From fd2784ed02d1c9a77498b704654ce116d0c644c3 Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Thu, 18 Jun 2020 17:10:20 -0600
Subject: [PATCH 01/46] new stuff
---
.gitlab-ci.yml | 213 +++++++++++++++++++++++++++++++++++++++++++++++++
1 file changed, 213 insertions(+)
create mode 100644 .gitlab-ci.yml
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
new file mode 100644
index 00000000..dd4df250
--- /dev/null
+++ b/.gitlab-ci.yml
@@ -0,0 +1,213 @@
+image: usgs/centos:8
+
+stages:
+ - test
+ - integration
+ - deploy
+
+variables:
+ CI_REGISTRY: ${CODE_REGISTRY}
+ CI_REGISTRY_IMAGE: ${CODE_REGISTRY_IMAGE}
+
+## --------------------------------------------------
+# Templates
+## --------------------------------------------------
+
+.adjust_image_names:
+ before_script:
+ - IMAGE_NAME=usgs/${APP_NAME}:${CI_COMMIT_REF_SLUG}
+ - IMAGE_NAME=${IMAGE_NAME/:master/:latest}
+ - INTERNAL_IMAGE_NAME=${CI_REGISTRY_IMAGE}/${IMAGE_NAME}
+ - STACK_NAME=${APP_NAME}
+
+.build_docker_image:
+ cache: {}
+ extends:
+ - .adjust_image_names
+ image: ${CODE_REGISTRY}/ghsc/hazdev/cloud-formation/hazdev-build-runner:latest
+ only:
+ - master@ghsc/geomag/geomag-plots
+ - production@ghsc/geomag/geomag-plots
+ - tags@ghsc/geomag/geomag-plots
+ script:
+ - docker build
+ --pull
+ --build-arg APP_NAME=${APP_NAME}
+ --build-arg FROM_IMAGE=${FROM_IMAGE}
+ --build-arg GIT_BRANCH_NAME=${CI_COMMIT_REF_NAME}
+ --build-arg GIT_COMMIT_SHA=${CI_COMMIT_SHA}
+ --tag local/${IMAGE_NAME} .
+
+ - docker tag local/${IMAGE_NAME} ${IMAGE_NAME}
+ - docker push ${IMAGE_NAME}
+ - docker image rm ${IMAGE_NAME}
+
+ - docker tag local/${IMAGE_NAME} ${INTERNAL_IMAGE_NAME}
+ - docker push ${INTERNAL_IMAGE_NAME}
+ - docker image rm ${INTERNAL_IMAGE_NAME}
+ stage: integration
+ tags:
+ - build
+ variables:
+ FROM_IMAGE: ${CODE_REGISTRY}/devops/images/usgs/centos:latest
+
+.check_code:
+ cache: {}
+ image: usgs/centos:latest
+ script:
+ - wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh
+ - bash miniconda.sh -b -p $HOME/miniconda
+ - export PATH="$HOME/miniconda/bin:$PATH"
+ - conda config --set always_yes yes --set changeps1 no
+ - conda update --yes conda
+ - conda info -a
+ # Install Project Dependencies
+ - conda config --add channels conda-forge
+ - conda create -q -n test-environment python=${PYTHON_VERSION} obspy pycurl
+ - source activate test-environment
+ - pip install pipenv
+ - pipenv --site-packages install --dev
+ # Run Code Checks
+ - black --check .
+ - pytest
+ stage: test
+ tags:
+ - development
+ variables:
+ PYTHON_VERSION: 3.8
+
+.deploy:
+ cache: {}
+ extends:
+ - .adjust_image_names
+ image: ${CODE_REGISTRY}/ghsc/hazdev/cloud-formation/hazdev-build-runner:latest
+ script:
+ - git clone ${GENERIC_SWARM_DEPLOY_REPO} generic-deploy
+ - export REGISTRY=${CI_REGISTRY_IMAGE}
+ - cp -v
+ generic-deploy/default.config.sh
+ generic-deploy/default.funcs.sh
+ generic-deploy/deploy.sh
+ scripts/.
+ - ./scripts/deploy.sh
+ stage: deploy
+ tags:
+ - deploy
+ - swarm
+
+.staging:
+ only:
+ - master@ghsc/geomag/geomag-plots
+ - tags@ghsc/geomag/geomag-plots
+
+.staging01:
+ tags:
+ - staging01
+
+.staging02:
+ tags:
+ - staging02
+
+.mage:
+ variables:
+ USGS_ONLY: 'false'
+
+.mage01:
+ tags:
+ - mage01
+
+.production:
+ except:
+ - ^.*beta.*$
+ - ^.*-rc.*$
+ only:
+ - tags@ghsc/geomag/geomag-plots
+ - production@ghsc/geomag/geomag-plots
+ when: manual
+
+.production01:
+ tags:
+ - production01
+
+.production02:
+ tags:
+ - production02
+
+## --------------------------------------------------
+# Test Stage
+## --------------------------------------------------
+
+Check Python 3.6:
+ extends:
+ - .check_code
+ variables:
+ PYTHON_VERSION: 3.6
+
+Check Python 3.7:
+ extends:
+ - .check_code
+ variables:
+ PYTHON_VERSION: 3.7
+
+Check Python 3.8:
+ extends:
+ - .check_code
+ variables:
+ PYTHON_VERSION: 3.8
+
+## --------------------------------------------------
+# Integration Stage
+## --------------------------------------------------
+
+Build Algorithms Image:
+ extends:
+ - .build_docker_image
+ variables:
+ APP_NAME: geomag-algorithms
+# TODO: Penetration testing (e.g. OWASP ZAP etc...)
+
+## --------------------------------------------------
+# Deploy Stage
+## --------------------------------------------------
+
+# Deploy Production01:
+
+# extends:
+# - .deploy
+# - .production
+# - .production01
+# variables:
+# APP_NAME: geomag-plots
+
+# Deploy Production02:
+# extends:
+# - .deploy
+# - .production
+# - .production02
+# variables:
+# APP_NAME: geomag-plots
+
+# Deploy Staging01:
+# extends:
+# - .deploy
+# - .staging
+# - .staging01
+# variables:
+# APP_NAME: geomag-plots
+
+# Deploy Staging02:
+# extends:
+# - .deploy
+# - .staging
+# - .staging02
+# variables:
+# APP_NAME: geomag-plots
+
+# Deploy Mage01:
+# extends:
+# - .deploy
+# - .staging
+# - .mage
+# - .mage01
+# variables:
+# APP_NAME: geomag-plots
--
GitLab
From 9cd86f337e6f446cc94c83407352e17d24770500 Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Thu, 18 Jun 2020 17:13:50 -0600
Subject: [PATCH 02/46] add strings
---
.gitlab-ci.yml | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index dd4df250..56327dd7 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -141,19 +141,19 @@ Check Python 3.6:
extends:
- .check_code
variables:
- PYTHON_VERSION: 3.6
+ PYTHON_VERSION: '3.6'
Check Python 3.7:
extends:
- .check_code
variables:
- PYTHON_VERSION: 3.7
+ PYTHON_VERSION: '3.7'
Check Python 3.8:
extends:
- .check_code
variables:
- PYTHON_VERSION: 3.8
+ PYTHON_VERSION: '3.8'
## --------------------------------------------------
# Integration Stage
--
GitLab
From ff2c13959d568637d3c2fbf668077d7af89607e1 Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Thu, 18 Jun 2020 17:15:27 -0600
Subject: [PATCH 03/46] add wget
---
.gitlab-ci.yml | 1 +
1 file changed, 1 insertion(+)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 56327dd7..f8e1290e 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -55,6 +55,7 @@ variables:
cache: {}
image: usgs/centos:latest
script:
+ - yum install -y wget
- wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh
- bash miniconda.sh -b -p $HOME/miniconda
- export PATH="$HOME/miniconda/bin:$PATH"
--
GitLab
From 90a011640ba1f1f168a5caff5b1bc1b40ed87e40 Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Thu, 18 Jun 2020 17:19:58 -0600
Subject: [PATCH 04/46] add pre flag
---
.gitlab-ci.yml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index f8e1290e..56057a3c 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -67,7 +67,7 @@ variables:
- conda create -q -n test-environment python=${PYTHON_VERSION} obspy pycurl
- source activate test-environment
- pip install pipenv
- - pipenv --site-packages install --dev
+ - pipenv --site-packages install --dev --pre
# Run Code Checks
- black --check .
- pytest
--
GitLab
From 2ab63571c63caa9aa5375f2c6ee4a6908292996a Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Thu, 18 Jun 2020 17:23:06 -0600
Subject: [PATCH 05/46] remove environment
---
.gitlab-ci.yml | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 56057a3c..c41904c4 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -64,8 +64,7 @@ variables:
- conda info -a
# Install Project Dependencies
- conda config --add channels conda-forge
- - conda create -q -n test-environment python=${PYTHON_VERSION} obspy pycurl
- - source activate test-environment
+ - conda install python=${PYTHON_VERSION} obspy pycurl
- pip install pipenv
- pipenv --site-packages install --dev --pre
# Run Code Checks
--
GitLab
From 5994b881eb6c2827308f15c4c74555cbd3c0fb85 Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Thu, 18 Jun 2020 17:27:16 -0600
Subject: [PATCH 06/46] add pipenv run
---
.gitlab-ci.yml | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index c41904c4..14b6c14d 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -68,8 +68,8 @@ variables:
- pip install pipenv
- pipenv --site-packages install --dev --pre
# Run Code Checks
- - black --check .
- - pytest
+ - pipenv run black --check .
+ - pipenv run pytest
stage: test
tags:
- development
--
GitLab
From da9675c6f28bfb0ff353884b0c49668a12c98097 Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Thu, 18 Jun 2020 17:28:53 -0600
Subject: [PATCH 07/46] add environment variables
---
.gitlab-ci.yml | 2 ++
1 file changed, 2 insertions(+)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 14b6c14d..65962423 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -66,6 +66,8 @@ variables:
- conda config --add channels conda-forge
- conda install python=${PYTHON_VERSION} obspy pycurl
- pip install pipenv
+ - export LC_ALL=C.UTF-8
+ - export LANG=C.UTF-8
- pipenv --site-packages install --dev --pre
# Run Code Checks
- pipenv run black --check .
--
GitLab
From 73952b4fb1f1d2905aa1019ec9e8fd21cd7738b2 Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Mon, 22 Jun 2020 11:04:29 -0600
Subject: [PATCH 08/46] update pydantic version
---
.gitlab-ci.yml | 2 +-
Pipfile | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 65962423..88aacb8b 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -55,7 +55,7 @@ variables:
cache: {}
image: usgs/centos:latest
script:
- - yum install -y wget
+ - yum install -y wget which
- wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh
- bash miniconda.sh -b -p $HOME/miniconda
- export PATH="$HOME/miniconda/bin:$PATH"
diff --git a/Pipfile b/Pipfile
index b0aa5ae3..006b1080 100644
--- a/Pipfile
+++ b/Pipfile
@@ -21,7 +21,7 @@ databases = {extras = ["postgresql", "sqlite"],version = "*"}
fastapi = "*"
httpx = "==0.11.1"
openpyxl = "*"
-pydantic = "==1.4"
+pydantic = "==1.51"
sqlalchemy = "*"
sqlalchemy-utc = "*"
typing = "*"
--
GitLab
From 814b30f4453e68d39393f340a4b9186393833125 Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Mon, 22 Jun 2020 11:12:55 -0600
Subject: [PATCH 09/46] fix pydantic version
---
Pipfile | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/Pipfile b/Pipfile
index 006b1080..ad00171f 100644
--- a/Pipfile
+++ b/Pipfile
@@ -21,7 +21,7 @@ databases = {extras = ["postgresql", "sqlite"],version = "*"}
fastapi = "*"
httpx = "==0.11.1"
openpyxl = "*"
-pydantic = "==1.51"
+pydantic = "==1.5.1"
sqlalchemy = "*"
sqlalchemy-utc = "*"
typing = "*"
--
GitLab
From 090cd7017e29a503cc8da15880aa6a603c3e5ec0 Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Mon, 22 Jun 2020 11:53:54 -0600
Subject: [PATCH 10/46] add devops registry variable
---
.gitlab-ci.yml | 4 +---
1 file changed, 1 insertion(+), 3 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 88aacb8b..c0e38a23 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -1,4 +1,4 @@
-image: usgs/centos:8
+image: ${DEVOPS_REGISTRY}usgs/centos:latest
stages:
- test
@@ -166,8 +166,6 @@ Build Algorithms Image:
- .build_docker_image
variables:
APP_NAME: geomag-algorithms
-# TODO: Penetration testing (e.g. OWASP ZAP etc...)
-
## --------------------------------------------------
# Deploy Stage
## --------------------------------------------------
--
GitLab
From 78c638fd83c698059fdc6abc9b0cab16c51e6a89 Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Mon, 22 Jun 2020 12:15:30 -0600
Subject: [PATCH 11/46] try pydantic 1.5
---
Pipfile | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/Pipfile b/Pipfile
index ad00171f..f2d148d4 100644
--- a/Pipfile
+++ b/Pipfile
@@ -21,7 +21,7 @@ databases = {extras = ["postgresql", "sqlite"],version = "*"}
fastapi = "*"
httpx = "==0.11.1"
openpyxl = "*"
-pydantic = "==1.5.1"
+pydantic = "==1.5"
sqlalchemy = "*"
sqlalchemy-utc = "*"
typing = "*"
--
GitLab
From ec5292a77bbb79644f97af4e327d4b8ec99eccb3 Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Mon, 22 Jun 2020 14:44:35 -0600
Subject: [PATCH 12/46] change back pydantic, add code cov
---
.gitlab-ci.yml | 2 +-
Pipfile | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index c0e38a23..bffea6bf 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -71,7 +71,7 @@ variables:
- pipenv --site-packages install --dev --pre
# Run Code Checks
- pipenv run black --check .
- - pipenv run pytest
+ - pipenv run pytest --cov-report term --cov=test/
stage: test
tags:
- development
diff --git a/Pipfile b/Pipfile
index f2d148d4..ad00171f 100644
--- a/Pipfile
+++ b/Pipfile
@@ -21,7 +21,7 @@ databases = {extras = ["postgresql", "sqlite"],version = "*"}
fastapi = "*"
httpx = "==0.11.1"
openpyxl = "*"
-pydantic = "==1.5"
+pydantic = "==1.5.1"
sqlalchemy = "*"
sqlalchemy-utc = "*"
typing = "*"
--
GitLab
From ca1dd7b2f1741ce54e0568525b1d65420c013999 Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Mon, 22 Jun 2020 15:14:02 -0600
Subject: [PATCH 13/46] add coverage
---
.gitlab-ci.yml | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index bffea6bf..e7843761 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -71,7 +71,8 @@ variables:
- pipenv --site-packages install --dev --pre
# Run Code Checks
- pipenv run black --check .
- - pipenv run pytest --cov-report term --cov=test/
+ - pipenv run pytest --cov-report term --cov=test/ --junitxml=geomag-algorithms/test
+
stage: test
tags:
- development
--
GitLab
From cfd0f74d6257e4f1d0850018f9b454d29ebb1aec Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Mon, 22 Jun 2020 16:31:21 -0600
Subject: [PATCH 14/46] set up reports (maybe)
---
.gitlab-ci.yml | 10 +++++++++-
1 file changed, 9 insertions(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index e7843761..6c2e3e24 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -71,7 +71,6 @@ variables:
- pipenv --site-packages install --dev --pre
# Run Code Checks
- pipenv run black --check .
- - pipenv run pytest --cov-report term --cov=test/ --junitxml=geomag-algorithms/test
stage: test
tags:
@@ -79,6 +78,15 @@ variables:
variables:
PYTHON_VERSION: 3.8
+.pytest:
+ extends:
+ - .check_code
+ script:
+ - pipenv run pytest --cov-report xml:cov.xml --cov=test/ --junitxml=geomag-algorithms/test
+ artifacts:
+ reports:
+ pytest: cov.xml
+
.deploy:
cache: {}
extends:
--
GitLab
From 04dcb01ecd22c4472777ee9ace3c7fd2f3549e1e Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Mon, 22 Jun 2020 16:37:30 -0600
Subject: [PATCH 15/46] set up reports (maybe)
---
.gitlab-ci.yml | 6 ++++++
1 file changed, 6 insertions(+)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 6c2e3e24..90422588 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -166,6 +166,12 @@ Check Python 3.8:
variables:
PYTHON_VERSION: '3.8'
+PyTest:
+ extends:
+ - .pytest
+ variables:
+ PYTHON_VERSION: '3.8'
+
## --------------------------------------------------
# Integration Stage
## --------------------------------------------------
--
GitLab
From 52c6ed48826cc707764bbde8b4cb74fde7e61ffc Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Mon, 22 Jun 2020 16:38:55 -0600
Subject: [PATCH 16/46] set up reports (maybe)
---
.gitlab-ci.yml | 6 ++++++
1 file changed, 6 insertions(+)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 90422588..d91ac636 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -87,6 +87,12 @@ variables:
reports:
pytest: cov.xml
+ stage: test
+ tags:
+ - development
+ variables:
+ PYTHON_VERSION: 3.8
+
.deploy:
cache: {}
extends:
--
GitLab
From 767aea27cc26b3ba396473b9d72b43718e816dca Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Mon, 22 Jun 2020 16:45:23 -0600
Subject: [PATCH 17/46] change reports key
---
.gitlab-ci.yml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index d91ac636..4d02a1eb 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -85,7 +85,7 @@ variables:
- pipenv run pytest --cov-report xml:cov.xml --cov=test/ --junitxml=geomag-algorithms/test
artifacts:
reports:
- pytest: cov.xml
+ junit: cov.xml
stage: test
tags:
--
GitLab
From c867daa19b086692b18b85a8319bfae4fb7dad59 Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Mon, 22 Jun 2020 16:51:36 -0600
Subject: [PATCH 18/46] add pytest to check code
---
.gitlab-ci.yml | 1 +
1 file changed, 1 insertion(+)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 4d02a1eb..9256cc36 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -169,6 +169,7 @@ Check Python 3.7:
Check Python 3.8:
extends:
- .check_code
+ - .pytest
variables:
PYTHON_VERSION: '3.8'
--
GitLab
From c488ffb3ec97184fef2a946fd339f6d0b0df2df8 Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Mon, 22 Jun 2020 16:55:47 -0600
Subject: [PATCH 19/46] add pytest to check code
---
.gitlab-ci.yml | 19 -------------------
1 file changed, 19 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 9256cc36..6f5de052 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -71,22 +71,10 @@ variables:
- pipenv --site-packages install --dev --pre
# Run Code Checks
- pipenv run black --check .
-
- stage: test
- tags:
- - development
- variables:
- PYTHON_VERSION: 3.8
-
-.pytest:
- extends:
- - .check_code
- script:
- pipenv run pytest --cov-report xml:cov.xml --cov=test/ --junitxml=geomag-algorithms/test
artifacts:
reports:
junit: cov.xml
-
stage: test
tags:
- development
@@ -169,13 +157,6 @@ Check Python 3.7:
Check Python 3.8:
extends:
- .check_code
- - .pytest
- variables:
- PYTHON_VERSION: '3.8'
-
-PyTest:
- extends:
- - .pytest
variables:
PYTHON_VERSION: '3.8'
--
GitLab
From fcb0fa755c816af625e7460e76ae2cda399dddd2 Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Mon, 22 Jun 2020 17:04:58 -0600
Subject: [PATCH 20/46] change pytest settings
---
.gitlab-ci.yml | 4 +-
cov.xml | 1755 ++++++++++++++++++++++++++++++++++++++++++++++++
2 files changed, 1758 insertions(+), 1 deletion(-)
create mode 100644 cov.xml
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 6f5de052..bdda762f 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -71,8 +71,10 @@ variables:
- pipenv --site-packages install --dev --pre
# Run Code Checks
- pipenv run black --check .
- - pipenv run pytest --cov-report xml:cov.xml --cov=test/ --junitxml=geomag-algorithms/test
+ - pipenv run pytest --cov-report xml:cov.xml --cov=test/
artifacts:
+ paths:
+ - cov.xml
reports:
junit: cov.xml
stage: test
diff --git a/cov.xml b/cov.xml
new file mode 100644
index 00000000..fcffa53b
--- /dev/null
+++ b/cov.xml
@@ -0,0 +1,1755 @@
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+ <!-- Based on https://raw.githubusercontent.com/cobertura/web/master/htdocs/xml/coverage-04.dtd -->
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+ <source>/Users/trivers/Desktop/WebApps/Flask/geomag-algorithms/geomag-algorithms/test</source>
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+ <line hits="1" number="89"/>
+ </lines>
+ </class>
+ <class branch-rate="0" complexity="0" filename="algorithm_test/__init__.py" line-rate="1" name="__init__.py">
+ <methods/>
+ <lines/>
+ </class>
+ </classes>
+ </package>
+ <package branch-rate="0" complexity="0" line-rate="0.9444" name="edge_test">
+ <classes>
+ <class branch-rate="0" complexity="0" filename="edge_test/EdgeFactory_test.py" line-rate="0.8919" name="EdgeFactory_test.py">
+ <methods/>
+ <lines>
+ <line hits="1" number="3"/>
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+ <line hits="0" number="76"/>
+ <line hits="0" number="84"/>
+ <line hits="0" number="89"/>
+ </lines>
+ </class>
+ <class branch-rate="0" complexity="0" filename="edge_test/MiniSeedFactory_test.py" line-rate="0.9481" name="MiniSeedFactory_test.py">
+ <methods/>
+ <lines>
+ <line hits="1" number="3"/>
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+ <line hits="1" number="5"/>
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+ <line hits="1" number="82"/>
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+ <line hits="1" number="87"/>
+ <line hits="1" number="89"/>
+ <line hits="1" number="90"/>
+ <line hits="1" number="91"/>
+ <line hits="1" number="93"/>
+ <line hits="1" number="94"/>
+ <line hits="1" number="95"/>
+ <line hits="1" number="96"/>
+ <line hits="1" number="99"/>
+ <line hits="1" number="104"/>
+ <line hits="1" number="105"/>
+ <line hits="1" number="106"/>
+ <line hits="1" number="107"/>
+ <line hits="1" number="108"/>
+ <line hits="1" number="109"/>
+ <line hits="1" number="113"/>
+ <line hits="0" number="118"/>
+ <line hits="0" number="119"/>
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+ <line hits="1" number="163"/>
+ <line hits="1" number="164"/>
+ <line hits="1" number="165"/>
+ <line hits="1" number="166"/>
+ <line hits="1" number="167"/>
+ <line hits="1" number="168"/>
+ <line hits="1" number="169"/>
+ <line hits="1" number="170"/>
+ </lines>
+ </class>
+ <class branch-rate="0" complexity="0" filename="edge_test/RawInputClient_test.py" line-rate="1" name="RawInputClient_test.py">
+ <methods/>
+ <lines>
+ <line hits="1" number="3"/>
+ <line hits="1" number="4"/>
+ <line hits="1" number="5"/>
+ <line hits="1" number="6"/>
+ <line hits="1" number="9"/>
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+ <line hits="1" number="11"/>
+ <line hits="1" number="12"/>
+ <line hits="1" number="14"/>
+ <line hits="1" number="16"/>
+ <line hits="1" number="19"/>
+ <line hits="1" number="22"/>
+ <line hits="1" number="23"/>
+ <line hits="1" number="24"/>
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+ <line hits="1" number="26"/>
+ <line hits="1" number="27"/>
+ <line hits="1" number="29"/>
+ <line hits="1" number="44"/>
+ <line hits="1" number="53"/>
+ <line hits="1" number="54"/>
+ <line hits="1" number="56"/>
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+ <line hits="1" number="62"/>
+ <line hits="1" number="63"/>
+ <line hits="1" number="64"/>
+ <line hits="1" number="65"/>
+ <line hits="1" number="66"/>
+ <line hits="1" number="75"/>
+ <line hits="1" number="76"/>
+ </lines>
+ </class>
+ <class branch-rate="0" complexity="0" filename="edge_test/__init__.py" line-rate="1" name="__init__.py">
+ <methods/>
+ <lines/>
+ </class>
+ </classes>
+ </package>
+ <package branch-rate="0" complexity="0" line-rate="1" name="iaga2002_test">
+ <classes>
+ <class branch-rate="0" complexity="0" filename="iaga2002_test/IAGA2002Factory_test.py" line-rate="1" name="IAGA2002Factory_test.py">
+ <methods/>
+ <lines>
+ <line hits="1" number="3"/>
+ <line hits="1" number="4"/>
+ <line hits="1" number="7"/>
+ <line hits="1" number="13"/>
+ <line hits="1" number="14"/>
+ <line hits="1" number="15"/>
+ </lines>
+ </class>
+ <class branch-rate="0" complexity="0" filename="iaga2002_test/IAGA2002Parser_test.py" line-rate="1" name="IAGA2002Parser_test.py">
+ <methods/>
+ <lines>
+ <line hits="1" number="3"/>
+ <line hits="1" number="4"/>
+ <line hits="1" number="7"/>
+ <line hits="1" number="44"/>
+ <line hits="1" number="51"/>
+ <line hits="1" number="52"/>
+ <line hits="1" number="57"/>
+ <line hits="1" number="63"/>
+ <line hits="1" number="64"/>
+ <line hits="1" number="67"/>
+ <line hits="1" number="70"/>
+ <line hits="1" number="76"/>
+ <line hits="1" number="77"/>
+ <line hits="1" number="80"/>
+ <line hits="1" number="86"/>
+ <line hits="1" number="93"/>
+ <line hits="1" number="94"/>
+ <line hits="1" number="97"/>
+ <line hits="1" number="100"/>
+ <line hits="1" number="103"/>
+ <line hits="1" number="110"/>
+ <line hits="1" number="111"/>
+ <line hits="1" number="112"/>
+ </lines>
+ </class>
+ <class branch-rate="0" complexity="0" filename="iaga2002_test/__init__.py" line-rate="1" name="__init__.py">
+ <methods/>
+ <lines/>
+ </class>
+ </classes>
+ </package>
+ <package branch-rate="0" complexity="0" line-rate="1" name="imfjson_test">
+ <classes>
+ <class branch-rate="0" complexity="0" filename="imfjson_test/IMFJSONWriter_test.py" line-rate="1" name="IMFJSONWriter_test.py">
+ <methods/>
+ <lines>
+ <line hits="1" number="3"/>
+ <line hits="1" number="4"/>
+ <line hits="1" number="5"/>
+ <line hits="1" number="6"/>
+ <line hits="1" number="9"/>
+ <line hits="1" number="10"/>
+ <line hits="1" number="11"/>
+ <line hits="1" number="12"/>
+ <line hits="1" number="13"/>
+ <line hits="1" number="14"/>
+ <line hits="1" number="15"/>
+ <line hits="1" number="18"/>
+ <line hits="1" number="25"/>
+ <line hits="1" number="26"/>
+ <line hits="1" number="27"/>
+ <line hits="1" number="29"/>
+ <line hits="1" number="30"/>
+ <line hits="1" number="31"/>
+ <line hits="1" number="32"/>
+ <line hits="1" number="33"/>
+ <line hits="1" number="34"/>
+ <line hits="1" number="36"/>
+ <line hits="1" number="37"/>
+ <line hits="1" number="38"/>
+ <line hits="1" number="39"/>
+ <line hits="1" number="42"/>
+ <line hits="1" number="49"/>
+ <line hits="1" number="50"/>
+ <line hits="1" number="52"/>
+ <line hits="1" number="55"/>
+ <line hits="1" number="56"/>
+ <line hits="1" number="57"/>
+ <line hits="1" number="58"/>
+ <line hits="1" number="61"/>
+ <line hits="1" number="69"/>
+ <line hits="1" number="70"/>
+ <line hits="1" number="71"/>
+ <line hits="1" number="72"/>
+ <line hits="1" number="73"/>
+ <line hits="1" number="74"/>
+ <line hits="1" number="75"/>
+ <line hits="1" number="76"/>
+ <line hits="1" number="77"/>
+ <line hits="1" number="78"/>
+ <line hits="1" number="80"/>
+ <line hits="1" number="81"/>
+ <line hits="1" number="82"/>
+ <line hits="1" number="83"/>
+ <line hits="1" number="84"/>
+ <line hits="1" number="85"/>
+ <line hits="1" number="86"/>
+ <line hits="1" number="89"/>
+ <line hits="1" number="92"/>
+ <line hits="1" number="93"/>
+ <line hits="1" number="94"/>
+ <line hits="1" number="98"/>
+ <line hits="1" number="99"/>
+ </lines>
+ </class>
+ <class branch-rate="0" complexity="0" filename="imfjson_test/__init__.py" line-rate="1" name="__init__.py">
+ <methods/>
+ <lines/>
+ </class>
+ </classes>
+ </package>
+ <package branch-rate="0" complexity="0" line-rate="1" name="imfv122_test">
+ <classes>
+ <class branch-rate="0" complexity="0" filename="imfv122_test/IMFV122Parser_test.py" line-rate="1" name="IMFV122Parser_test.py">
+ <methods/>
+ <lines>
+ <line hits="1" number="3"/>
+ <line hits="1" number="4"/>
+ <line hits="1" number="5"/>
+ <line hits="1" number="8"/>
+ <line hits="1" number="11"/>
+ <line hits="1" number="12"/>
+ <line hits="1" number="15"/>
+ <line hits="1" number="16"/>
+ <line hits="1" number="17"/>
+ <line hits="1" number="18"/>
+ <line hits="1" number="19"/>
+ <line hits="1" number="20"/>
+ <line hits="1" number="21"/>
+ <line hits="1" number="22"/>
+ <line hits="1" number="25"/>
+ <line hits="1" number="28"/>
+ <line hits="1" number="29"/>
+ <line hits="1" number="32"/>
+ <line hits="1" number="33"/>
+ <line hits="1" number="34"/>
+ <line hits="1" number="35"/>
+ <line hits="1" number="36"/>
+ <line hits="1" number="37"/>
+ <line hits="1" number="38"/>
+ <line hits="1" number="39"/>
+ <line hits="1" number="42"/>
+ <line hits="1" number="45"/>
+ <line hits="1" number="46"/>
+ <line hits="1" number="49"/>
+ <line hits="1" number="50"/>
+ <line hits="1" number="52"/>
+ <line hits="1" number="53"/>
+ <line hits="1" number="54"/>
+ <line hits="1" number="55"/>
+ <line hits="1" number="56"/>
+ <line hits="1" number="57"/>
+ <line hits="1" number="58"/>
+ <line hits="1" number="59"/>
+ <line hits="1" number="60"/>
+ <line hits="1" number="61"/>
+ <line hits="1" number="62"/>
+ <line hits="1" number="65"/>
+ <line hits="1" number="68"/>
+ <line hits="1" number="69"/>
+ <line hits="1" number="72"/>
+ <line hits="1" number="73"/>
+ <line hits="1" number="74"/>
+ <line hits="1" number="75"/>
+ <line hits="1" number="76"/>
+ <line hits="1" number="77"/>
+ <line hits="1" number="78"/>
+ <line hits="1" number="79"/>
+ <line hits="1" number="80"/>
+ <line hits="1" number="81"/>
+ <line hits="1" number="82"/>
+ <line hits="1" number="83"/>
+ </lines>
+ </class>
+ <class branch-rate="0" complexity="0" filename="imfv122_test/__init__.py" line-rate="1" name="__init__.py">
+ <methods/>
+ <lines/>
+ </class>
+ </classes>
+ </package>
+ <package branch-rate="0" complexity="0" line-rate="1" name="imfv283_test">
+ <classes>
+ <class branch-rate="0" complexity="0" filename="imfv283_test/IMFV283Parser_test.py" line-rate="1" name="IMFV283Parser_test.py">
+ <methods/>
+ <lines>
+ <line hits="1" number="2"/>
+ <line hits="1" number="4"/>
+ <line hits="1" number="5"/>
+ <line hits="1" number="7"/>
+ <line hits="1" number="10"/>
+ <line hits="1" number="17"/>
+ <line hits="1" number="25"/>
+ <line hits="1" number="31"/>
+ <line hits="1" number="32"/>
+ <line hits="1" number="35"/>
+ <line hits="1" number="38"/>
+ <line hits="1" number="41"/>
+ <line hits="1" number="42"/>
+ <line hits="1" number="45"/>
+ <line hits="1" number="50"/>
+ <line hits="1" number="52"/>
+ <line hits="1" number="53"/>
+ <line hits="1" number="54"/>
+ <line hits="1" number="55"/>
+ <line hits="1" number="58"/>
+ <line hits="1" number="59"/>
+ <line hits="1" number="60"/>
+ <line hits="1" number="63"/>
+ <line hits="1" number="68"/>
+ <line hits="1" number="70"/>
+ <line hits="1" number="71"/>
+ <line hits="1" number="72"/>
+ <line hits="1" number="73"/>
+ <line hits="1" number="76"/>
+ <line hits="1" number="77"/>
+ <line hits="1" number="78"/>
+ </lines>
+ </class>
+ <class branch-rate="0" complexity="0" filename="imfv283_test/__init__.py" line-rate="1" name="__init__.py">
+ <methods/>
+ <lines/>
+ </class>
+ </classes>
+ </package>
+ <package branch-rate="0" complexity="0" line-rate="1" name="pcdcp_test">
+ <classes>
+ <class branch-rate="0" complexity="0" filename="pcdcp_test/PCDCPFactory_test.py" line-rate="1" name="PCDCPFactory_test.py">
+ <methods/>
+ <lines>
+ <line hits="1" number="3"/>
+ <line hits="1" number="4"/>
+ <line hits="1" number="5"/>
+ <line hits="1" number="6"/>
+ <line hits="1" number="8"/>
+ <line hits="1" number="15"/>
+ <line hits="1" number="24"/>
+ <line hits="1" number="30"/>
+ <line hits="1" number="32"/>
+ <line hits="1" number="33"/>
+ <line hits="1" number="34"/>
+ <line hits="1" number="35"/>
+ <line hits="1" number="36"/>
+ <line hits="1" number="37"/>
+ <line hits="1" number="38"/>
+ <line hits="1" number="39"/>
+ <line hits="1" number="40"/>
+ <line hits="1" number="43"/>
+ <line hits="1" number="49"/>
+ <line hits="1" number="51"/>
+ <line hits="1" number="52"/>
+ <line hits="1" number="53"/>
+ <line hits="1" number="54"/>
+ <line hits="1" number="55"/>
+ <line hits="1" number="56"/>
+ <line hits="1" number="57"/>
+ <line hits="1" number="58"/>
+ <line hits="1" number="59"/>
+ </lines>
+ </class>
+ <class branch-rate="0" complexity="0" filename="pcdcp_test/PCDCPParser_test.py" line-rate="1" name="PCDCPParser_test.py">
+ <methods/>
+ <lines>
+ <line hits="1" number="3"/>
+ <line hits="1" number="4"/>
+ <line hits="1" number="7"/>
+ <line hits="1" number="20"/>
+ <line hits="1" number="36"/>
+ <line hits="1" number="42"/>
+ <line hits="1" number="43"/>
+ <line hits="1" number="47"/>
+ <line hits="1" number="48"/>
+ <line hits="1" number="49"/>
+ <line hits="1" number="50"/>
+ <line hits="1" number="51"/>
+ <line hits="1" number="54"/>
+ <line hits="1" number="60"/>
+ <line hits="1" number="61"/>
+ <line hits="1" number="65"/>
+ <line hits="1" number="66"/>
+ <line hits="1" number="67"/>
+ <line hits="1" number="68"/>
+ <line hits="1" number="69"/>
+ </lines>
+ </class>
+ <class branch-rate="0" complexity="0" filename="pcdcp_test/__init__.py" line-rate="1" name="__init__.py">
+ <methods/>
+ <lines/>
+ </class>
+ </classes>
+ </package>
+ <package branch-rate="0" complexity="0" line-rate="1" name="residual_test">
+ <classes>
+ <class branch-rate="0" complexity="0" filename="residual_test/residual_test.py" line-rate="1" name="residual_test.py">
+ <methods/>
+ <lines>
+ <line hits="1" number="1"/>
+ <line hits="1" number="2"/>
+ <line hits="1" number="4"/>
+ <line hits="1" number="5"/>
+ <line hits="1" number="13"/>
+ <line hits="1" number="17"/>
+ <line hits="1" number="18"/>
+ <line hits="1" number="19"/>
+ <line hits="1" number="20"/>
+ <line hits="1" number="21"/>
+ <line hits="1" number="27"/>
+ <line hits="1" number="33"/>
+ <line hits="1" number="40"/>
+ <line hits="1" number="41"/>
+ <line hits="1" number="46"/>
+ <line hits="1" number="51"/>
+ <line hits="1" number="53"/>
+ <line hits="1" number="54"/>
+ <line hits="1" number="57"/>
+ <line hits="1" number="62"/>
+ <line hits="1" number="64"/>
+ <line hits="1" number="65"/>
+ <line hits="1" number="68"/>
+ <line hits="1" number="75"/>
+ <line hits="1" number="77"/>
+ <line hits="1" number="82"/>
+ <line hits="1" number="89"/>
+ <line hits="1" number="91"/>
+ <line hits="1" number="98"/>
+ <line hits="1" number="104"/>
+ <line hits="1" number="109"/>
+ <line hits="1" number="110"/>
+ <line hits="1" number="117"/>
+ <line hits="1" number="123"/>
+ <line hits="1" number="128"/>
+ <line hits="1" number="129"/>
+ </lines>
+ </class>
+ </classes>
+ </package>
+ </packages>
+</coverage>
--
GitLab
From 72ec699881958080c06550999018df0710eeb7fe Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Tue, 23 Jun 2020 15:14:37 -0600
Subject: [PATCH 21/46] update docker build
---
.gitlab-ci.yml | 15 +++++++--------
1 file changed, 7 insertions(+), 8 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index bdda762f..9a3bbdd6 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -26,9 +26,9 @@ variables:
- .adjust_image_names
image: ${CODE_REGISTRY}/ghsc/hazdev/cloud-formation/hazdev-build-runner:latest
only:
- - master@ghsc/geomag/geomag-plots
- - production@ghsc/geomag/geomag-plots
- - tags@ghsc/geomag/geomag-plots
+ - master@ghsc/geomag/geomag-algorithms
+ - production@ghsc/geomag/geomag-algorithms
+ - tags@ghsc/geomag/geomag-algorithms
script:
- docker build
--pull
@@ -104,8 +104,8 @@ variables:
.staging:
only:
- - master@ghsc/geomag/geomag-plots
- - tags@ghsc/geomag/geomag-plots
+ - master@ghsc/geomag/geomag-algorithms
+ - tags@ghsc/geomag/geomag-algorithms
.staging01:
tags:
@@ -128,8 +128,8 @@ variables:
- ^.*beta.*$
- ^.*-rc.*$
only:
- - tags@ghsc/geomag/geomag-plots
- - production@ghsc/geomag/geomag-plots
+ - tags@ghsc/geomag/geomag-algorithms
+ - production@ghsc/geomag/geomag-algorithms
when: manual
.production01:
@@ -165,7 +165,6 @@ Check Python 3.8:
## --------------------------------------------------
# Integration Stage
## --------------------------------------------------
-
Build Algorithms Image:
extends:
- .build_docker_image
--
GitLab
From e1fd12bff03be9d1f122969c765f6658e45a1e0c Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Tue, 23 Jun 2020 15:20:47 -0600
Subject: [PATCH 22/46] comment out 'only' section of docker build
---
.gitlab-ci.yml | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 9a3bbdd6..c161a28f 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -25,10 +25,10 @@ variables:
extends:
- .adjust_image_names
image: ${CODE_REGISTRY}/ghsc/hazdev/cloud-formation/hazdev-build-runner:latest
- only:
- - master@ghsc/geomag/geomag-algorithms
- - production@ghsc/geomag/geomag-algorithms
- - tags@ghsc/geomag/geomag-algorithms
+ # only:
+ # - master@ghsc/geomag/geomag-algorithms
+ # - production@ghsc/geomag/geomag-algorithms
+ # - tags@ghsc/geomag/geomag-algorithms
script:
- docker build
--pull
--
GitLab
From 9c1b81d6de4ef19959d570d39b47c6fd96d5383c Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Tue, 23 Jun 2020 16:10:36 -0600
Subject: [PATCH 23/46] comment out 3.6,7 to test docker build
---
.gitlab-ci.yml | 20 ++++++++++----------
1 file changed, 10 insertions(+), 10 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index c161a28f..565be8b6 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -144,17 +144,17 @@ variables:
# Test Stage
## --------------------------------------------------
-Check Python 3.6:
- extends:
- - .check_code
- variables:
- PYTHON_VERSION: '3.6'
+# Check Python 3.6:
+# extends:
+# - .check_code
+# variables:
+# PYTHON_VERSION: '3.6'
-Check Python 3.7:
- extends:
- - .check_code
- variables:
- PYTHON_VERSION: '3.7'
+# Check Python 3.7:
+# extends:
+# - .check_code
+# variables:
+# PYTHON_VERSION: '3.7'
Check Python 3.8:
extends:
--
GitLab
From 30eb6f1d2c74bb63bd873e15bb23a412a391f7d6 Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Tue, 23 Jun 2020 16:20:00 -0600
Subject: [PATCH 24/46] comment out tags for testing
---
.gitlab-ci.yml | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 565be8b6..857333de 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -46,8 +46,8 @@ variables:
- docker push ${INTERNAL_IMAGE_NAME}
- docker image rm ${INTERNAL_IMAGE_NAME}
stage: integration
- tags:
- - build
+ # tags:
+ # - build
variables:
FROM_IMAGE: ${CODE_REGISTRY}/devops/images/usgs/centos:latest
--
GitLab
From 20a1c01a09bfd12100e73f76a5a0d5ce47b963e3 Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Tue, 23 Jun 2020 16:36:02 -0600
Subject: [PATCH 25/46] add skip lock to pipenv install
---
.gitlab-ci.yml | 22 +++++++++++-----------
1 file changed, 11 insertions(+), 11 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 857333de..624b2b35 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -65,7 +65,7 @@ variables:
# Install Project Dependencies
- conda config --add channels conda-forge
- conda install python=${PYTHON_VERSION} obspy pycurl
- - pip install pipenv
+ - pip install pipenv --skip-lock
- export LC_ALL=C.UTF-8
- export LANG=C.UTF-8
- pipenv --site-packages install --dev --pre
@@ -144,17 +144,17 @@ variables:
# Test Stage
## --------------------------------------------------
-# Check Python 3.6:
-# extends:
-# - .check_code
-# variables:
-# PYTHON_VERSION: '3.6'
+Check Python 3.6:
+ extends:
+ - .check_code
+ variables:
+ PYTHON_VERSION: '3.6'
-# Check Python 3.7:
-# extends:
-# - .check_code
-# variables:
-# PYTHON_VERSION: '3.7'
+Check Python 3.7:
+ extends:
+ - .check_code
+ variables:
+ PYTHON_VERSION: '3.7'
Check Python 3.8:
extends:
--
GitLab
From f15ad3f79fe28c7492f4af2ff0cc9b57c5a0c119 Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Tue, 23 Jun 2020 16:39:06 -0600
Subject: [PATCH 26/46] move skip lock
---
.gitlab-ci.yml | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 624b2b35..75c436bb 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -65,10 +65,10 @@ variables:
# Install Project Dependencies
- conda config --add channels conda-forge
- conda install python=${PYTHON_VERSION} obspy pycurl
- - pip install pipenv --skip-lock
+ - pip install pipenv
- export LC_ALL=C.UTF-8
- export LANG=C.UTF-8
- - pipenv --site-packages install --dev --pre
+ - pipenv --site-packages install --dev --pre --skip-lock
# Run Code Checks
- pipenv run black --check .
- pipenv run pytest --cov-report xml:cov.xml --cov=test/
--
GitLab
From f098b7116c4808197fb17cfe956dfa0ae4f18993 Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Tue, 23 Jun 2020 17:12:43 -0600
Subject: [PATCH 27/46] comment out 3.7 for testing
---
.gitlab-ci.yml | 10 +++++-----
1 file changed, 5 insertions(+), 5 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 75c436bb..c8aace1f 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -150,11 +150,11 @@ Check Python 3.6:
variables:
PYTHON_VERSION: '3.6'
-Check Python 3.7:
- extends:
- - .check_code
- variables:
- PYTHON_VERSION: '3.7'
+# Check Python 3.7:
+# extends:
+# - .check_code
+# variables:
+# PYTHON_VERSION: '3.7'
Check Python 3.8:
extends:
--
GitLab
From 603e6de0bfe211fe69faef9a14b14a3d038c4f8c Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Wed, 24 Jun 2020 12:30:47 -0600
Subject: [PATCH 28/46] update stuffs
---
.gitlab-ci.yml | 4 ++--
Dockerfile | 2 +-
2 files changed, 3 insertions(+), 3 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index c8aace1f..7be83cf8 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -68,7 +68,7 @@ variables:
- pip install pipenv
- export LC_ALL=C.UTF-8
- export LANG=C.UTF-8
- - pipenv --site-packages install --dev --pre --skip-lock
+ - pipenv --site-packages install --dev --pre
# Run Code Checks
- pipenv run black --check .
- pipenv run pytest --cov-report xml:cov.xml --cov=test/
@@ -144,7 +144,7 @@ variables:
# Test Stage
## --------------------------------------------------
-Check Python 3.6:
+Check_Python_3.6:
extends:
- .check_code
variables:
diff --git a/Dockerfile b/Dockerfile
index 215b2e55..c236da2c 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -1,4 +1,4 @@
-ARG FROM_IMAGE=usgs/centos:8
+ARG FROM_IMAGE=usgs/centos:latest
FROM ${FROM_IMAGE}
LABEL maintainer="Jeremy Fee <jmfee@usgs.gov>"
--
GitLab
From 11cab65d45fcb98617c90b2cbc3fc9ca732bc478 Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Wed, 24 Jun 2020 12:33:19 -0600
Subject: [PATCH 29/46] remove template for test
---
.gitlab-ci.yml | 20 ++++++++++++++++++--
1 file changed, 18 insertions(+), 2 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 7be83cf8..edc9b579 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -145,8 +145,24 @@ variables:
## --------------------------------------------------
Check_Python_3.6:
- extends:
- - .check_code
+ script:
+ - yum install -y wget which
+ - wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh
+ - bash miniconda.sh -b -p $HOME/miniconda
+ - export PATH="$HOME/miniconda/bin:$PATH"
+ - conda config --set always_yes yes --set changeps1 no
+ - conda update --yes conda
+ - conda info -a
+ # Install Project Dependencies
+ - conda config --add channels conda-forge
+ - conda install python=${PYTHON_VERSION} obspy pycurl
+ - pip install pipenv
+ - export LC_ALL=C.UTF-8
+ - export LANG=C.UTF-8
+ - pipenv --site-packages install --dev --pre
+ # Run Code Checks
+ - pipenv run black --check .
+ - pipenv run pytest --cov-report xml:cov.xml --cov=test/
variables:
PYTHON_VERSION: '3.6'
--
GitLab
From a70900caa37d69311af0d81392d9ccc4fa90c83a Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Wed, 24 Jun 2020 13:04:38 -0600
Subject: [PATCH 30/46] update python version
---
.gitlab-ci.yml | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index edc9b579..0e885cb7 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -164,8 +164,7 @@ Check_Python_3.6:
- pipenv run black --check .
- pipenv run pytest --cov-report xml:cov.xml --cov=test/
variables:
- PYTHON_VERSION: '3.6'
-
+ PYTHON_VERSION: '3.7'
# Check Python 3.7:
# extends:
# - .check_code
--
GitLab
From 29ce1db6c3a6dbe48a4eae6c77ddcfb25f8795f9 Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Wed, 24 Jun 2020 13:31:41 -0600
Subject: [PATCH 31/46] update python version
---
.gitlab-ci.yml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 0e885cb7..f04f0056 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -164,7 +164,7 @@ Check_Python_3.6:
- pipenv run black --check .
- pipenv run pytest --cov-report xml:cov.xml --cov=test/
variables:
- PYTHON_VERSION: '3.7'
+ PYTHON_VERSION: 3.7
# Check Python 3.7:
# extends:
# - .check_code
--
GitLab
From 14808741901681c31514ff5d4e1afba0034fd984 Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Wed, 24 Jun 2020 13:32:14 -0600
Subject: [PATCH 32/46] update python version
---
.gitlab-ci.yml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index f04f0056..0e885cb7 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -164,7 +164,7 @@ Check_Python_3.6:
- pipenv run black --check .
- pipenv run pytest --cov-report xml:cov.xml --cov=test/
variables:
- PYTHON_VERSION: 3.7
+ PYTHON_VERSION: '3.7'
# Check Python 3.7:
# extends:
# - .check_code
--
GitLab
From 6cc8ce4648a3102a520dbdc7cce6c1aba643936e Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Wed, 24 Jun 2020 13:45:53 -0600
Subject: [PATCH 33/46] remove quotes?
---
.gitlab-ci.yml | 33 +++++++++------------------------
1 file changed, 9 insertions(+), 24 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 0e885cb7..d831d7bc 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -145,31 +145,16 @@ variables:
## --------------------------------------------------
Check_Python_3.6:
- script:
- - yum install -y wget which
- - wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh
- - bash miniconda.sh -b -p $HOME/miniconda
- - export PATH="$HOME/miniconda/bin:$PATH"
- - conda config --set always_yes yes --set changeps1 no
- - conda update --yes conda
- - conda info -a
- # Install Project Dependencies
- - conda config --add channels conda-forge
- - conda install python=${PYTHON_VERSION} obspy pycurl
- - pip install pipenv
- - export LC_ALL=C.UTF-8
- - export LANG=C.UTF-8
- - pipenv --site-packages install --dev --pre
- # Run Code Checks
- - pipenv run black --check .
- - pipenv run pytest --cov-report xml:cov.xml --cov=test/
+ extends:
+ - .check_code
variables:
- PYTHON_VERSION: '3.7'
-# Check Python 3.7:
-# extends:
-# - .check_code
-# variables:
-# PYTHON_VERSION: '3.7'
+ PYTHON_VERSION: '3.6'
+
+Check Python 3.7:
+ extends:
+ - .check_code
+ variables:
+ PYTHON_VERSION: 3.7
Check Python 3.8:
extends:
--
GitLab
From 5b513991b0e4f2c7bfa5256ba153b7171ce2adda Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Wed, 24 Jun 2020 13:46:37 -0600
Subject: [PATCH 34/46] ok, quotes back
---
.gitlab-ci.yml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index d831d7bc..dedf15e5 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -154,7 +154,7 @@ Check Python 3.7:
extends:
- .check_code
variables:
- PYTHON_VERSION: 3.7
+ PYTHON_VERSION: '3.7'
Check Python 3.8:
extends:
--
GitLab
From c2f474df6a1fd71ae4ba902d08284ef9e0bb4e8d Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Wed, 24 Jun 2020 13:52:48 -0600
Subject: [PATCH 35/46] add skip lock flag
---
.gitlab-ci.yml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index dedf15e5..ea9ddd90 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -68,7 +68,7 @@ variables:
- pip install pipenv
- export LC_ALL=C.UTF-8
- export LANG=C.UTF-8
- - pipenv --site-packages install --dev --pre
+ - pipenv --site-packages install --dev --pre --skip-lock
# Run Code Checks
- pipenv run black --check .
- pipenv run pytest --cov-report xml:cov.xml --cov=test/
--
GitLab
From 26e53ba19490a6004cbf56fb7fd44d0ae5cbb776 Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Wed, 24 Jun 2020 14:09:41 -0600
Subject: [PATCH 36/46] test docker
---
.gitlab-ci.yml | 37 ++++++++++++++++++++++++++++---------
1 file changed, 28 insertions(+), 9 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index ea9ddd90..03eece12 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -25,10 +25,10 @@ variables:
extends:
- .adjust_image_names
image: ${CODE_REGISTRY}/ghsc/hazdev/cloud-formation/hazdev-build-runner:latest
- # only:
- # - master@ghsc/geomag/geomag-algorithms
- # - production@ghsc/geomag/geomag-algorithms
- # - tags@ghsc/geomag/geomag-algorithms
+ only:
+ - master@ghsc/geomag/geomag-algorithms
+ - production@ghsc/geomag/geomag-algorithms
+ - tags@ghsc/geomag/geomag-algorithms
script:
- docker build
--pull
@@ -46,8 +46,8 @@ variables:
- docker push ${INTERNAL_IMAGE_NAME}
- docker image rm ${INTERNAL_IMAGE_NAME}
stage: integration
- # tags:
- # - build
+ tags:
+ - build
variables:
FROM_IMAGE: ${CODE_REGISTRY}/devops/images/usgs/centos:latest
@@ -165,9 +165,28 @@ Check Python 3.8:
## --------------------------------------------------
# Integration Stage
## --------------------------------------------------
-Build Algorithms Image:
- extends:
- - .build_docker_image
+Build_Algorithms_Image:
+ before_script:
+ - IMAGE_NAME=usgs/${APP_NAME}:${CI_COMMIT_REF_SLUG}
+ - IMAGE_NAME=${IMAGE_NAME/:master/:latest}
+ - INTERNAL_IMAGE_NAME=${CI_REGISTRY_IMAGE}/${IMAGE_NAME}
+ - STACK_NAME=${APP_NAME}
+ script:
+ - docker build
+ --pull
+ --build-arg APP_NAME=${APP_NAME}
+ --build-arg FROM_IMAGE=${FROM_IMAGE}
+ --build-arg GIT_BRANCH_NAME=${CI_COMMIT_REF_NAME}
+ --build-arg GIT_COMMIT_SHA=${CI_COMMIT_SHA}
+ --tag local/${IMAGE_NAME} .
+
+ - docker tag local/${IMAGE_NAME} ${IMAGE_NAME}
+ - docker push ${IMAGE_NAME}
+ - docker image rm ${IMAGE_NAME}
+
+ - docker tag local/${IMAGE_NAME} ${INTERNAL_IMAGE_NAME}
+ - docker push ${INTERNAL_IMAGE_NAME}
+ - docker image rm ${INTERNAL_IMAGE_NAME}
variables:
APP_NAME: geomag-algorithms
## --------------------------------------------------
--
GitLab
From 81487a55118107ee5f11a0c2dc57b37872779435 Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Wed, 24 Jun 2020 14:57:34 -0600
Subject: [PATCH 37/46] remove tag for test
---
.gitlab-ci.yml | 2 --
1 file changed, 2 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 03eece12..eed7ebc0 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -180,11 +180,9 @@ Build_Algorithms_Image:
--build-arg GIT_COMMIT_SHA=${CI_COMMIT_SHA}
--tag local/${IMAGE_NAME} .
- - docker tag local/${IMAGE_NAME} ${IMAGE_NAME}
- docker push ${IMAGE_NAME}
- docker image rm ${IMAGE_NAME}
- - docker tag local/${IMAGE_NAME} ${INTERNAL_IMAGE_NAME}
- docker push ${INTERNAL_IMAGE_NAME}
- docker image rm ${INTERNAL_IMAGE_NAME}
variables:
--
GitLab
From ee4252f5883a1676adedf84740d1061f70725e62 Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Wed, 24 Jun 2020 14:58:37 -0600
Subject: [PATCH 38/46] remove other tag
---
.gitlab-ci.yml | 1 -
1 file changed, 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index eed7ebc0..b1641dab 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -178,7 +178,6 @@ Build_Algorithms_Image:
--build-arg FROM_IMAGE=${FROM_IMAGE}
--build-arg GIT_BRANCH_NAME=${CI_COMMIT_REF_NAME}
--build-arg GIT_COMMIT_SHA=${CI_COMMIT_SHA}
- --tag local/${IMAGE_NAME} .
- docker push ${IMAGE_NAME}
- docker image rm ${IMAGE_NAME}
--
GitLab
From d4a7bd95530b03ae15a9b74b25fccac553be023e Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Wed, 24 Jun 2020 15:00:12 -0600
Subject: [PATCH 39/46] add build tag
---
.gitlab-ci.yml | 2 ++
1 file changed, 2 insertions(+)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index b1641dab..3bf39a59 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -184,6 +184,8 @@ Build_Algorithms_Image:
- docker push ${INTERNAL_IMAGE_NAME}
- docker image rm ${INTERNAL_IMAGE_NAME}
+ tags:
+ - build
variables:
APP_NAME: geomag-algorithms
## --------------------------------------------------
--
GitLab
From bf27a519d710f3148e20febd1ab46368f883a6eb Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Wed, 24 Jun 2020 15:01:22 -0600
Subject: [PATCH 40/46] add build tag
---
.gitlab-ci.yml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 3bf39a59..f379bcf9 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -177,7 +177,7 @@ Build_Algorithms_Image:
--build-arg APP_NAME=${APP_NAME}
--build-arg FROM_IMAGE=${FROM_IMAGE}
--build-arg GIT_BRANCH_NAME=${CI_COMMIT_REF_NAME}
- --build-arg GIT_COMMIT_SHA=${CI_COMMIT_SHA}
+ --build-arg GIT_COMMIT_SHA=${CI_COMMIT_SHA} .
- docker push ${IMAGE_NAME}
- docker image rm ${IMAGE_NAME}
--
GitLab
From 6aa3f353be63f8c28c301740de21c7e6e9e3fbb3 Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Wed, 24 Jun 2020 15:02:21 -0600
Subject: [PATCH 41/46] add from image
---
.gitlab-ci.yml | 1 +
1 file changed, 1 insertion(+)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index f379bcf9..ad9b312a 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -188,6 +188,7 @@ Build_Algorithms_Image:
- build
variables:
APP_NAME: geomag-algorithms
+ FROM_IMAGE: ${CODE_REGISTRY}/devops/images/usgs/centos:latest
## --------------------------------------------------
# Deploy Stage
## --------------------------------------------------
--
GitLab
From 2595921eed19350fe2c51e51d34b7ebcd6e36477 Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Wed, 24 Jun 2020 15:03:05 -0600
Subject: [PATCH 42/46] add from image
---
.gitlab-ci.yml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index ad9b312a..219c88fa 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -188,7 +188,7 @@ Build_Algorithms_Image:
- build
variables:
APP_NAME: geomag-algorithms
- FROM_IMAGE: ${CODE_REGISTRY}/devops/images/usgs/centos:latest
+ FROM_IMAGE: usgs/centos:latest
## --------------------------------------------------
# Deploy Stage
## --------------------------------------------------
--
GitLab
From 7c4f1cb592964beed941b53e3d636ddbfb7ce3dd Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Wed, 24 Jun 2020 15:17:47 -0600
Subject: [PATCH 43/46] clean up
---
.gitlab-ci.yml | 23 ++---------------------
1 file changed, 2 insertions(+), 21 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 219c88fa..91201217 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -166,29 +166,10 @@ Check Python 3.8:
# Integration Stage
## --------------------------------------------------
Build_Algorithms_Image:
- before_script:
- - IMAGE_NAME=usgs/${APP_NAME}:${CI_COMMIT_REF_SLUG}
- - IMAGE_NAME=${IMAGE_NAME/:master/:latest}
- - INTERNAL_IMAGE_NAME=${CI_REGISTRY_IMAGE}/${IMAGE_NAME}
- - STACK_NAME=${APP_NAME}
- script:
- - docker build
- --pull
- --build-arg APP_NAME=${APP_NAME}
- --build-arg FROM_IMAGE=${FROM_IMAGE}
- --build-arg GIT_BRANCH_NAME=${CI_COMMIT_REF_NAME}
- --build-arg GIT_COMMIT_SHA=${CI_COMMIT_SHA} .
-
- - docker push ${IMAGE_NAME}
- - docker image rm ${IMAGE_NAME}
-
- - docker push ${INTERNAL_IMAGE_NAME}
- - docker image rm ${INTERNAL_IMAGE_NAME}
- tags:
- - build
+ extends:
+ - .build_docker_image
variables:
APP_NAME: geomag-algorithms
- FROM_IMAGE: usgs/centos:latest
## --------------------------------------------------
# Deploy Stage
## --------------------------------------------------
--
GitLab
From abcd448d94f02ae8c5906e7af5ee1f44c9d05e96 Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Wed, 24 Jun 2020 15:24:17 -0600
Subject: [PATCH 44/46] fix job names
---
.gitlab-ci.yml | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 91201217..f2fe110c 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -144,7 +144,7 @@ variables:
# Test Stage
## --------------------------------------------------
-Check_Python_3.6:
+Check Python 3.6:
extends:
- .check_code
variables:
@@ -165,7 +165,7 @@ Check Python 3.8:
## --------------------------------------------------
# Integration Stage
## --------------------------------------------------
-Build_Algorithms_Image:
+Build Algorithms Docker Image:
extends:
- .build_docker_image
variables:
--
GitLab
From fc6d94a29443108f4f94e6083fe0a20e83753ba3 Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Thu, 25 Jun 2020 10:44:15 -0600
Subject: [PATCH 45/46] remove integration and build steps
---
.gitlab-ci.yml | 149 -------------------------------------------------
1 file changed, 149 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index f2fe110c..87aebece 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -13,44 +13,6 @@ variables:
# Templates
## --------------------------------------------------
-.adjust_image_names:
- before_script:
- - IMAGE_NAME=usgs/${APP_NAME}:${CI_COMMIT_REF_SLUG}
- - IMAGE_NAME=${IMAGE_NAME/:master/:latest}
- - INTERNAL_IMAGE_NAME=${CI_REGISTRY_IMAGE}/${IMAGE_NAME}
- - STACK_NAME=${APP_NAME}
-
-.build_docker_image:
- cache: {}
- extends:
- - .adjust_image_names
- image: ${CODE_REGISTRY}/ghsc/hazdev/cloud-formation/hazdev-build-runner:latest
- only:
- - master@ghsc/geomag/geomag-algorithms
- - production@ghsc/geomag/geomag-algorithms
- - tags@ghsc/geomag/geomag-algorithms
- script:
- - docker build
- --pull
- --build-arg APP_NAME=${APP_NAME}
- --build-arg FROM_IMAGE=${FROM_IMAGE}
- --build-arg GIT_BRANCH_NAME=${CI_COMMIT_REF_NAME}
- --build-arg GIT_COMMIT_SHA=${CI_COMMIT_SHA}
- --tag local/${IMAGE_NAME} .
-
- - docker tag local/${IMAGE_NAME} ${IMAGE_NAME}
- - docker push ${IMAGE_NAME}
- - docker image rm ${IMAGE_NAME}
-
- - docker tag local/${IMAGE_NAME} ${INTERNAL_IMAGE_NAME}
- - docker push ${INTERNAL_IMAGE_NAME}
- - docker image rm ${INTERNAL_IMAGE_NAME}
- stage: integration
- tags:
- - build
- variables:
- FROM_IMAGE: ${CODE_REGISTRY}/devops/images/usgs/centos:latest
-
.check_code:
cache: {}
image: usgs/centos:latest
@@ -83,63 +45,6 @@ variables:
variables:
PYTHON_VERSION: 3.8
-.deploy:
- cache: {}
- extends:
- - .adjust_image_names
- image: ${CODE_REGISTRY}/ghsc/hazdev/cloud-formation/hazdev-build-runner:latest
- script:
- - git clone ${GENERIC_SWARM_DEPLOY_REPO} generic-deploy
- - export REGISTRY=${CI_REGISTRY_IMAGE}
- - cp -v
- generic-deploy/default.config.sh
- generic-deploy/default.funcs.sh
- generic-deploy/deploy.sh
- scripts/.
- - ./scripts/deploy.sh
- stage: deploy
- tags:
- - deploy
- - swarm
-
-.staging:
- only:
- - master@ghsc/geomag/geomag-algorithms
- - tags@ghsc/geomag/geomag-algorithms
-
-.staging01:
- tags:
- - staging01
-
-.staging02:
- tags:
- - staging02
-
-.mage:
- variables:
- USGS_ONLY: 'false'
-
-.mage01:
- tags:
- - mage01
-
-.production:
- except:
- - ^.*beta.*$
- - ^.*-rc.*$
- only:
- - tags@ghsc/geomag/geomag-algorithms
- - production@ghsc/geomag/geomag-algorithms
- when: manual
-
-.production01:
- tags:
- - production01
-
-.production02:
- tags:
- - production02
-
## --------------------------------------------------
# Test Stage
## --------------------------------------------------
@@ -161,57 +66,3 @@ Check Python 3.8:
- .check_code
variables:
PYTHON_VERSION: '3.8'
-
-## --------------------------------------------------
-# Integration Stage
-## --------------------------------------------------
-Build Algorithms Docker Image:
- extends:
- - .build_docker_image
- variables:
- APP_NAME: geomag-algorithms
-## --------------------------------------------------
-# Deploy Stage
-## --------------------------------------------------
-
-# Deploy Production01:
-
-# extends:
-# - .deploy
-# - .production
-# - .production01
-# variables:
-# APP_NAME: geomag-plots
-
-# Deploy Production02:
-# extends:
-# - .deploy
-# - .production
-# - .production02
-# variables:
-# APP_NAME: geomag-plots
-
-# Deploy Staging01:
-# extends:
-# - .deploy
-# - .staging
-# - .staging01
-# variables:
-# APP_NAME: geomag-plots
-
-# Deploy Staging02:
-# extends:
-# - .deploy
-# - .staging
-# - .staging02
-# variables:
-# APP_NAME: geomag-plots
-
-# Deploy Mage01:
-# extends:
-# - .deploy
-# - .staging
-# - .mage
-# - .mage01
-# variables:
-# APP_NAME: geomag-plots
--
GitLab
From 76211dca0634db636ccfc3136b933146f771d9a4 Mon Sep 17 00:00:00 2001
From: Travis Rivers <trivers@contractor.usgs.gov>
Date: Thu, 25 Jun 2020 15:43:51 -0600
Subject: [PATCH 46/46] remove cov, add to gitignore, and update Pipfile
---
.gitignore | 1 +
Pipfile | 2 +-
cov.xml | 1755 ----------------------------------------------------
3 files changed, 2 insertions(+), 1756 deletions(-)
delete mode 100644 cov.xml
diff --git a/.gitignore b/.gitignore
index ffcd96a5..a8cadd0b 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,4 +1,5 @@
.coverage
+cov.xml
.DS_Store
node_modules
*.pyc
diff --git a/Pipfile b/Pipfile
index ad00171f..6576f15b 100644
--- a/Pipfile
+++ b/Pipfile
@@ -21,7 +21,7 @@ databases = {extras = ["postgresql", "sqlite"],version = "*"}
fastapi = "*"
httpx = "==0.11.1"
openpyxl = "*"
-pydantic = "==1.5.1"
+pydantic = "*"
sqlalchemy = "*"
sqlalchemy-utc = "*"
typing = "*"
diff --git a/cov.xml b/cov.xml
deleted file mode 100644
index fcffa53b..00000000
--- a/cov.xml
+++ /dev/null
@@ -1,1755 +0,0 @@
-<?xml version="1.0" ?>
-<coverage branch-rate="0" branches-covered="0" branches-valid="0" complexity="0" line-rate="0.8602" lines-covered="1335" lines-valid="1552" timestamp="1592867049082" version="5.1">
- <!-- Generated by coverage.py: https://coverage.readthedocs.io -->
- <!-- Based on https://raw.githubusercontent.com/cobertura/web/master/htdocs/xml/coverage-04.dtd -->
- <sources>
- <source>/Users/trivers/Desktop/WebApps/Flask/geomag-algorithms/geomag-algorithms/test</source>
- </sources>
- <packages>
- <package branch-rate="0" complexity="0" line-rate="0.7497" name=".">
- <classes>
- <class branch-rate="0" complexity="0" filename="ChannelConverter_test.py" line-rate="0.1336" name="ChannelConverter_test.py">
- <methods/>
- <lines>
- <line hits="1" number="3"/>
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- </classes>
- </package>
- </packages>
-</coverage>
--
GitLab