type, 'variation')
assert_raises(Exception, service.parse, parse_qs('/?id=bad'))
@@ -124,22 +124,22 @@ def test_requests():
app = webtest.TestApp(WebService(TestFactory()))
# Check invalid request (bad values)
response = app.get('/?id=bad', expect_errors=True)
- assert_equals(response.status_int, 400)
- assert_equals(response.status, '400 Bad Request')
- assert_equals(response.content_type, 'text/plain')
+ assert_equal(response.status_int, 400)
+ assert_equal(response.status, '400 Bad Request')
+ assert_equal(response.content_type, 'text/plain')
# Check invalid request (duplicates)
response = app.get('/?id=BOU&id=BOU', expect_errors=True)
- assert_equals(response.status_int, 400)
- assert_equals(response.status, '400 Bad Request')
- assert_equals(response.content_type, 'text/plain')
+ assert_equal(response.status_int, 400)
+ assert_equal(response.status, '400 Bad Request')
+ assert_equal(response.content_type, 'text/plain')
# Check valid request (upper and lower case)
response = app.get('/?id=BOU')
- assert_equals(response.status_int, 200)
- assert_equals(response.status, '200 OK')
- assert_equals(response.content_type, 'text/plain')
+ assert_equal(response.status_int, 200)
+ assert_equal(response.status, '200 OK')
+ assert_equal(response.content_type, 'text/plain')
# Test internal server error (use fake factory)
app = webtest.TestApp(WebService(ErrorFactory(), error_stream=None))
response = app.get('/?id=BOU', expect_errors=True)
- assert_equals(response.status_int, 500)
- assert_equals(response.status, '500 Internal Server Error')
- assert_equals(response.content_type, 'text/plain')
+ assert_equal(response.status_int, 500)
+ assert_equal(response.status, '500 Internal Server Error')
+ assert_equal(response.content_type, 'text/plain')
diff --git a/test/algorithm_test/AdjustedAlgorithm_test.py b/test/algorithm_test/AdjustedAlgorithm_test.py
index 3d2944203..988dbfc84 100644
--- a/test/algorithm_test/AdjustedAlgorithm_test.py
+++ b/test/algorithm_test/AdjustedAlgorithm_test.py
@@ -1,7 +1,6 @@
from geomagio.algorithm import AdjustedAlgorithm as adj
import geomagio.iaga2002 as i2
-from nose.tools import assert_equals
-from numpy.testing import assert_almost_equal
+from numpy.testing import assert_almost_equal, assert_equal
def test_construct():
@@ -14,7 +13,7 @@ def test_construct():
assert_almost_equal(a.matrix[0, 0], 9.83427577e-01, 6)
- assert_equals(a.pier_correction, -22)
+ assert_equal(a.pier_correction, -22)
def test_process():
diff --git a/test/algorithm_test/Algorithm_test.py b/test/algorithm_test/Algorithm_test.py
index 8ce878f1d..b8e1aa9c4 100644
--- a/test/algorithm_test/Algorithm_test.py
+++ b/test/algorithm_test/Algorithm_test.py
@@ -1,7 +1,6 @@
#! /usr/bin/env python
from obspy.core.stream import Stream
-from nose.tools import assert_equals
-from nose.tools import assert_is_instance
+from numpy.testing import assert_equal
from geomagio.algorithm import Algorithm
@@ -13,7 +12,7 @@ def test_algorithm_process():
algorithm = Algorithm()
timeseries = Stream()
outputstream = algorithm.process(timeseries)
- assert_is_instance(outputstream, Stream)
+ assert_equal(isinstance(outputstream, Stream), True)
def test_algorithm_channels():
@@ -26,5 +25,5 @@ def test_algorithm_channels():
outchannels = ['H', 'D', 'Z', 'F']
algorithm = Algorithm(inchannels=inchannels,
outchannels=outchannels)
- assert_equals(algorithm.get_input_channels(), inchannels)
- assert_equals(algorithm.get_output_channels(), outchannels)
+ assert_equal(algorithm.get_input_channels(), inchannels)
+ assert_equal(algorithm.get_output_channels(), outchannels)
diff --git a/test/algorithm_test/AverageAlgorithm_test.py b/test/algorithm_test/AverageAlgorithm_test.py
index 7784b4153..d907ee044 100644
--- a/test/algorithm_test/AverageAlgorithm_test.py
+++ b/test/algorithm_test/AverageAlgorithm_test.py
@@ -2,10 +2,8 @@ from geomagio.algorithm import AverageAlgorithm
from obspy.core.stream import Stream
from ..StreamConverter_test import __create_trace
from obspy.core import UTCDateTime
-from nose.tools import assert_equals
import numpy as np
-from numpy.testing import assert_array_equal
-# from nose.tools import assert_almost_equals
+from numpy.testing import assert_array_equal, assert_equal
def test_process():
@@ -119,6 +117,6 @@ def test_metadata():
outstream = alg.process(timeseries)
# The station name should be changed to 'USGS'
- assert_equals(outstream[0].stats.station, 'USGS')
+ assert_equal(outstream[0].stats.station, 'USGS')
# The channel should be changed to 'Hdt'
- assert_equals(outstream[0].stats.channel, 'Hdt')
+ assert_equal(outstream[0].stats.channel, 'Hdt')
diff --git a/test/algorithm_test/SQDistAlgorithm_test.py b/test/algorithm_test/SQDistAlgorithm_test.py
index 48c071d81..4cbda67c4 100644
--- a/test/algorithm_test/SQDistAlgorithm_test.py
+++ b/test/algorithm_test/SQDistAlgorithm_test.py
@@ -1,10 +1,10 @@
from geomagio.algorithm import SqDistAlgorithm as sq
-from nose.tools import assert_equals
import numpy as np
-
-assert_allclose = np.testing.assert_allclose
-assert_almost_equal = np.testing.assert_almost_equal
-assert_array_less = np.testing.assert_array_less
+from numpy.testing import (
+ assert_allclose,
+ assert_almost_equal,
+ assert_array_less,
+ assert_equal)
def test_sqdistalgorithm_additive1():
@@ -158,7 +158,7 @@ def test_sqdistalgorithm_additive2():
yhat0=None, s0=s0, l0=l0, b0=b0, sigma0=sigma0)
# The output should track the input exactly on this simple series
- assert_equals(synHat000to050.all(), syn000to050.all(),
+ assert_equal(synHat000to050.all(), syn000to050.all(),
'Output of additive should match simple sinusoid exactly')
# Check max, min and average
diff --git a/test/algorithm_test/XYZAlgorithm_test.py b/test/algorithm_test/XYZAlgorithm_test.py
index 8d0857447..9e4870ed9 100644
--- a/test/algorithm_test/XYZAlgorithm_test.py
+++ b/test/algorithm_test/XYZAlgorithm_test.py
@@ -1,7 +1,6 @@
#! /usr/bin/env python
from obspy.core.stream import Stream
-from nose.tools import assert_equals
-from nose.tools import assert_is
+from numpy.testing import assert_equal
from geomagio.algorithm import XYZAlgorithm
from ..StreamConverter_test import __create_trace
import numpy as np
@@ -19,7 +18,7 @@ def test_xyzalgorithm_process():
timeseries += __create_trace('Z', [1, 1])
timeseries += __create_trace('F', [1, 1])
outputstream = algorithm.process(timeseries)
- assert_is(outputstream[0].stats.channel, 'X')
+ assert_equal(outputstream[0].stats.channel, 'X')
def test_xyzalgorithm_channels():
@@ -31,8 +30,8 @@ def test_xyzalgorithm_channels():
algorithm = XYZAlgorithm('obs', 'geo')
inchannels = ['H', 'E', 'Z', 'F']
outchannels = ['X', 'Y', 'Z', 'F']
- assert_equals(algorithm.get_input_channels(), inchannels)
- assert_equals(algorithm.get_output_channels(), outchannels)
+ assert_equal(algorithm.get_input_channels(), inchannels)
+ assert_equal(algorithm.get_output_channels(), outchannels)
def test_xyzalgorithm_limited_channels():
@@ -49,12 +48,12 @@ def test_xyzalgorithm_limited_channels():
outstream = algorithm.process(timeseries)
ds = outstream.select(channel='D')
# there is 1 trace
- assert_equals(len(ds), 1)
+ assert_equal(len(ds), 1)
d = ds[0]
# d has `count` values (same as input)
- assert_equals(len(d.data), count)
+ assert_equal(len(d.data), count)
# d has no NaN values
- assert_equals(np.isnan(d).any(), False)
+ assert_equal(np.isnan(d).any(), False)
def test_xyzalgorithm_uneccesary_channel_empty():
@@ -72,15 +71,15 @@ def test_xyzalgorithm_uneccesary_channel_empty():
timeseries += __create_trace('Z', [1, np.NaN])
timeseries += __create_trace('F', [np.NaN, np.NaN])
outstream = algorithm.process(timeseries)
- assert_equals(outstream.select(channel='Z')[0].data.all(),
+ assert_equal(outstream.select(channel='Z')[0].data.all(),
timeseries.select(channel='Z')[0].data.all())
- assert_equals(outstream.select(channel='F')[0].data.all(),
+ assert_equal(outstream.select(channel='F')[0].data.all(),
timeseries.select(channel='F')[0].data.all())
ds = outstream.select(channel='D')
# there is 1 trace
- assert_equals(len(ds), 1)
+ assert_equal(len(ds), 1)
d = ds[0]
# d has 2 values (same as input)
- assert_equals(len(d.data), 2)
+ assert_equal(len(d.data), 2)
# d has no NaN values
- assert_equals(np.isnan(d).any(), False)
+ assert_equal(np.isnan(d).any(), False)
diff --git a/test/edge_test/EdgeFactory_test.py b/test/edge_test/EdgeFactory_test.py
index e7a731d34..3b3543936 100644
--- a/test/edge_test/EdgeFactory_test.py
+++ b/test/edge_test/EdgeFactory_test.py
@@ -2,21 +2,21 @@
from obspy.core import Stream, Trace, UTCDateTime
from geomagio.edge import EdgeFactory
-from nose.tools import assert_equals
+from numpy.testing import assert_equal
def test__get_edge_network():
"""edge_test.EdgeFactory_test.test__get_edge_network()
"""
# _get_edge_network should always return NT for use by USGS geomag
- assert_equals(EdgeFactory()._get_edge_network(' ', ' ', ' ', ' '), 'NT')
+ assert_equal(EdgeFactory()._get_edge_network(' ', ' ', ' ', ' '), 'NT')
def test__get_edge_station():
"""edge_test.EdgeFactory_test.test__get_edge_station()
"""
# _get_edge_station will return the observatory code passed in.
- assert_equals(EdgeFactory()._get_edge_station('BOU', ' ', ' ', ' '), 'BOU')
+ assert_equal(EdgeFactory()._get_edge_station('BOU', ' ', ' ', ' '), 'BOU')
def test__get_edge_channel():
@@ -24,21 +24,21 @@ def test__get_edge_channel():
"""
# Call private function _get_edge_channel, make certain
# it gets back the appropriate 2 character code.
- assert_equals(EdgeFactory()._get_edge_channel('', 'D', '', 'minute'),
+ assert_equal(EdgeFactory()._get_edge_channel('', 'D', '', 'minute'),
'MVD')
- assert_equals(EdgeFactory()._get_edge_channel('', 'E', '', 'minute'),
+ assert_equal(EdgeFactory()._get_edge_channel('', 'E', '', 'minute'),
'MVE')
- assert_equals(EdgeFactory()._get_edge_channel('', 'F', '', 'minute'),
+ assert_equal(EdgeFactory()._get_edge_channel('', 'F', '', 'minute'),
'MSF')
- assert_equals(EdgeFactory()._get_edge_channel('', 'H', '', 'minute'),
+ assert_equal(EdgeFactory()._get_edge_channel('', 'H', '', 'minute'),
'MVH')
- assert_equals(EdgeFactory()._get_edge_channel('', 'DIST', '', 'minute'),
+ assert_equal(EdgeFactory()._get_edge_channel('', 'DIST', '', 'minute'),
'MDT')
- assert_equals(EdgeFactory()._get_edge_channel('', 'DST', '', 'minute'),
+ assert_equal(EdgeFactory()._get_edge_channel('', 'DST', '', 'minute'),
'MGD')
- assert_equals(EdgeFactory()._get_edge_channel('', 'E-E', '', 'minute'),
+ assert_equal(EdgeFactory()._get_edge_channel('', 'E-E', '', 'minute'),
'MQE')
- assert_equals(EdgeFactory()._get_edge_channel('', 'E-N', '', 'minute'),
+ assert_equal(EdgeFactory()._get_edge_channel('', 'E-N', '', 'minute'),
'MQN')
@@ -47,21 +47,21 @@ def test__get_edge_location():
"""
# Call _get_edge_location, make certain it returns the correct edge
# location code.
- assert_equals(EdgeFactory()._get_edge_location(
+ assert_equal(EdgeFactory()._get_edge_location(
'', '', 'variation', ''), 'R0')
- assert_equals(EdgeFactory()._get_edge_location(
+ assert_equal(EdgeFactory()._get_edge_location(
'', '', 'quasi-definitive', ''), 'Q0')
- assert_equals(EdgeFactory()._get_edge_location(
+ assert_equal(EdgeFactory()._get_edge_location(
'', '', 'definitive', ''), 'D0')
def test__get_interval_code():
"""edge_test.EdgeFactory_test.test__get_interval_code()
"""
- assert_equals(EdgeFactory()._get_interval_code('day'), 'D')
- assert_equals(EdgeFactory()._get_interval_code('hour'), 'H')
- assert_equals(EdgeFactory()._get_interval_code('minute'), 'M')
- assert_equals(EdgeFactory()._get_interval_code('second'), 'S')
+ assert_equal(EdgeFactory()._get_interval_code('day'), 'D')
+ assert_equal(EdgeFactory()._get_interval_code('hour'), 'H')
+ assert_equal(EdgeFactory()._get_interval_code('minute'), 'M')
+ assert_equal(EdgeFactory()._get_interval_code('second'), 'S')
def test__set_metadata():
@@ -73,8 +73,8 @@ def test__set_metadata():
trace2 = Trace()
stream = Stream(traces=[trace1, trace2])
EdgeFactory()._set_metadata(stream, 'BOU', 'H', 'variation', 'minute')
- assert_equals(stream[0].stats['channel'], 'H')
- assert_equals(stream[1].stats['channel'], 'H')
+ assert_equal(stream[0].stats['channel'], 'H')
+ assert_equal(stream[1].stats['channel'], 'H')
# def test_get_timeseries():
@@ -87,7 +87,7 @@ def dont_get_timeseries():
timeseries = edge_factory.get_timeseries(
UTCDateTime(2015, 3, 1, 0, 0, 0), UTCDateTime(2015, 3, 1, 1, 0, 0),
'BOU', ('H'), 'variation', 'minute')
- assert_equals(timeseries.select(channel='H')[0].stats.station,
+ assert_equal(timeseries.select(channel='H')[0].stats.station,
'BOU', 'Expect timeseries to have stats')
- assert_equals(timeseries.select(channel='H')[0].stats.channel,
+ assert_equal(timeseries.select(channel='H')[0].stats.channel,
'H', 'Expect timeseries stats channel to be equal to H')
diff --git a/test/edge_test/MiniSeedFactory_test.py b/test/edge_test/MiniSeedFactory_test.py
index 09947b84a..b37c30eae 100644
--- a/test/edge_test/MiniSeedFactory_test.py
+++ b/test/edge_test/MiniSeedFactory_test.py
@@ -1,7 +1,7 @@
"""Tests for MiniSeedFactory.py"""
-from nose.tools import assert_equals
import numpy
+from numpy.testing import assert_equal
from obspy.core import Stats, Stream, Trace, UTCDateTime
from geomagio import TimeseriesUtility
from geomagio.edge import MiniSeedFactory
@@ -11,7 +11,7 @@ def test__get_edge_network():
"""edge_test.MiniSeedFactory_test.test__get_edge_network()
"""
# _get_edge_network should always return NT for use by USGS geomag
- assert_equals(
+ assert_equal(
MiniSeedFactory()._get_edge_network(' ', ' ', ' ', ' '),
'NT')
@@ -20,7 +20,7 @@ def test__get_edge_station():
"""edge_test.MiniSeedFactory_test.test__get_edge_station()
"""
# _get_edge_station will return the observatory code passed in.
- assert_equals(
+ assert_equal(
MiniSeedFactory()._get_edge_station('BOU', ' ', ' ', ' '),
'BOU')
@@ -31,15 +31,15 @@ def test__get_edge_channel():
# Call private function _get_edge_channel, make certain
# it gets back the appropriate 2 character code.
factory = MiniSeedFactory()
- assert_equals(factory._get_edge_channel('', 'D', '', 'minute'), 'UFD')
- assert_equals(factory._get_edge_channel('', 'U', '', 'minute'), 'UFU')
- assert_equals(factory._get_edge_channel('', 'F', '', 'minute'), 'UFF')
- assert_equals(factory._get_edge_channel('', 'H', '', 'minute'), 'UFH')
- assert_equals(factory._get_edge_channel('', 'BEU', '', 'minute'), 'BEU')
- assert_equals(factory._get_edge_channel('', 'Dst4', '', 'minute'), 'UX4')
- assert_equals(factory._get_edge_channel('', 'Dst3', '', 'minute'), 'UX3')
- assert_equals(factory._get_edge_channel('', 'E-E', '', 'minute'), 'UQE')
- assert_equals(factory._get_edge_channel('', 'E-N', '', 'minute'), 'UQN')
+ assert_equal(factory._get_edge_channel('', 'D', '', 'minute'), 'UFD')
+ assert_equal(factory._get_edge_channel('', 'U', '', 'minute'), 'UFU')
+ assert_equal(factory._get_edge_channel('', 'F', '', 'minute'), 'UFF')
+ assert_equal(factory._get_edge_channel('', 'H', '', 'minute'), 'UFH')
+ assert_equal(factory._get_edge_channel('', 'BEU', '', 'minute'), 'BEU')
+ assert_equal(factory._get_edge_channel('', 'Dst4', '', 'minute'), 'UX4')
+ assert_equal(factory._get_edge_channel('', 'Dst3', '', 'minute'), 'UX3')
+ assert_equal(factory._get_edge_channel('', 'E-E', '', 'minute'), 'UQE')
+ assert_equal(factory._get_edge_channel('', 'E-N', '', 'minute'), 'UQN')
def test__get_edge_location():
@@ -47,22 +47,22 @@ def test__get_edge_location():
"""
# Call _get_edge_location, make certain it returns the correct edge
# location code.
- assert_equals(MiniSeedFactory()._get_edge_location(
+ assert_equal(MiniSeedFactory()._get_edge_location(
'', '', 'variation', ''), 'R0')
- assert_equals(MiniSeedFactory()._get_edge_location(
+ assert_equal(MiniSeedFactory()._get_edge_location(
'', '', 'quasi-definitive', ''), 'Q0')
- assert_equals(MiniSeedFactory()._get_edge_location(
+ assert_equal(MiniSeedFactory()._get_edge_location(
'', '', 'definitive', ''), 'D0')
def test__get_interval_code():
"""edge_test.MiniSeedFactory_test.test__get_interval_code()
"""
- assert_equals(MiniSeedFactory()._get_interval_code('day'), 'P')
- assert_equals(MiniSeedFactory()._get_interval_code('hour'), 'R')
- assert_equals(MiniSeedFactory()._get_interval_code('minute'), 'U')
- assert_equals(MiniSeedFactory()._get_interval_code('second'), 'L')
- assert_equals(MiniSeedFactory()._get_interval_code('tenhertz'), 'B')
+ assert_equal(MiniSeedFactory()._get_interval_code('day'), 'P')
+ assert_equal(MiniSeedFactory()._get_interval_code('hour'), 'R')
+ assert_equal(MiniSeedFactory()._get_interval_code('minute'), 'U')
+ assert_equal(MiniSeedFactory()._get_interval_code('second'), 'L')
+ assert_equal(MiniSeedFactory()._get_interval_code('tenhertz'), 'B')
class MockMiniSeedInputClient(object):
@@ -87,19 +87,19 @@ def test__put_timeseries():
factory.write_client = client
factory.put_timeseries(Stream(trace1), channels=('H'))
# put timeseries should call close when done
- assert_equals(client.close_called, True)
+ assert_equal(client.close_called, True)
# trace should be split in 2 blocks at gap
sent = client.last_sent
- assert_equals(len(sent), 2)
+ assert_equal(len(sent), 2)
# first trace includes [0...4]
- assert_equals(sent[0].stats.channel, 'LFH')
- assert_equals(len(sent[0]), 4)
- assert_equals(sent[0].stats.endtime, trace1.stats.starttime + 3)
+ assert_equal(sent[0].stats.channel, 'LFH')
+ assert_equal(len(sent[0]), 4)
+ assert_equal(sent[0].stats.endtime, trace1.stats.starttime + 3)
# second trace includes [5...9]
- assert_equals(sent[1].stats.channel, 'LFH')
- assert_equals(len(sent[1]), 5)
- assert_equals(sent[1].stats.starttime, trace1.stats.starttime + 5)
- assert_equals(sent[1].stats.endtime, trace1.stats.endtime)
+ assert_equal(sent[1].stats.channel, 'LFH')
+ assert_equal(len(sent[1]), 5)
+ assert_equal(sent[1].stats.starttime, trace1.stats.starttime + 5)
+ assert_equal(sent[1].stats.endtime, trace1.stats.endtime)
def test__set_metadata():
@@ -111,8 +111,8 @@ def test__set_metadata():
trace2 = Trace()
stream = Stream(traces=[trace1, trace2])
MiniSeedFactory()._set_metadata(stream, 'BOU', 'H', 'variation', 'minute')
- assert_equals(stream[0].stats['channel'], 'H')
- assert_equals(stream[1].stats['channel'], 'H')
+ assert_equal(stream[0].stats['channel'], 'H')
+ assert_equal(stream[1].stats['channel'], 'H')
# def test_get_timeseries():
@@ -125,9 +125,9 @@ def dont_get_timeseries():
timeseries = edge_factory.get_timeseries(
UTCDateTime(2015, 3, 1, 0, 0, 0), UTCDateTime(2015, 3, 1, 1, 0, 0),
'BOU', ('H'), 'variation', 'minute')
- assert_equals(timeseries.select(channel='H')[0].stats.station,
+ assert_equal(timeseries.select(channel='H')[0].stats.station,
'BOU', 'Expect timeseries to have stats')
- assert_equals(timeseries.select(channel='H')[0].stats.channel,
+ assert_equal(timeseries.select(channel='H')[0].stats.channel,
'H', 'Expect timeseries stats channel to be equal to H')
diff --git a/test/edge_test/RawInputClient_test.py b/test/edge_test/RawInputClient_test.py
index 60e3515e3..4d69005fa 100644
--- a/test/edge_test/RawInputClient_test.py
+++ b/test/edge_test/RawInputClient_test.py
@@ -3,7 +3,7 @@
import numpy
from obspy.core import Stats, Trace, UTCDateTime
from geomagio.edge import EdgeFactory, RawInputClient
-from nose.tools import assert_equals
+from numpy.testing import assert_equal
class MockRawInputClient(RawInputClient):
@@ -44,7 +44,7 @@ def test_raw_input_client():
trace_send = EdgeFactory()._convert_trace_to_int(trace.copy())
client.send_trace('minute', trace_send)
# verify data was sent
- assert_equals(len(client.last_send), 1)
+ assert_equal(len(client.last_send), 1)
def test__get_tag():
@@ -58,4 +58,4 @@ def test__get_tag():
station=station, channel=channel,
location=location, network=network)
tag_send = client._get_tag()
- assert_equals(tag_send is not None, True)
+ assert_equal(tag_send is not None, True)
diff --git a/test/iaga2002_test/IAGA2002Factory_test.py b/test/iaga2002_test/IAGA2002Factory_test.py
index 2929a6f96..958386960 100644
--- a/test/iaga2002_test/IAGA2002Factory_test.py
+++ b/test/iaga2002_test/IAGA2002Factory_test.py
@@ -1,6 +1,6 @@
"""Tests for IAGA2002Factory class"""
-from nose.tools import assert_equals
+from numpy.testing import assert_equal
from geomagio.iaga2002 import IAGA2002Factory
@@ -12,4 +12,4 @@ def test_parse_empty():
"""
parser = IAGA2002Factory()
stream = parser.parse_string('')
- assert_equals(len(stream), 0)
+ assert_equal(len(stream), 0)
diff --git a/test/iaga2002_test/IAGA2002Parser_test.py b/test/iaga2002_test/IAGA2002Parser_test.py
index 52172e6f4..be8148002 100644
--- a/test/iaga2002_test/IAGA2002Parser_test.py
+++ b/test/iaga2002_test/IAGA2002Parser_test.py
@@ -1,6 +1,6 @@
"""Tests for the IAGA2002 Parser class."""
-from nose.tools import assert_equals
+from numpy.testing import assert_equal
from geomagio.iaga2002 import IAGA2002Parser
@@ -50,7 +50,7 @@ def test__merge_comments():
Verify, the first and second line are merged.
"""
comments = ['line 1', 'line 2.', 'line 3']
- assert_equals(
+ assert_equal(
IAGA2002Parser()._merge_comments(comments),
['line 1 line 2.', 'line 3'])
@@ -64,7 +64,7 @@ def test__parse_header():
parser = IAGA2002Parser()
parser._parse_header(' Format ' +
'IAGA-2002 |')
- assert_equals(parser.headers['Format'], 'IAGA-2002')
+ assert_equal(parser.headers['Format'], 'IAGA-2002')
def test__parse_comment():
@@ -76,7 +76,7 @@ def test__parse_comment():
parser = IAGA2002Parser()
parser._parse_comment(' # Go to www.intermagnet.org for details on' +
' obtaining this product. |')
- assert_equals(parser.comments[-1],
+ assert_equal(parser.comments[-1],
'Go to www.intermagnet.org for details on' +
' obtaining this product.')
@@ -93,7 +93,7 @@ def test__parse_channels():
'BDT |')
parser._parse_channels('DATE TIME DOY ' +
'BDTH BDTD BDTZ BDTF |')
- assert_equals(parser.channels, ['H', 'D', 'Z', 'F'])
+ assert_equal(parser.channels, ['H', 'D', 'Z', 'F'])
def test_parse_decbas():
@@ -105,4 +105,4 @@ def test_parse_decbas():
"""
parser = IAGA2002Parser()
parser.parse(IAGA2002_EXAMPLE)
- assert_equals(parser.metadata['declination_base'], 5527)
+ assert_equal(parser.metadata['declination_base'], 5527)
diff --git a/test/imfjson_test/IMFJSONWriter_test.py b/test/imfjson_test/IMFJSONWriter_test.py
index 040284295..7f5ff92af 100644
--- a/test/imfjson_test/IMFJSONWriter_test.py
+++ b/test/imfjson_test/IMFJSONWriter_test.py
@@ -1,6 +1,6 @@
"""Tests for the IMFJSON Writer class."""
-from nose.tools import assert_equals
+from numpy.testing import assert_equal
from geomagio.iaga2002 import IAGA2002Factory
from geomagio.imfjson import IMFJSONWriter
import numpy as np
@@ -24,19 +24,19 @@ def test_metadata():
"""
writer = IMFJSONWriter()
metadata = writer._format_metadata(EXAMPLE_STATS, EXAMPLE_CHANNELS)
- assert_equals(metadata['status'], 200)
+ assert_equal(metadata['status'], 200)
# Test intermagnet parameters
intermag = metadata['intermagnet']
- assert_equals(intermag['reported_orientation'], "HDZF")
- assert_equals(intermag['sensor_orientation'], "HDZF")
- assert_equals(intermag['data_type'], "variation")
- assert_equals(intermag['sampling_period'], 60)
- assert_equals(intermag['digital_sampling_rate'], 0.01)
+ assert_equal(intermag['reported_orientation'], "HDZF")
+ assert_equal(intermag['sensor_orientation'], "HDZF")
+ assert_equal(intermag['data_type'], "variation")
+ assert_equal(intermag['sampling_period'], 60)
+ assert_equal(intermag['digital_sampling_rate'], 0.01)
# Test intermagnet-imo parameters
imo = metadata['intermagnet']['imo']
- assert_equals(imo['iaga_code'], "BOU")
- assert_equals(imo['name'], "Boulder")
- assert_equals(imo['coordinates'], [254.764, 40.137, 1682])
+ assert_equal(imo['iaga_code'], "BOU")
+ assert_equal(imo['name'], "Boulder")
+ assert_equal(imo['coordinates'], [254.764, 40.137, 1682])
def test_times():
@@ -54,7 +54,7 @@ def test_times():
test_date_times = []
for idx in range(test_day.shape[0]):
test_date_times += [test_day[idx] + "T" + test_time[idx] + "Z"]
- assert_equals(times, test_date_times)
+ assert_equal(times, test_date_times)
def test_values():
@@ -71,23 +71,23 @@ def test_values():
test_val_keys = ["id", "metadata", "values"]
for val in values:
for key, test in zip(val, test_val_keys):
- assert_equals(key, test)
- assert_equals(values[0]['id'], "H")
- assert_equals(values[1]['id'], "D")
- assert_equals(values[2]['id'], "Z")
- assert_equals(values[3]['id'], "F")
+ assert_equal(key, test)
+ assert_equal(values[0]['id'], "H")
+ assert_equal(values[1]['id'], "D")
+ assert_equal(values[2]['id'], "Z")
+ assert_equal(values[3]['id'], "F")
# Test values-metadata (need to add flags)
metadata = values[0]['metadata']
test_metadata_keys = ["element", "network", "station",
"channel", "location"]
for key, test in zip(metadata, test_metadata_keys):
- assert_equals(key, test)
- assert_equals(metadata['element'], "H")
- assert_equals(metadata['network'], "NT")
- assert_equals(metadata['station'], "BOU")
+ assert_equal(key, test)
+ assert_equal(metadata['element'], "H")
+ assert_equal(metadata['network'], "NT")
+ assert_equal(metadata['station'], "BOU")
# channels do not match H v MVH
- # assert_equals(metadata['channel'], "MVH")
- assert_equals(metadata['location'], "R0")
+ # assert_equal(metadata['channel'], "MVH")
+ assert_equal(metadata['location'], "R0")
# Test values-values
# Round to match iaga format
vals_H = np.around(values[0]['values'], 2)
@@ -95,5 +95,5 @@ def test_values():
test_val_H, test_val_D = np.loadtxt(EXAMPLE_FILE, skiprows=25,
usecols=(3, 4), unpack=True, dtype=float)
# tolist required to prevent ValueError in comparison
- assert_equals(vals_H.tolist(), test_val_H.tolist())
- assert_equals(vals_D.tolist(), test_val_D.tolist())
+ assert_equal(vals_H.tolist(), test_val_H.tolist())
+ assert_equal(vals_D.tolist(), test_val_D.tolist())
diff --git a/test/imfv122_test/IMFV122Parser_test.py b/test/imfv122_test/IMFV122Parser_test.py
index ad5a50f29..aaf591ac5 100644
--- a/test/imfv122_test/IMFV122Parser_test.py
+++ b/test/imfv122_test/IMFV122Parser_test.py
@@ -1,6 +1,6 @@
"""Tests for the IMFV122 Parser class."""
-from nose.tools import assert_equals
+from numpy.testing import assert_equal
from geomagio.imfv122 import IMFV122Parser
from obspy.core import UTCDateTime
@@ -11,14 +11,14 @@ def test_imfv122_parse_header__hour_of_day():
parser = IMFV122Parser()
parser._parse_header(
'KAK MAY0216 123 03 HDZF A KYO 05381402 000000 RRRRRRRRRRRRRRRR')
- assert_equals(parser.channels, ['H', 'D', 'Z', 'F'])
+ assert_equal(parser.channels, ['H', 'D', 'Z', 'F'])
metadata = parser.metadata
- assert_equals(metadata['declination_base'], 0)
- assert_equals(metadata['geodetic_latitude'], 53.8)
- assert_equals(metadata['geodetic_longitude'], 140.2)
- assert_equals(metadata['station'], 'KAK')
- assert_equals(parser._delta, 60)
- assert_equals(parser._nexttime, UTCDateTime('2016-05-02T03:00:00Z'))
+ assert_equal(metadata['declination_base'], 0)
+ assert_equal(metadata['geodetic_latitude'], 53.8)
+ assert_equal(metadata['geodetic_longitude'], 140.2)
+ assert_equal(metadata['station'], 'KAK')
+ assert_equal(parser._delta, 60)
+ assert_equal(parser._nexttime, UTCDateTime('2016-05-02T03:00:00Z'))
def test_imfv122_parse_header__minute_of_day():
@@ -27,14 +27,14 @@ def test_imfv122_parse_header__minute_of_day():
parser = IMFV122Parser()
parser._parse_header(
'HER JAN0116 001 0123 HDZF R EDI 12440192 -14161 DRRRRRRRRRRRRRRR')
- assert_equals(parser.channels, ['H', 'D', 'Z', 'F'])
+ assert_equal(parser.channels, ['H', 'D', 'Z', 'F'])
metadata = parser.metadata
- assert_equals(metadata['declination_base'], -14161)
- assert_equals(metadata['geodetic_latitude'], 124.4)
- assert_equals(metadata['geodetic_longitude'], 19.2)
- assert_equals(metadata['station'], 'HER')
- assert_equals(parser._delta, 60)
- assert_equals(parser._nexttime, UTCDateTime('2016-01-01T02:03:00Z'))
+ assert_equal(metadata['declination_base'], -14161)
+ assert_equal(metadata['geodetic_latitude'], 124.4)
+ assert_equal(metadata['geodetic_longitude'], 19.2)
+ assert_equal(metadata['station'], 'HER')
+ assert_equal(parser._delta, 60)
+ assert_equal(parser._nexttime, UTCDateTime('2016-01-01T02:03:00Z'))
def test_imfv122_parse_data():
@@ -46,16 +46,16 @@ def test_imfv122_parse_data():
parser._parse_data('1234 5678 9101 1121 3141 5161 7181 9202')
import pprint
pprint.pprint(parser._parsedata)
- assert_equals(parser._parsedata[0][0], UTCDateTime('2016-01-01T02:03:00Z'))
- assert_equals(parser._parsedata[1][0], '1234')
- assert_equals(parser._parsedata[2][0], '5678')
- assert_equals(parser._parsedata[3][0], '9101')
- assert_equals(parser._parsedata[4][0], '1121')
- assert_equals(parser._parsedata[0][1], UTCDateTime('2016-01-01T02:04:00Z'))
- assert_equals(parser._parsedata[1][1], '3141')
- assert_equals(parser._parsedata[2][1], '5161')
- assert_equals(parser._parsedata[3][1], '7181')
- assert_equals(parser._parsedata[4][1], '9202')
+ assert_equal(parser._parsedata[0][0], UTCDateTime('2016-01-01T02:03:00Z'))
+ assert_equal(parser._parsedata[1][0], '1234')
+ assert_equal(parser._parsedata[2][0], '5678')
+ assert_equal(parser._parsedata[3][0], '9101')
+ assert_equal(parser._parsedata[4][0], '1121')
+ assert_equal(parser._parsedata[0][1], UTCDateTime('2016-01-01T02:04:00Z'))
+ assert_equal(parser._parsedata[1][1], '3141')
+ assert_equal(parser._parsedata[2][1], '5161')
+ assert_equal(parser._parsedata[3][1], '7181')
+ assert_equal(parser._parsedata[4][1], '9202')
def test_imfv122_post_process():
@@ -66,13 +66,13 @@ def test_imfv122_post_process():
'HER JAN0116 001 0123 HDZF R EDI 12440192 -14161 DRRRRRRRRRRRRRRR')
parser._parse_data('1234 5678 9101 1121 3141 5161 7181 9202')
parser._post_process()
- assert_equals(parser.times[0], UTCDateTime('2016-01-01T02:03:00Z'))
- assert_equals(parser.data['H'][0], 123.4)
- assert_equals(parser.data['D'][0], 56.78)
- assert_equals(parser.data['Z'][0], 910.1)
- assert_equals(parser.data['F'][0], 112.1)
- assert_equals(parser.times[1], UTCDateTime('2016-01-01T02:04:00Z'))
- assert_equals(parser.data['H'][1], 314.1)
- assert_equals(parser.data['D'][1], 51.61)
- assert_equals(parser.data['Z'][1], 718.1)
- assert_equals(parser.data['F'][1], 920.2)
+ assert_equal(parser.times[0], UTCDateTime('2016-01-01T02:03:00Z'))
+ assert_equal(parser.data['H'][0], 123.4)
+ assert_equal(parser.data['D'][0], 56.78)
+ assert_equal(parser.data['Z'][0], 910.1)
+ assert_equal(parser.data['F'][0], 112.1)
+ assert_equal(parser.times[1], UTCDateTime('2016-01-01T02:04:00Z'))
+ assert_equal(parser.data['H'][1], 314.1)
+ assert_equal(parser.data['D'][1], 51.61)
+ assert_equal(parser.data['Z'][1], 718.1)
+ assert_equal(parser.data['F'][1], 920.2)
diff --git a/test/imfv283_test/IMFV283Parser_test.py b/test/imfv283_test/IMFV283Parser_test.py
index add50c90c..31d833ab9 100644
--- a/test/imfv283_test/IMFV283Parser_test.py
+++ b/test/imfv283_test/IMFV283Parser_test.py
@@ -1,7 +1,7 @@
"""Tests for the IMFV283 Parser class."""
from __future__ import unicode_literals
-from nose.tools import assert_equals
+from numpy.testing import assert_equal
from obspy import UTCDateTime
from geomagio.imfv283 import IMFV283Parser, imfv283_codes
@@ -25,7 +25,7 @@ def test_parse_msg_header():
Verify the header name and value are split at the correct column.
"""
header = IMFV283Parser()._parse_msg_header(IMFV283_EXAMPLE_VIC)
- assert_equals(header['obs'], 'VIC')
+ assert_equal(header['obs'], 'VIC')
def test_parse_goes_header():
@@ -35,7 +35,7 @@ def test_parse_goes_header():
imfv283_codes.OBSERVATORIES['VIC'],
191)
goes_header = IMFV283Parser()._parse_goes_header(goes_data)
- assert_equals(goes_header['day'], 23)
+ assert_equal(goes_header['day'], 23)
def test_estimate_data_time__correct_doy():
@@ -50,9 +50,9 @@ def test_estimate_data_time__correct_doy():
minute = 72
(data_time, transmit_time, corrected) = \
parser._estimate_data_time(transmission, day, minute)
- assert_equals(data_time, UTCDateTime('2017-10-01T01:12:00Z'))
- assert_equals(transmit_time, UTCDateTime('2017-10-01T01:31:21Z'))
- assert_equals(corrected, False)
+ assert_equal(data_time, UTCDateTime('2017-10-01T01:12:00Z'))
+ assert_equal(transmit_time, UTCDateTime('2017-10-01T01:31:21Z'))
+ assert_equal(corrected, False)
def test_estimate_data_time__incorrect_doy():
@@ -67,6 +67,6 @@ def test_estimate_data_time__incorrect_doy():
minute = 78
(data_time, transmit_time, corrected) = \
parser._estimate_data_time(transmission, day, minute)
- assert_equals(data_time, UTCDateTime('2017-10-01T01:18:00Z'))
- assert_equals(transmit_time, UTCDateTime('2017-10-01T01:32:41Z'))
- assert_equals(corrected, True)
+ assert_equal(data_time, UTCDateTime('2017-10-01T01:18:00Z'))
+ assert_equal(transmit_time, UTCDateTime('2017-10-01T01:32:41Z'))
+ assert_equal(corrected, True)
diff --git a/test/pcdcp_test/PCDCPFactory_test.py b/test/pcdcp_test/PCDCPFactory_test.py
index 9b4b6ce14..9fe4f0d4d 100644
--- a/test/pcdcp_test/PCDCPFactory_test.py
+++ b/test/pcdcp_test/PCDCPFactory_test.py
@@ -3,7 +3,7 @@
from geomagio.pcdcp import PCDCPFactory
from obspy.core.utcdatetime import UTCDateTime
from obspy.core.stream import Stream
-from nose.tools import assert_equals
+from numpy.testing import assert_equal
pcdcpString = \
"""BOU 2015 001 01-Jan-15 HEZF 0.01nT File Version 2.00
@@ -31,17 +31,17 @@ def test_parse_string():
"""
stream = PCDCPFactory().parse_string(pcdcpString)
- assert_equals(type(stream), Stream)
- assert_equals(stream[0].stats.network, 'NT')
- assert_equals(stream[0].stats.station, 'BOU')
- assert_equals(stream[0].stats.starttime,
+ assert_equal(type(stream), Stream)
+ assert_equal(stream[0].stats.network, 'NT')
+ assert_equal(stream[0].stats.station, 'BOU')
+ assert_equal(stream[0].stats.starttime,
UTCDateTime('2015-01-01T00:00:00.000000Z'))
h = stream.select(channel='H')[0]
- assert_equals(h.data[1], 20861.90)
- assert_equals(stream[0].stats.endtime,
+ assert_equal(h.data[1], 20861.90)
+ assert_equal(stream[0].stats.endtime,
UTCDateTime('2015-01-01T00:04:00.000000Z'))
z = stream.select(channel='Z')[0]
- assert_equals(z.data[-1], 47457.43)
+ assert_equal(z.data[-1], 47457.43)
def test_parse_string_seconds():
@@ -52,14 +52,14 @@ def test_parse_string_seconds():
"""
stream = PCDCPFactory().parse_string(pcdcpString_seconds)
- assert_equals(type(stream), Stream)
- assert_equals(stream[0].stats.network, 'NT')
- assert_equals(stream[0].stats.station, 'BOU')
- assert_equals(stream[0].stats.starttime,
+ assert_equal(type(stream), Stream)
+ assert_equal(stream[0].stats.network, 'NT')
+ assert_equal(stream[0].stats.station, 'BOU')
+ assert_equal(stream[0].stats.starttime,
UTCDateTime('2015-01-01T00:00:00.000000Z'))
h = stream.select(channel='H')[0]
- assert_equals(h.data[0], 20861.520)
- assert_equals(stream[0].stats.endtime,
+ assert_equal(h.data[0], 20861.520)
+ assert_equal(stream[0].stats.endtime,
UTCDateTime('2015-01-01T00:00:04.000000Z'))
z = stream.select(channel='Z')[0]
- assert_equals(z.data[-1], 47457.384)
+ assert_equal(z.data[-1], 47457.384)
diff --git a/test/pcdcp_test/PCDCPParser_test.py b/test/pcdcp_test/PCDCPParser_test.py
index 7ff78762d..6df41c58a 100644
--- a/test/pcdcp_test/PCDCPParser_test.py
+++ b/test/pcdcp_test/PCDCPParser_test.py
@@ -1,6 +1,6 @@
"""Tests for the PCDCP Parser class."""
-from nose.tools import assert_equals
+from numpy.testing import assert_equal
from geomagio.pcdcp import PCDCPParser
@@ -45,11 +45,11 @@ def test_parse_header():
parser._parse_header('BOU 2015 001 01-Jan-15 HEZF 0.01nT' +
' File Version 2.00')
- assert_equals(parser.header['date'], '01-Jan-15')
- assert_equals(parser.header['station'], 'BOU')
- assert_equals(parser.header['year'], '2015')
- assert_equals(parser.header['yearday'], '001')
- assert_equals(parser.header['resolution'], '0.01nT')
+ assert_equal(parser.header['date'], '01-Jan-15')
+ assert_equal(parser.header['station'], 'BOU')
+ assert_equal(parser.header['year'], '2015')
+ assert_equal(parser.header['yearday'], '001')
+ assert_equal(parser.header['resolution'], '0.01nT')
def test_parse_header_sec():
@@ -62,8 +62,8 @@ def test_parse_header_sec():
parser._parse_header('BOU 2015 001 01-Jan-15 HEZF 0.001nT' +
' File Version 2.00')
- assert_equals(parser.header['date'], '01-Jan-15')
- assert_equals(parser.header['station'], 'BOU')
- assert_equals(parser.header['year'], '2015')
- assert_equals(parser.header['yearday'], '001')
- assert_equals(parser.header['resolution'], '0.001nT')
+ assert_equal(parser.header['date'], '01-Jan-15')
+ assert_equal(parser.header['station'], 'BOU')
+ assert_equal(parser.header['year'], '2015')
+ assert_equal(parser.header['yearday'], '001')
+ assert_equal(parser.header['resolution'], '0.001nT')
--
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