"""Factory that loads data from earthworm and writes to Edge."""
import obspy.core
from obspy.core.utcdatetime import UTCDateTime
import numpy
from geomagio import TimeseriesFactory, TimeseriesFactoryException
from obspy import earthworm
from ObservatoryMetadata import ObservatoryMetadata
class EdgeFactory(TimeseriesFactory):
def __init__(self, host=None, port=None, observatory=None,
channels=None, type=None, interval=None,
observatoryMetadata=None):
TimeseriesFactory.__init__(self, observatory, channels, type, interval)
self.client = earthworm.Client(host, port)
self.observatoryMetadata = observatoryMetadata or ObservatoryMetadata()
def get_timeseries(self, starttime, endtime, observatory=None,
channels=None, type=None, interval=None):
"""Get timeseries data
Parameters
----------
observatory : str
observatory code.
starttime : obspy.core.UTCDateTime
time of first sample.
endtime : obspy.core.UTCDateTime
time of last sample.
channels : array_like
list of channels to load
type : {'variation', 'quasi-definitive'}
data type.
interval : {'minute', 'second'}
data interval.
Returns
-------
obspy.core.Stream
timeseries object with requested data.
Raises
------
TimeseriesFactoryException
if invalid values are requested, or errors occur while
retrieving timeseries.
"""
observatory = observatory or self.observatory
channels = channels or self.channels
type = type or self.type
interval = interval or self.interval
if starttime > endtime:
raise TimeseriesFactoryException(
'Starttime before endtime "%s" "%s"' % (starttime, endtime))
timeseries = obspy.core.Stream()
for channel in channels:
data = self._get_timeseries(starttime, endtime, observatory,
channel, type, interval)
timeseries += data
self._post_process(timeseries, starttime, endtime, channels)
return timeseries
def put_timeseries(self, starttime, endtime, observatory=None,
channels=None, type=None, interval=None):
"""Put timeseries data
Parameters
----------
observatory : str
observatory code.
starttime : obspy.core.UTCDateTime
time of first sample.
endtime : obspy.core.UTCDateTime
time of last sample.
channels : array_like
list of channels to load
type : {'variation', 'quasi-definitive'}
data type.
interval : {'minute', 'second'}
data interval.
Returns
-------
obspy.core.Stream
timeseries object with requested data.
Raises
------
TimeseriesFactoryException
if invalid values are requested, or errors occur while
retrieving timeseries.
"""
raise NotImplementedError('"put_timeseries" not implemented')
def _convert_trace_to_decimal(self, stream):
"""convert geomag edge traces stored as ints, to decimal by dividing
by 1000.00
Parameters
----------
stream : obspy.core.stream
a stream retrieved from a geomag edge representing one channel.
"""
for trace in stream:
trace.data = numpy.divide(trace.data, 1000.00)
def _get_edge_network(self, observatory, channel, type, interval):
"""get edge network code.
Parameters
----------
observatory : str
observatory code
channel : str
single character channel {H, E, D, Z, F}
type : str
data type {definitive, quasi-definitive, variation}
interval : str
interval length {minute, second}
Returns
-------
network
always NT
"""
return 'NT'
def _get_edge_station(self, observatory, channel, type, interval):
"""get edge station.
Parameters
----------
observatory : str
observatory code
channel : str
single character channel {H, E, D, Z, F}
type : str
data type {definitive, quasi-definitive, variation}
interval : str
interval length {minute, second}
Returns
-------
station
the observatory is returned as the station
"""
return observatory
def _get_edge_channel(self, observatory, channel, type, interval):
"""get edge channel.
Parameters
----------
observatory : str
observatory code
channel : str
single character channel {H, E, D, Z, F}
type : str
data type {definitive, quasi-definitive, variation}
interval : str
interval length {minute, second}
Returns
-------
edge_channel
{MVH, MVE, MVD, etc}
"""
edge_interval_code = self._get_interval_code(interval)
edge_channel = None
if channel == 'D':
edge_channel = edge_interval_code + 'VD'
elif channel == 'E':
edge_channel = edge_interval_code + 'VE'
elif channel == 'F':
edge_channel = edge_interval_code + 'SF'
elif channel == 'H':
edge_channel = edge_interval_code + 'VH'
elif channel == 'Z':
edge_channel = edge_interval_code + 'VZ'
else:
raise TimeseriesFactoryException(
'Unexpected channel code "%s"' % channel)
return edge_channel
def _get_edge_location(self, observatory, channel, type, interval):
"""get edge location.
The edge location code is currently determined by the type
passed in.
Parameters
----------
observatory : str
observatory code
channel : str
single character channel {H, E, D, Z, F}
type : str
data type {definitive, quasi-definitive, variation}
interval : str
interval length {minute, second}
Returns
-------
location
returns an edge location code
"""
location = None
if type == 'variation':
location = 'R0'
elif type == 'quasi-definitive':
location = 'Q0'
elif type == 'definitive':
location = 'D0'
return location
def _get_interval_code(self, interval):
"""get edge interval code.
Converts the metadata interval string, into an edge single character
edge code.
Parameters
----------
observatory : str
observatory code
channel : str
single character channel {H, E, D, Z, F}
type : str
data type {definitive, quasi-definitive, variation}
interval : str
interval length {minute, second}
Returns
-------
interval type
"""
interval_code = None
if interval == 'daily':
interval_code = 'D'
elif interval == 'hourly':
interval_code = 'H'
elif interval == 'minute':
interval_code = 'M'
elif interval == 'second':
interval_code = 'S'
else:
raise TimeseriesFactoryException(
'Unexpected interval "%s"' % interval)
return interval_code
def _get_timeseries(self, starttime, endtime, observatory,
channel, type, interval):
"""get timeseries data for a single channel.
Parameters
----------
starttime: obspy.core.UTCDateTime
the starttime of the requested data
endtime: obspy.core.UTCDateTime
the endtime of the requested data
observatory : str
observatory code
channel : str
single character channel {H, E, D, Z, F}
type : str
data type {definitive, quasi-definitive, variation}
interval : str
interval length {minute, second}
Returns
-------
obspy.core.trace
timeseries trace of the requested channel data
"""
station = self._get_edge_station(observatory, channel,
type, interval)
location = self._get_edge_location(observatory, channel,
type, interval)
network = self._get_edge_network(observatory, channel,
type, interval)
edge_channel = self._get_edge_channel(observatory, channel,
type, interval)
data = self.client.getWaveform(network, station, location,
edge_channel, starttime, endtime)
data.merge()
self._convert_trace_to_decimal(data)
self._set_metadata(data,
observatory, channel, type, interval)
return data
def _clean_timeseries(self, timeseries, starttime, endtime, channels):
for trace in timeseries:
trace_starttime = UTCDateTime(trace.stats.starttime)
trace_endtime = UTCDateTime(trace.stats.endtime)
if trace.stats.starttime > starttime:
cnt = int((trace_starttime - starttime) / trace.stats.delta)
trace.data = numpy.concatenate([
numpy.full(cnt, numpy.nan, dtype=numpy.float64),
trace.data])
trace.stats.starttime = starttime
if trace_endtime < endtime:
cnt = int((endtime - trace_endtime) / trace.stats.delta)
trace.data = numpy.concatenate([
trace.data,
numpy.full(cnt, numpy.nan, dtype=numpy.float64)])
trace.stats.endttime = endtime
def _post_process(self, stream, starttime, endtime, channels):
for trace in stream:
if isinstance(trace.data, numpy.ma.MaskedArray):
trace.data.set_fill_value(numpy.nan)
trace.data = trace.data.filled()
self._clean_timeseries(stream, starttime, endtime, channels)
# TODO add in test for missing channel, if so, make it all nans?
def _set_metadata(self, stream, observatory, channel, type, interval):
"""set metadata for a given stream/channel
Parameters
----------
observatory : str
observatory code
channel : str
edge channel code {MVH, MVE, MVD, ...}
type : str
data type {definitive, quasi-definitive, variation}
interval : str
interval length {minute, second}
"""
for trace in stream:
self.observatoryMetadata.set_metadata(trace.stats, observatory,
channel, type, interval)