From fe19cf31bda1a2c8eb289969a1ab9e422fa4fb57 Mon Sep 17 00:00:00 2001
From: Jeremy Fee <jmfee@usgs.gov>
Date: Mon, 23 Aug 2021 17:02:48 -0600
Subject: [PATCH] Update docker build to use pip to install
---
Dockerfile | 7 ++--
poetry.lock | 100 +++++++++++++++++++++++++++++--------------------
pyproject.toml | 5 +++
3 files changed, 68 insertions(+), 44 deletions(-)
diff --git a/Dockerfile b/Dockerfile
index ec156e04..85c65fb3 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -19,15 +19,14 @@ USER root
COPY pyproject.toml poetry.lock /geomag-algorithms/
RUN cd /geomag-algorithms \
# install into system python
- && poetry config virtualenvs.create false \
+ && poetry export -o requirements.txt --without-hashes \
# only install dependencies, not project
- && poetry install --no-root
+ && pip install -r requirements.txt
# install rest of library separate from dependencies
COPY . /geomag-algorithms
RUN cd /geomag-algorithms \
- # now install project to install scripts
- && poetry install \
+ && pip install . \
# add data directory owned by usgs-user
&& mkdir -p /data \
&& chown -R usgs-user:usgs-user /data
diff --git a/poetry.lock b/poetry.lock
index 6500b05d..ae832726 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -436,7 +436,7 @@ source = ["Cython (>=0.29.7)"]
[[package]]
name = "mako"
-version = "1.1.4"
+version = "1.1.5"
description = "A super-fast templating language that borrows the best ideas from the existing templating languages."
category = "main"
optional = false
@@ -611,6 +611,14 @@ category = "main"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+[[package]]
+name = "pycurl"
+version = "7.44.1"
+description = "PycURL -- A Python Interface To The cURL library"
+category = "main"
+optional = true
+python-versions = ">=3.5"
+
[[package]]
name = "pydantic"
version = "1.8.2"
@@ -723,7 +731,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
[[package]]
name = "regex"
-version = "2021.8.3"
+version = "2021.8.21"
description = "Alternative regular expression module, to replace re."
category = "dev"
optional = false
@@ -999,10 +1007,13 @@ python-versions = ">=3.6"
docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"]
testing = ["pytest (>=4.6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "jaraco.itertools", "func-timeout", "pytest-black (>=0.3.7)", "pytest-mypy"]
+[extras]
+pycurl = ["pycurl"]
+
[metadata]
lock-version = "1.1"
python-versions = "^3.7,<3.10"
-content-hash = "cb0b5ea4ad27b8dafe86ad166bda6bf4f1e1c55e18e04273577315dbe38038a3"
+content-hash = "d771082dcb0c8a47fba54802ff0b888b434c399c0edfbdb12faaa7cb3231f68d"
[metadata.files]
aiomysql = [
@@ -1172,10 +1183,8 @@ cryptography = [
{file = "cryptography-3.4.7-cp36-abi3-win_amd64.whl", hash = "sha256:de4e5f7f68220d92b7637fc99847475b59154b7a1b3868fb7385337af54ac9ca"},
{file = "cryptography-3.4.7-pp36-pypy36_pp73-manylinux2010_x86_64.whl", hash = "sha256:26965837447f9c82f1855e0bc8bc4fb910240b6e0d16a664bb722df3b5b06873"},
{file = "cryptography-3.4.7-pp36-pypy36_pp73-manylinux2014_x86_64.whl", hash = "sha256:eb8cc2afe8b05acbd84a43905832ec78e7b3873fb124ca190f574dca7389a87d"},
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{file = "cryptography-3.4.7-pp37-pypy37_pp73-manylinux2010_x86_64.whl", hash = "sha256:7ec5d3b029f5fa2b179325908b9cd93db28ab7b85bb6c1db56b10e0b54235177"},
{file = "cryptography-3.4.7-pp37-pypy37_pp73-manylinux2014_x86_64.whl", hash = "sha256:ee77aa129f481be46f8d92a1a7db57269a2f23052d5f2433b4621bb457081cc9"},
- {file = "cryptography-3.4.7-pp37-pypy37_pp73-win_amd64.whl", hash = "sha256:bf40af59ca2465b24e54f671b2de2c59257ddc4f7e5706dbd6930e26823668d3"},
{file = "cryptography-3.4.7.tar.gz", hash = "sha256:3d10de8116d25649631977cb37da6cbdd2d6fa0e0281d014a5b7d337255ca713"},
]
cycler = [
@@ -1339,8 +1348,8 @@ lxml = [
{file = "lxml-4.6.3.tar.gz", hash = "sha256:39b78571b3b30645ac77b95f7c69d1bffc4cf8c3b157c435a34da72e78c82468"},
]
mako = [
- {file = "Mako-1.1.4-py2.py3-none-any.whl", hash = "sha256:aea166356da44b9b830c8023cd9b557fa856bd8b4035d6de771ca027dfc5cc6e"},
- {file = "Mako-1.1.4.tar.gz", hash = "sha256:17831f0b7087c313c0ffae2bcbbd3c1d5ba9eeac9c38f2eb7b50e8c99fe9d5ab"},
+ {file = "Mako-1.1.5-py2.py3-none-any.whl", hash = "sha256:6804ee66a7f6a6416910463b00d76a7b25194cd27f1918500c5bd7be2a088a23"},
+ {file = "Mako-1.1.5.tar.gz", hash = "sha256:169fa52af22a91900d852e937400e79f535496191c63712e3b9fda5a9bed6fc3"},
]
markupsafe = [
{file = "MarkupSafe-2.0.1-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:d8446c54dc28c01e5a2dbac5a25f071f6653e6e40f3a8818e8b45d790fe6ef53"},
@@ -1564,6 +1573,9 @@ pycparser = [
{file = "pycparser-2.20-py2.py3-none-any.whl", hash = "sha256:7582ad22678f0fcd81102833f60ef8d0e57288b6b5fb00323d101be910e35705"},
{file = "pycparser-2.20.tar.gz", hash = "sha256:2d475327684562c3a96cc71adf7dc8c4f0565175cf86b6d7a404ff4c771f15f0"},
]
+pycurl = [
+ {file = "pycurl-7.44.1.tar.gz", hash = "sha256:5bcef4d988b74b99653602101e17d8401338d596b9234d263c728a0c3df003e8"},
+]
pydantic = [
{file = "pydantic-1.8.2-cp36-cp36m-macosx_10_9_x86_64.whl", hash = "sha256:05ddfd37c1720c392f4e0d43c484217b7521558302e7069ce8d318438d297739"},
{file = "pydantic-1.8.2-cp36-cp36m-manylinux1_i686.whl", hash = "sha256:a7c6002203fe2c5a1b5cbb141bb85060cbff88c2d78eccbc72d97eb7022c43e4"},
@@ -1651,39 +1663,47 @@ pyyaml = [
{file = "PyYAML-5.4.1.tar.gz", hash = "sha256:607774cbba28732bfa802b54baa7484215f530991055bb562efbed5b2f20a45e"},
]
regex = [
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]
requests = [
{file = "requests-2.26.0-py2.py3-none-any.whl", hash = "sha256:6c1246513ecd5ecd4528a0906f910e8f0f9c6b8ec72030dc9fd154dc1a6efd24"},
diff --git a/pyproject.toml b/pyproject.toml
index 3ee7c6e4..acf50c69 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -26,6 +26,7 @@ python = "^3.7,<3.10"
numpy = "^1.21.1"
obspy = "^1.2.2"
openpyxl = "^3.0.7"
+pycurl = {version = "^7.44.1", optional = true}
pydantic = "^1.8.2"
requests = "^2.26.0"
scipy = "^1.7.1"
@@ -58,6 +59,10 @@ types-python-dateutil = "^0.1.6"
types-requests = "^2.25.6"
+[tool.poetry.extras]
+pycurl = ["pycurl"]
+
+
[tool.poetry.scripts]
generate-matrix = "geomagio.processing.affine_matrix:main"
geomag-metadata = "geomagio.metadata.main:main"
--
GitLab