diff --git a/.gitignore b/.gitignore
index b8ac68d356aa6f24882439f9b5a4a5711954b845..df0ac6ee95199549db212411b7a64c02beb4bdec 100644
--- a/.gitignore
+++ b/.gitignore
@@ -25,5 +25,3 @@ libs
# Node
node_modules
-package.json
-package-lock.json
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 5347ec02ca800a6cdbe6ca424cd5fd93da2b8f70..9c76c4088c555b97382dcb780fb1e4ef1d422ef6 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -14,6 +14,10 @@ stages:
- build
- trigger
+default:
+ tags:
+ - nshmp
+
####
# Environment Templates
####
@@ -93,17 +97,23 @@ stages:
for arg in ${DOCKER_BUILD_ARGS}; do
BUILD_ARGS="${BUILD_ARGS} --build-arg ${arg}";
done
+ - env_image_name="${REGISTRY_IMAGE}/${CI_PROJECT_NAME}:${ENVIRONMENT}-latest";
+ - latest_image_name="${REGISTRY_IMAGE}/${CI_PROJECT_NAME}:latest";
+ - sha_image_name="${REGISTRY_IMAGE}/${CI_PROJECT_NAME}:${IMAGE_TAG}";
- |
docker build \
${BUILD_ARGS} \
--pull \
- --tag "${CODE_REGISTRY_IMAGE}/${CI_PROJECT_NAME}:${IMAGE_TAG}" \
+ --tag "${latest_image_name}" \
--file "${CI_PROJECT_DIR}/${DOCKERFILE}" \
"${CI_PROJECT_DIR}/.";
- - docker push "${CODE_REGISTRY_IMAGE}/${CI_PROJECT_NAME}:${IMAGE_TAG}";
- - latest_image_name="${CODE_REGISTRY_IMAGE}/${CI_PROJECT_NAME}:${ENVIRONMENT}-latest";
- - docker tag "${CODE_REGISTRY_IMAGE}/${CI_PROJECT_NAME}:${IMAGE_TAG}" "${latest_image_name}";
- docker push "${latest_image_name}";
+ - |
+ docker tag "${latest_image_name}" "${env_image_name}";
+ docker push "${env_image_name}";
+ - |
+ docker tag "${latest_image_name}" "${sha_image_name}";
+ docker push "${sha_image_name}";
- |
printf "
--------
@@ -112,13 +122,15 @@ stages:
" "${CI_PROJECT_NAME}" "${IMAGE_TAG}";
stage: build
tags:
- - build
+ - ${TAG}
variables:
DOCKERFILE: Dockerfile
DOCKER_BUILD_ARGS: |
- BUILD_IMAGE=${DEVOPS_REGISTRY}usgs/centos:latest
- FROM_IMAGE=${DEVOPS_REGISTRY}usgs/centos:latest
+ BUILD_IMAGE=${DEVOPS_REGISTRY}usgs/amazoncorretto:11
+ FROM_IMAGE=${DEVOPS_REGISTRY}usgs/amazoncorretto:11
IMAGE_TAG: ${ENVIRONMENT}-${CI_COMMIT_SHORT_SHA}
+ REGISTRY_IMAGE: ${CI_REGISTRY_IMAGE}
+ TAG: build
####
# Java Templates
@@ -130,34 +142,55 @@ stages:
.java:
image: ${DEVOPS_REGISTRY}usgs/amazoncorretto:11
stage: build
- tags:
- - development
####
# Stage: build
####
-Build Image Haz:
+CHS Registry:
extends:
- .docker-build
+ parallel:
+ matrix:
+ -
+ CI_PROJECT_NAME: nshmp-haz
+ DOCKERFILE: Dockerfile
+ REGISTRY_IMAGE: ${CODE_REGISTRY_IMAGE}
+ TAG: build
+ -
+ CI_PROJECT_NAME: nshmp-haz-ws
+ DOCKERFILE: ws.Dockerfile
+ REGISTRY_IMAGE: ${CODE_REGISTRY_IMAGE}
+ TAG: build
variables:
- CI_PROJECT_NAME: nshmp-haz
DOCKER_BUILD_ARGS: |
BUILD_IMAGE=${DEVOPS_REGISTRY}usgs/amazoncorretto:11
FROM_IMAGE=${DEVOPS_REGISTRY}usgs/amazoncorretto:11
CI_JOB_TOKEN=${CI_JOB_TOKEN}
UPSTREAM_PATH: ghsc/nshmp/nshmp-haz
-Build Image WS:
+Container Registry:
+ before_script:
+ - docker login ${CI_REGISTRY} -u ${CI_REGISTRY_USER} -p ${CI_REGISTRY_PASSWORD}
extends:
- .docker-build
+ parallel:
+ matrix:
+ -
+ CI_PROJECT_NAME: nshmp-haz
+ DOCKERFILE: Dockerfile
+ REGISTRY_IMAGE: ${CI_REGISTRY_IMAGE}
+ TAG: nshmp
+ -
+ CI_PROJECT_NAME: nshmp-haz-ws
+ DOCKERFILE: ws.Dockerfile
+ REGISTRY_IMAGE: ${CI_REGISTRY_IMAGE}
+ TAG: nshmp
variables:
- CI_PROJECT_NAME: nshmp-haz-ws
DOCKER_BUILD_ARGS: |
BUILD_IMAGE=${DEVOPS_REGISTRY}usgs/amazoncorretto:11
FROM_IMAGE=${DEVOPS_REGISTRY}usgs/amazoncorretto:11
CI_JOB_TOKEN=${CI_JOB_TOKEN}
- DOCKERFILE: ws.Dockerfile
UPSTREAM_PATH: ghsc/nshmp/nshmp-haz
Build Project:
@@ -170,8 +203,15 @@ Markdown Lint:
extends:
- .java
script:
+ - ./gradlew nodeInstall
- ./gradlew markdownlint
- allow_failure: true
+
+YAML Lint:
+ extends:
+ - .java
+ script:
+ - ./gradlew nodeInstall
+ - ./gradlew yamllint
Unit Tests:
artifacts:
@@ -192,7 +232,7 @@ Unit Tests:
Trigger nshmp-haz-ws CDK:
needs:
- - Build Image WS
+ - CHS Registry
rules:
-
<<: *development-env
diff --git a/docs/README.md b/docs/README.md
index 6a952c9a80f9eb8e65ade42981d5639c794a3679..fcf5ab4e0f5b0e006ac6ab89dcbb8ab624eae00d 100644
--- a/docs/README.md
+++ b/docs/README.md
@@ -19,6 +19,7 @@ use *nshmp-haz* as well as underlying model implementation details.
* [Calculation Configuration](./pages/Calculation-Configuration.md)
* [Site Specification](./pages/Site-Specification.md)
* [Examples](../../etc/examples)
+ * [Web Services](./pages/Web-Services.md)
* [Hazard Model](./pages/Hazard-Model.md)
* [Model Structure](./pages/Model-Structure.md)
* [Model Files](./pages/Model-Files.md)
diff --git a/docs/pages/Building-&-Running.md b/docs/pages/Building-&-Running.md
index fd91043957d9e256364065d5466269ae8bb5b717..5bafde11cc8c16ef0717f387c459261dbce4512c 100644
--- a/docs/pages/Building-&-Running.md
+++ b/docs/pages/Building-&-Running.md
@@ -8,6 +8,7 @@
* [Site Specification](./Site-Specification.md#site-specification)
* [Examples](../../etc/examples) (or
[on GitLab](https://code.usgs.gov/ghsc/nshmp/nshmp-haz/-/tree/main/etc/examples))
+ * [Web Services](./Web-Services.md)
## Build & Run Options
@@ -73,10 +74,11 @@ files. Disaggregations also have some independent
## Run with [Docker](https://docs.docker.com/install/)
-nshmp-haz is available as a [public image](https://hub.docker.com/repository/docker/usgs/nshmp-haz)
+nshmp-haz is available as a public image from the
+[container registry](https://code.usgs.gov/ghsc/nshmp/nshmp-haz/container_registry)
with tags:
-* `development-latest`: Developer forks
+* `latest`: Refers to the latest updates from the main or production branch
* `staging-latest`: Latest updates associated with the
[main](https://code.usgs.gov/ghsc/nshmp/nshmp-haz/-/tree/main) branch
* `production-latest`: Latest stable release associated with the
@@ -106,11 +108,16 @@ to a minimum of 4 GB.
### Run nshmp-haz in Docker
The *nshmp-haz* application may be run as a Docker container which mitigates the need to install
-Git, Java, or other dependencies besides Docker. A public image is available on
-Docker hub at [https://hub.docker.com/r/usgs/nshmp-haz](https://hub.docker.com/r/usgs/nshmp-haz)
+Git, Java, or other dependencies besides Docker. A public image is available
+from this repository's
+[container registry](https://code.usgs.gov/ghsc/nshmp/nshmp-haz/container_registry).
which can be run with:
```bash
+# Pull docker image
+docker pull code.usgs.gov:5001/ghsc/nshmp/nshmp-haz/nshmp-haz:latest
+
+# Run docker image
docker run \
--env CLASS_NAME=<DisaggCalc | HazardCalc | RateCalc> \
--env IML=<NUMBER> \
@@ -118,7 +125,7 @@ docker run \
--volume /absolute/path/to/sites/file:/app/sites.<geojson | csv> \
--volume /absolute/path/to/config/file:/app/config.json \
--volume /absolute/path/to/output:/app/output \
- usgs/nshmp-haz
+ code.usgs.gov:5001/ghsc/nshmp/nshmp-haz/nshmp-haz-ws
```
Where:
@@ -151,7 +158,7 @@ assumption a GeoJSON [site](./Site-Specification.md) file exists named `sites.ge
git clone https://code.usgs.gov/ghsc/nshmp/nshms/nshm-hawaii.git
# Pull image
-docker pull usgs/nshmp-haz:production-latest
+docker pull code.usgs.gov:5001/ghsc/nshmp/nshmp-haz/nshmp-haz:latest
# Run nshmp-haz HazardCalc
docker run \
@@ -159,7 +166,7 @@ docker run \
--volume "$(pwd)/nshm-hawaii:/app/model" \
--volume "$(pwd)/sites.geojson" \
--volume "$(pwd)/hawaii-hazard-output:/app/output" \
- usgs/nshmp-haz:production-latest
+ code.usgs.gov:5001/ghsc/nshmp/nshmp-haz/nshmp-haz
```
#### [`DisaggCalc`](../../src/main/java/gov/usgs/earthquake/nshmp/DisaggCalc.java) Example
@@ -173,7 +180,7 @@ assumption a GeoJSON [site](./Site-Specification.md) file exists named `sites.ge
git clone https://code.usgs.gov/ghsc/nshmp/nshms/nshm-hawaii.git
# Pull image
-docker pull usgs/nshmp-haz:production-latest
+docker pull code.usgs.gov:5001/ghsc/nshmp/nshmp-haz/nshmp-haz:latest
# Run nshmp-haz DisaggCalc
docker run \
@@ -182,7 +189,7 @@ docker run \
--volume "$(pwd)/nshm-hawaii:/app/model" \
--volume "$(pwd)/sites.geojson" \
--volume "$(pwd)/hawaii-disagg-output:/app/output" \
- usgs/nshmp-haz:production-latest
+ code.usgs.gov:5001/ghsc/nshmp/nshmp-haz/nshmp-haz:latest
```
#### [`RateCalc`](../../src/main/java/gov/usgs/earthquake/nshmp/RateCalc.java) Example
@@ -196,7 +203,7 @@ assumption a GeoJSON [site](./Site-Specification.md) file exists named `sites.ge
git clone https://code.usgs.gov/ghsc/nshmp/nshms/nshm-hawaii.git
# Pull image
-docker pull usgs/nshmp-haz:production-latest
+docker pull code.usgs.gov:5001/ghsc/nshmp/nshmp-haz/nshmp-haz:latest
# Run nshmp-haz RateCalc
docker run \
@@ -204,7 +211,7 @@ docker run \
--volume "$(pwd)/nshm-hawaii:/app/model" \
--volume "$(pwd)/sites.geojson" \
--volume "$(pwd)/hawaii-rate-output:/app/output" \
- usgs/nshmp-haz:production-latest
+ code.usgs.gov:5001/ghsc/nshmp/nshmp-haz/nshmp-haz
```
### Run Customization
@@ -216,13 +223,13 @@ be set with the environment flag (-e, -env):
docker run \
--env JAVA_MEMORY=<MEMORY> \
...
- usgs/nshmp-haz
+ code.usgs.gov:5001/ghsc/nshmp/nshmp-haz/nshmp-haz
# Example
docker run \
--env JAVA_MEMORY="12g" \
...
- usgs/nshmp-haz
+ code.usgs.gov:5001/ghsc/nshmp/nshmp-haz/nshmp-haz
```
Where:
diff --git a/docs/pages/Calculation-Configuration.md b/docs/pages/Calculation-Configuration.md
index 8ed8b9276c78b7c8b2341a2f1df058301e359d27..7f8bf3d8a1e10796ac3f577cf72b7e77e9d2edba 100644
--- a/docs/pages/Calculation-Configuration.md
+++ b/docs/pages/Calculation-Configuration.md
@@ -106,7 +106,7 @@ T ≤ 10 s | 0.000333, 0.000499, 0.000749, 0.00112, 0.00169, 0.00253, <br>0.00
* [Site Specification](./Site-Specification.md#site-specification)
* [Examples](../../etc/examples) (or
[on GitLab](https://code.usgs.gov/ghsc/nshmp/nshmp-haz/-/tree/main/etc/examples))
-* [**Documentation Index**](../README.md)
+* [__Documentation Index__](../README.md)
---
 [U.S. Geological Survey](https://www.usgs.gov)
diff --git a/docs/pages/Functional-PSHA.md b/docs/pages/Functional-PSHA.md
index 24fad10920f01749517d4289841865128226e50e..0b936d6c172bf47d1b0d0bce55f18878a22204d5 100644
--- a/docs/pages/Functional-PSHA.md
+++ b/docs/pages/Functional-PSHA.md
@@ -119,10 +119,10 @@ foreach IMT {
Break the traditional PSHA formulation down into discrete steps and preserve the data associated
with each step:
-* **[1]** Source & Site parameterization
-* **[2]** Ground motion calculation (mean and standard deviation only)
-* **[3]** Exceedance curve calculation (per source)
-* **[4]** Recombine
+* __[1]__ Source & Site parameterization
+* __[2]__ Ground motion calculation (mean and standard deviation only)
+* __[3]__ Exceedance curve calculation (per source)
+* __[4]__ Recombine
Whereas the traditional pipeline looks something like this:
@@ -132,9 +132,9 @@ The functional pipeline can be processed stepwise:
-**Need a disaggregation?** Revisit and parse the results of steps 1 and 2
+__Need a disaggregation?__ Revisit and parse the results of steps 1 and 2
-**Need a response spectra?** Spawn more calculations, one for each IMT, at step 2.
+__Need a response spectra?__ Spawn more calculations, one for each IMT, at step 2.
## Benefits
@@ -161,7 +161,7 @@ The functional pipeline can be processed stepwise:
---
-[**Documentation Index**](../README.md)
+[__Documentation Index__](../README.md)
---
 [U.S. Geological Survey](https://www.usgs.gov)
diff --git a/docs/pages/Ground-Motion-Models.md b/docs/pages/Ground-Motion-Models.md
index f18344593f3d9f43ea5a30c7dfc061cc63c6d653..4419608b253ecbb12e63dbf91aee99498d324aec 100644
--- a/docs/pages/Ground-Motion-Models.md
+++ b/docs/pages/Ground-Motion-Models.md
@@ -44,7 +44,7 @@ The following sample `gmm-config.json` file applies the NGA-West 2 epistemic unc
## GMM Uncertainty Models
-*nshmp-haz* supports additional epistemic uncertainty models derived from the PEER NGA-West 1
+_nshmp-haz_ supports additional epistemic uncertainty models derived from the PEER NGA-West 1
and PEER NGA-West 2 projects. These models both have factors for distance (`Rrup`) bins
Rrup < 10 km, 10 km <= Rrup, < 30 km, and 30 km <= Rrup, and for magnitude bins M < 6.0, 6.0 <=
M < 7.0, and 7.0 <= M. These models can be applied within the `gmm-config.json` file as shown in
@@ -52,7 +52,7 @@ the [GMM Uncertainty](#gmm-uncertainty) section above.
## GMMs By Tectonic Setting
-GMMs available in *nshmp-haz* are tabulated by tectonic setting below. See the javadocs for the
+GMMs available in _nshmp-haz_ are tabulated by tectonic setting below. See the javadocs for the
[GMM Package](https://earthquake.usgs.gov/nshmp/docs/nshmp-lib/gov/usgs/earthquake/nshmp/gmm/package-summary.html)
for implementation details of each GMM and comprehensive lists of GMM IDs.
@@ -93,7 +93,7 @@ NGA-East<br>[Goulet et al., 2017](https://peer.berkeley.edu/sites/default/files/
[Shahjouei and Pezeshk, 2016](http://dx.doi.org/10.1785/0120140367) | NGA_EAST_SEED_SP16 | RotD50 | 3
**Other**
[Atkinson, 2008](http://dx.doi.org/10.1785/0120070199)<br>[Atkinson & Boore, 2011](http://dx.doi.org/10.1785/0120100270) | ATKINSON_08_PRIME | horizontal | 4
-[Atkinson & Boore, 2006](http://dx.doi.org/10.1785/0120050245) | *AB_06_\*<br>140BAR\|200BAR<br>none\|_AB\|_J* | horizontal | 4
+[Atkinson & Boore, 2006](http://dx.doi.org/10.1785/0120050245) | _AB\_06\_\*<br>140BAR\|200BAR<br>none\|\_AB\|\_J_ | horizontal | 4
[Atkinson & Boore, 2006](http://dx.doi.org/10.1785/0120050245)<br>[Atkinson & Boore, 2011](http://dx.doi.org/10.1785/0120100270) | AB_06_PRIME | horizontal | 4
[Campbell, 2003](http://dx.doi.org/10.1785/0120020002) | CAMPBELL_03<br>CAMPBELL_03_AB<br>CAMPBELL_03_J | Geometric mean | 4
[Frankel et al., 1996](https://pubs.usgs.gov/of/1996/532/) | FRANKEL_96<br>FRANKEL_96_AB<br>FRANKEL_96_J | not specified | 4
@@ -112,24 +112,24 @@ for individual NGA-East component model IDs
### Subduction GMMs
-*Note: See the [GMM javadocs](https://earthquake.usgs.gov/nshmp/docs/nshmp-lib/gov/usgs/earthquake/nshmp/gmm/Gmm.html)
-for a comprehensive list of GMM IDs.*
+_Note: See the [GMM javadocs](https://earthquake.usgs.gov/nshmp/docs/nshmp-lib/gov/usgs/earthquake/nshmp/gmm/Gmm.html)
+for a comprehensive list of GMM IDs._
Reference | ID | Component | Notes
:---------|:---|:----------|:------:
**NGA-Subduction**
-[Abrahamson & Gülerce, 2020](https://peer.berkeley.edu/sites/default/files/2020_25.pdf) | *AG_20_\*<br>GLOBAL\|CASCADIA\|ALASKA<br>INTERFACE\|SLAB<br>no basin\|_BASIN* | RotD50
-[Kuehn et al., 2020](https://peer.berkeley.edu/sites/default/files/2020_04_kuehn_final.pdf) | *KBCG_20_\*<br>GLOBAL\|CASCADIA\|ALASKA<br>INTERFACE\|SLAB<br>no basin\|_BASIN* | RotD50
-[Parker et al., 2020](https://peer.berkeley.edu/sites/default/files/2020_03_parker_final.pdf) | *PSHAB_20_\*<br>GLOBAL\|CASCADIA\|ALASKA<br>INTERFACE\|SLAB<br>no basin\|_BASIN* | RotD50
+[Abrahamson & Gülerce, 2020](https://peer.berkeley.edu/sites/default/files/2020_25.pdf) | _AG\_20\_\*<br>GLOBAL\|CASCADIA\|ALASKA<br>INTERFACE\|SLAB<br>no basin\|\_BASIN_ | RotD50
+[Kuehn et al., 2020](https://peer.berkeley.edu/sites/default/files/2020_04_kuehn_final.pdf) | _KBCG\_20\_\*<br>GLOBAL\|CASCADIA\|ALASKA<br>INTERFACE\|SLAB<br>no basin\|\_BASIN_ | RotD50
+[Parker et al., 2020](https://peer.berkeley.edu/sites/default/files/2020_03_parker_final.pdf) | _PSHAB\_20\_\*<br>GLOBAL\|CASCADIA\|ALASKA<br>INTERFACE\|SLAB<br>no basin\|\_BASIN_ | RotD50
**Other**
-[Atkinson & Boore, 2003](http://dx.doi.org/10.1785/0120020156) | *AB_03\*<br>GLOBAL\|CASCADIA<br>INTERFACE\|SLAB<br>none\|_LOW_SAT*| horizontal |
+[Atkinson & Boore, 2003](http://dx.doi.org/10.1785/0120020156) | _AB\_03\*<br>GLOBAL\|CASCADIA<br>INTERFACE\|SLAB<br>none\|\_LOW_SAT_| horizontal |
[Atkinson & Macias, 2009](http://dx.doi.org/10.1785/0120080147) | AM_09_INTERFACE<br>AM_09_INTERFACE_BASIN | Geometric mean | 1
-BC Hydro<br>[Abrahamson et al., 2016](http://dx.doi.org/10.1193/051712EQS188MR) | *BCHYDRO_12_\*<br>INTERFACE\|SLAB<br>none\|_BASIN<br>none\|_BACKARC* | Geometric mean |
-BC Hydro NGA<br>[Abrahamson et al., 2018](https://peer.berkeley.edu/sites/default/files/2018_02_abrahamson_9.10.18.pdf)² | *BCHYDRO_18_NGA_\*<br>INTERFACE\|SLAB<br>none\|_NO_EPI* | Geometric mean | 3
+BC Hydro<br>[Abrahamson et al., 2016](http://dx.doi.org/10.1193/051712EQS188MR) | _BCHYDRO\_12\_\*<br>INTERFACE\|SLAB<br>none\|\_BASIN<br>none\|\_BACKARC_ | Geometric mean |
+BC Hydro NGA<br>[Abrahamson et al., 2018](https://peer.berkeley.edu/sites/default/files/2018_02_abrahamson_9.10.18.pdf)² | _BCHYDRO\_18\_NGA\_\*<br>INTERFACE\|SLAB<br>none\|\_NO_EPI_ | Geometric mean | 3
[McVerry et al., 2000](http://doi.org/10.5459/BNZSEE.39.1.1-58) | MCVERRY_00_INTERFACE<br>MCVERRY_00_SLAB<br>MCVERRY_00_VOLCANIC | Max-horizontal,<br>also supports geometric mean | 4
[Youngs et al., 1997](http://dx.doi.org/10.1785/gssrl.68.1.58) | YOUNGS_97_INTERFACE<br>YOUNGS_97_SLAB | Geometric mean |
-[Zhao et al., 2006](http://dx.doi.org/10.1785/0120050122) | *ZHAO_06_\*<br>INTERFACE\|SLAB<br>none\|_BASIN* | Geometric mean |
-[Zhao et al., 2016](http://dx.doi.org/10.1785/0120150034)<br>[Zhao et al., 2016](http://dx.doi.org/10.1785/0120150056) | ZHAO_16_INTERFACE<br>ZHAO_16_SLAB<br>*ZHAO_16_UPPER_MANTLE* | Geometric mean<br>(random orientation) | 5
+[Zhao et al., 2006](http://dx.doi.org/10.1785/0120050122) | _ZHAO\_06\_\*<br>INTERFACE\|SLAB<br>none\|\_BASIN_ | Geometric mean |
+[Zhao et al., 2016](http://dx.doi.org/10.1785/0120150034)<br>[Zhao et al., 2016](http://dx.doi.org/10.1785/0120150056) | ZHAO_16_INTERFACE<br>ZHAO_16_SLAB<br>_ZHAO_16_UPPER_MANTLE_ | Geometric mean<br>(random orientation) | 5
¹ Interface only
² Likely to be superseded by the final EQ Spectra paper
diff --git a/docs/pages/Logic-Trees-&-Uncertainty.md b/docs/pages/Logic-Trees-&-Uncertainty.md
index 313fb029db6a4a395abeecf9ac0f10d01a28b1d1..e1c4f102267fdbca1a8b024050724bf0ce729123 100644
--- a/docs/pages/Logic-Trees-&-Uncertainty.md
+++ b/docs/pages/Logic-Trees-&-Uncertainty.md
@@ -3,7 +3,7 @@
The following page details the logic trees of epistemic uncertainty considered in NSHMs supported
by *nshmp-haz*. Logic trees are represented in a NSHM using files ending in `-tree.json`.
-[[_TOC_]]
+[[*TOC*]]
## Terminology
@@ -15,34 +15,34 @@ alternative models.
| Description | 2008 | 2014 | 2018 |
|:----------- |:----- |:---- |:---- |
-| CEUS | __0.1__ : AB_06 (140 bar)<br>__0.1__ : AB_06 (200 bar)<br>__0.1__ : CAMPBELL_03<br>__0.1__ : FRANKEL_96<br>__0.1__ : SILVA_02<br>__0.2__ : SOMERVILLE_01<br>__0.2__ : TORO_97<br>__0.1__ : TP_05 | __0.22__ : AB_06'<br>__0.08__ : ATKINSON_08'<br>__0.11__ : CAMPBELL_03<br>__0.06__ : FRANKEL_96<br>__0.15__ : PEZESHK_11<br>__0.06__ : SILVA_02<br>__0.10__ : SOMERVILLE_01<br>__0.11__ : TORO_97<br>__0.11__ : TP_05 | __0.667__ : NGA_EAST_USGS (17)<br>__0.333__ : NGA_EAST_SEEDS (14)<br>(common aleatory variability) |
-| Sigma Epistemic | _(none)_ | _(no change)_ | __0.2__ : USGS Panel<br>__0.8__ : EPRI |
-| Site Aleatory | _(none)_ | _(no change)_ | __0.185, 0.63, 0.185__ : Site ± σ |
+| CEUS | **0.1** : AB_06 (140 bar)<br>**0.1** : AB_06 (200 bar)<br>**0.1** : CAMPBELL_03<br>**0.1** : FRANKEL_96<br>**0.1** : SILVA_02<br>**0.2** : SOMERVILLE_01<br>**0.2** : TORO_97<br>**0.1** : TP_05 | **0.22** : AB_06'<br>**0.08** : ATKINSON_08'<br>**0.11** : CAMPBELL_03<br>**0.06** : FRANKEL_96<br>**0.15** : PEZESHK_11<br>**0.06** : SILVA_02<br>**0.10** : SOMERVILLE_01<br>**0.11** : TORO_97<br>**0.11** : TP_05 | **0.667** : NGA_EAST_USGS (17)<br>**0.333** : NGA_EAST_SEEDS (14)<br>(common aleatory variability) |
+| Sigma Epistemic | *(none)* | *(no change)* | **0.2** : USGS Panel<br>**0.8** : EPRI |
+| Site Aleatory | *(none)* | *(no change)* | **0.185, 0.63, 0.185** : Site ± σ |
## Active Crustal Ground Motion Models
| Description | 2008 | 2014 | 2018 |
|:----------- |:----- |:---- |:---- |
-| WUS | __0.3333__ : BA_08<br>__0.3333__ : CB_08<br>__0.3334__ : CY_08 | __0.22__ : ASK_14<br>__0.22__ : BSSA_14<br>__0.22__ : CB_14<br>__0.22__ : CY_14<br>__0.22__ : IDRISS_14 | __0.25__ : ASK_14<br>__0.25__ : BSSA_14<br>__0.25__ : CB_14<br>__0.25__ : CY_14 |
-| Mean Epistemic | NGA-West1 (M,R)<br>__0.185__ : epi+<br>__0.630__ : off<br>__0.185__ : epi- | NGA-West2 (M,R)<br>__0.185__ : epi+<br>__0.630__ : off<br>__0.185__ : epi- | _(no change)_ |
+| WUS | **0.3333** : BA_08<br>**0.3333** : CB_08<br>**0.3334** : CY_08 | **0.22** : ASK_14<br>**0.22** : BSSA_14<br>**0.22** : CB_14<br>**0.22** : CY_14<br>**0.22** : IDRISS_14 | **0.25** : ASK_14<br>**0.25** : BSSA_14<br>**0.25** : CB_14<br>**0.25** : CY_14 |
+| Mean Epistemic | NGA-West1 (M,R)<br>**0.185** : epi+<br>**0.630** : off<br>**0.185** : epi- | NGA-West2 (M,R)<br>**0.185** : epi+<br>**0.630** : off<br>**0.185** : epi- | *(no change)* |
## Subduction Ground Motion Models
| Description | 2008 | 2014 | 2018 |
|:----------- |:----- |:---- |:---- |
-| Cascadia<br>(interface) | __0.25__ : AB_03 (global)<br>__0.25__ : YOUNGS_97<br>__0.50__ : ZHAO_06 | __0.1__ : AB_03 (global)<br>__0.3__ : AM_09<br>__0.3__ : BCHYDRO_12<br>__0.3__ : ZHAO_06 | __0.3333__ : AM_09<br>__0.3334__ : BCHYDRO_12<br>__0.3333__ : ZHAO_06 |
-| Cascadia<br>(slab) | __0.25__ : AB_03 (global)<br>__0.25__ : AB_03 (cascadia)<br>__0.50__ : YOUNGS_97 | __0.1665__ : AB_03 (global, mod)<br>__0.1665__ : AB_03 (cascadia, mod)<br>__0.3330__ : BCHYDRO_12<br>__0.3340__ : ZHAO_06 | __0.5__ : BCHYDRO_12<br>__0.5__ : ZHAO_06 |
+| Cascadia<br>(interface) | **0.25** : AB_03 (global)<br>**0.25** : YOUNGS_97<br>**0.50** : ZHAO_06 | **0.1** : AB_03 (global)<br>**0.3** : AM_09<br>**0.3** : BCHYDRO_12<br>**0.3** : ZHAO_06 | **0.3333** : AM_09<br>**0.3334** : BCHYDRO_12<br>**0.3333** : ZHAO_06 |
+| Cascadia<br>(slab) | **0.25** : AB_03 (global)<br>**0.25** : AB_03 (cascadia)<br>**0.50** : YOUNGS_97 | **0.1665** : AB_03 (global, mod)<br>**0.1665** : AB_03 (cascadia, mod)<br>**0.3330** : BCHYDRO_12<br>**0.3340** : ZHAO_06 | **0.5** : BCHYDRO_12<br>**0.5** : ZHAO_06 |
## Fault Source Model (CEUS)
| Model | Description | 2008 | 2014 | 2018 |
|:----- |:----------- |:---- |:---- |:---- |
-| Deformation | | __1.0__ : GEO | __0.1__ : BIRD<br>__0.8__ : GEO<br>__0.1__ : ZENG | _(no change)_ |
-| Rupture | | __0.5__ : Full<br> __0.5__ : Partial | _(no change)_ | _(no change)_ |
-| Magnitude Scaling | | __1.0__ : Somerville-01 (area) | _(no change)_ | _(no change)_ |
-| Maximum M¹ | Partial: epistemic | __0.2, 0.6, 0.2__ : M ± 0.2 | _(no change)_ | _(no change)_ |
-| | Full : epistemic | __0.2, 0.6, 0.2__ : M ± 0.2 | _(no change)_ | _(no change)_ |
-| | Full : aleatory | M ± 0.24 (±2σ normal PDF) | _(no change)_ | _(no change)_ |
+| Deformation | | **1.0** : GEO | **0.1** : BIRD<br>**0.8** : GEO<br>**0.1** : ZENG | *(no change)* |
+| Rupture | | **0.5** : Full<br> **0.5** : Partial | *(no change)* | *(no change)* |
+| Magnitude Scaling | | **1.0** : Somerville-01 (area) | *(no change)* | *(no change)* |
+| Maximum M¹ | Partial: epistemic | **0.2, 0.6, 0.2** : M ± 0.2 | *(no change)* | *(no change)* |
+| | Full : epistemic | **0.2, 0.6, 0.2** : M ± 0.2 | *(no change)* | *(no change)* |
+| | Full : aleatory | M ± 0.24 (±2σ normal PDF) | *(no change)* | *(no change)* |
¹ There are a very limited number of fault sources in CEUS
@@ -50,59 +50,59 @@ alternative models.
| Model | Description | 2008 | 2014 | 2018 |
|:----- |:----------- |:---- |:---- |:---- |
-| Deformation | | __1.0__ : GEO | __0.1__ : BIRD<br>__0.8__ : GEO<br>__0.1__ : ZENG | _(no change)_ |
-| Rupture | Partial | __0.333__ : IMW, __0.5__ : PNW | _(no change)_ | _(no change)_ |
-| | Full | __0.667__ : IMW, __0.5__ : PNW | _(no change)_ | _(no change)_ |
-| Magnitude Scaling | | __1.0__ : WC_94 (length) | _(no change)_ | _(no change)_ |
-| Maximum M | Partial: epistemic | __0.2, 0.6, 0.2__ : M ± 0.2 | _(no change)_ | _(no change)_ |
-| | Full : epistemic | __0.2, 0.6, 0.2__ : M ± 0.2 | _(no change)_ | _(no change)_ |
-| | Full : aleatory | M ± 0.24 (±2σ normal PDF) | _(no change)_ | _(no change)_ |
-| Dip | Reverse & Strike-Slip | __1.0__ : assigned | _(no change)_ | _(no change)_ |
-| | Normal | __0.2, 0.6, 0.2__ : 50 ± 10° | __0.2, 0.6, 0.2__ : 50±15° | _(no change)_ |
+| Deformation | | **1.0** : GEO | **0.1** : BIRD<br>**0.8** : GEO<br>**0.1** : ZENG | *(no change)* |
+| Rupture | Partial | **0.333** : IMW, **0.5** : PNW | *(no change)* | *(no change)* |
+| | Full | **0.667** : IMW, **0.5** : PNW | *(no change)* | *(no change)* |
+| Magnitude Scaling | | **1.0** : WC_94 (length) | *(no change)* | *(no change)* |
+| Maximum M | Partial: epistemic | **0.2, 0.6, 0.2** : M ± 0.2 | *(no change)* | *(no change)* |
+| | Full : epistemic | **0.2, 0.6, 0.2** : M ± 0.2 | *(no change)* | *(no change)* |
+| | Full : aleatory | M ± 0.24 (±2σ normal PDF) | *(no change)* | *(no change)* |
+| Dip | Reverse & Strike-Slip | **1.0** : assigned | *(no change)* | *(no change)* |
+| | Normal | **0.2, 0.6, 0.2** : 50 ± 10° | **0.2, 0.6, 0.2** : 50±15° | *(no change)* |
## Grid Source Model
| Model | Description | 2008 | 2014 | 2018 |
|:----- |:----------- |:---- |:---- |:---- |
-| Maximum M | WUS (exceptions) | __1.0__ : 7.0 | __0.9__ : 7.5 (truncated)<br>__0.1__ : 8.0 (tapered) | _(no change)_ |
-| | CEUS (craton) | __0.1__ : 6.6<br>__0.2__ : 6.8<br>__0.5__ : 7.0<br>__0.2__ : 7.2 | __0.2__ : 6.5<br>__0.5__ : 7.0<br>__0.2__ : 7.5<br>__0.1__ : 8.0 | _(no change)_ |
-| Smoothing | | __1.0__ : Fixed |__0.4__ : Adaptive<br>__0.6__ : Fixed | _(no change)_ |
-| Magnitude Scaling | CEUS & WUS | __1.0__ : WC_94 (length) | _(no change)_ | _(no change)_ |
-| Focal Mechanisms | Spatially Varying | __1.0__ : assigned | _(no change)_ | _(no change)_ |
-| Depth (zTor) | WUS, M < 6.5 | __1.0__ : 5.0 km | _(no change)_ | _(no change)_ |
-| | WUS, M ≥ 6.5 | __1.0__ : 1.0 km | _(no change)_ | _(no change)_ |
-| | CEUS, All M | __1.0__ : 5.0 km | _(no change)_ | _(no change)_ |
+| Maximum M | WUS (exceptions) | **1.0** : 7.0 | **0.9** : 7.5 (truncated)<br>**0.1** : 8.0 (tapered) | *(no change)* |
+| | CEUS (craton) | **0.1** : 6.6<br>**0.2** : 6.8<br>**0.5** : 7.0<br>**0.2** : 7.2 | **0.2** : 6.5<br>**0.5** : 7.0<br>**0.2** : 7.5<br>**0.1** : 8.0 | *(no change)* |
+| Smoothing | | **1.0** : Fixed |**0.4** : Adaptive<br>**0.6** : Fixed | *(no change)* |
+| Magnitude Scaling | CEUS & WUS | **1.0** : WC_94 (length) | *(no change)* | *(no change)* |
+| Focal Mechanisms | Spatially Varying | **1.0** : assigned | *(no change)* | *(no change)* |
+| Depth (zTor) | WUS, M < 6.5 | **1.0** : 5.0 km | *(no change)* | *(no change)* |
+| | WUS, M ≥ 6.5 | **1.0** : 1.0 km | *(no change)* | *(no change)* |
+| | CEUS, All M | **1.0** : 5.0 km | *(no change)* | *(no change)* |
## Fault Source Model (CA, UCERF3)
| Model | 2014 | 2018 |
|:----- |:---- |:---- |
-| Fault | __0.5__ : FM3.1<br> __0.5__ : FM3.2 | _(no change)_ |
-| Deformation | __0.1__ : ABM<br>__0.3__ : BIRD<br>__0.3__ : GEO<br>__0.3__ : ZENG | _(no change)_ |
-| Scaling Relationship<br>(mag-area & slip-length)| __0.2__ : ELLS_B<br>__0.2__ : ELLS_B (sqrt-L)<br>__0.2__ : HB_08<br>__0.2__ : SHAW_09<br>__0.2__ : SHAW_09 (csd) | _(no change)_ |
-| Slip Distribution | __0.5__ : Tapered<br>__0.5__ : Boxcar | _(no change)_ |
-| M ≥ 5 rate (yrâ»Â¹) | __0.1__ : 6.5<br>__0.6__ : 7.9<br>__0.3__ : 9.6 | _(no change)_ |
-| Inversion Constraint | __1.0__ : UCERF2 (CH) | _(no change)_ |
-| Fault Mo Rate | __1.0__ : off | _(no change)_ |
+| Fault | **0.5** : FM3.1<br> **0.5** : FM3.2 | *(no change)* |
+| Deformation | **0.1** : ABM<br>**0.3** : BIRD<br>**0.3** : GEO<br>**0.3** : ZENG | *(no change)* |
+| Scaling Relationship<br>(mag-area & slip-length)| **0.2** : ELLS_B<br>**0.2** : ELLS_B (sqrt-L)<br>**0.2** : HB_08<br>**0.2** : SHAW_09<br>**0.2** : SHAW_09 (csd) | *(no change)* |
+| Slip Distribution | **0.5** : Tapered<br>**0.5** : Boxcar | *(no change)* |
+| M ≥ 5 rate (yrâ»Â¹) | **0.1** : 6.5<br>**0.6** : 7.9<br>**0.3** : 9.6 | *(no change)* |
+| Inversion Constraint | **1.0** : UCERF2 (CH) | *(no change)* |
+| Fault Mo Rate | **1.0** : off | *(no change)* |
## Grid Source Model (CA, UCERF3)
| Model | 2014 | 2018 |
|:----- |:---- |:---- |
-| Grid: Maximum M | __0.1__ : 7.3<br>__0.8__ : 7.6<br>__0.1__ : 7.9 | _(no change)_ |
-| Grid: Smoothing | __0.5__ : Adaptive<br>__0.5__ : Fixed | _(no change)_ |
-| Grid: Focal Mechanisms | __1.0__ : assigned | _(no change)_ |
-| Magnitude Scaling | __1.0__ : WC_94 (length) | _(no change)_ |
+| Grid: Maximum M | **0.1** : 7.3<br>**0.8** : 7.6<br>**0.1** : 7.9 | *(no change)* |
+| Grid: Smoothing | **0.5** : Adaptive<br>**0.5** : Fixed | *(no change)* |
+| Grid: Focal Mechanisms | **1.0** : assigned | *(no change)* |
+| Magnitude Scaling | **1.0** : WC_94 (length) | *(no change)* |
## Subduction seismic source model
| Model | 2008 | 2014 | 2018 |
|:----- |:---- |:---- |:---- |
-| Rupture | __0.67__ : Full<br>__0.33__ : Partial | __1.0__ : Full<br>__0.5__ : Partial (segmented)<br>__0.5__ : Partial (unsegmented) | _(no change)_ |
-| Magnitude Scaling | __1.0__ : Youngs et al. (length) | __0.334__ : Strasser et al. (2010)<br>__0.333__ : Murotani et al. (2008)<br>__0.333__ : Papazachos et al. (2004) | _(no change)_ |
-| Magnitude Uncertainty | __0.2, 0.6, 0.2__ : M±0.2 | _(none)_ | _(no change)_ |
-| Depth | __0.5__ : Base<br>__0.2__ : Bottom<br>__0.2__ : Middle<br>__0.1__ : Top | __0.3__ : Bottom<br>__0.5__ : Middle<br>__0.2__ : Top | _(no change)_ |
-| Slab: Maximum M | __1.0__ : 7.2 | __0.9__ : 7.5<br>__0.1__ : 8.0 | _(no change)_ |
+| Rupture | **0.67** : Full<br>**0.33** : Partial | **1.0** : Full<br>**0.5** : Partial (segmented)<br>**0.5** : Partial (unsegmented) | *(no change)* |
+| Magnitude Scaling | **1.0** : Youngs et al. (length) | **0.334** : Strasser et al. (2010)<br>**0.333** : Murotani et al. (2008)<br>**0.333** : Papazachos et al. (2004) | *(no change)* |
+| Magnitude Uncertainty | **0.2, 0.6, 0.2** : M±0.2 | *(none)* | *(no change)* |
+| Depth | **0.5** : Base<br>**0.2** : Bottom<br>**0.2** : Middle<br>**0.1** : Top | **0.3** : Bottom<br>**0.5** : Middle<br>**0.2** : Top | *(no change)* |
+| Slab: Maximum M | **1.0** : 7.2 | **0.9** : 7.5<br>**0.1** : 8.0 | *(no change)* |
* Full: a.k.a. 'characteristic'
* Partial: a.k.a. 'Gutenberg-Richter' or 'floating'
diff --git a/docs/pages/Model-Editions.md b/docs/pages/Model-Editions.md
index b875007e6755685aac757fc9e3d804c765357083..206a5de5641af0303b0bcd23770a1b739535462f 100644
--- a/docs/pages/Model-Editions.md
+++ b/docs/pages/Model-Editions.md
@@ -99,7 +99,7 @@ one of the dynamic editions is likely better.
* [Model Editions](./Model-Editions.md#model-editions)
* [Logic Trees & Uncertainty](./Logic-Trees-&-Uncertainty.md#logic-trees-&-uncertainty)
* [Code Versions](./Code-Versions.md#code-versions)
-* [**Documentation Index**](../README.md)
+* [__Documentation Index__](../README.md)
---
 [U.S. Geological Survey](https://www.usgs.gov)
diff --git a/docs/pages/Model-Structure.md b/docs/pages/Model-Structure.md
index e5f15da236b8807e98ffa01a4291134cfceba922..7af9614f651144e7cac763a1821d63663a66ae4a 100644
--- a/docs/pages/Model-Structure.md
+++ b/docs/pages/Model-Structure.md
@@ -139,9 +139,9 @@ See also: [Grid Source Type](./Source-Types.md#grid-sources)
Zone sources specify a single rate that is distributed over a GeoJSON `Polygon` using point source
rupture models. Presently, there is a 1:1 mapping of source zones to their associated rate files.
-*__Note:__ The rate file approach will be discouraged and/or deprecated in the near future in favor
+_**Note:** The rate file approach will be discouraged and/or deprecated in the near future in favor
of dynamically computing rates over a zone from a single value or `rate-tree.json` when the loading
-a model.*
+a model._
```text
zone/
diff --git a/docs/pages/Site-Specification.md b/docs/pages/Site-Specification.md
index 796f52840d83657b61c127979a1108727fa56bcd..2032f23752936ca1a11a8572a473f6e6024ee3ff 100644
--- a/docs/pages/Site-Specification.md
+++ b/docs/pages/Site-Specification.md
@@ -107,7 +107,7 @@ outside the 'calculation' polygon are set to zero. For an example, see the
* [Site Specification](./Site-Specification.md#site-specification)
* [Examples](../../etc/examples) (or
[on GitLab](https://code.usgs.gov/ghsc/nshmp/nshmp-haz/-/tree/main/etc/examples))
-* [**Documentation Index**](../README.md)
+* [__Documentation Index__](../README.md)
---
 [U.S. Geological Survey](https://www.usgs.gov)
diff --git a/docs/pages/Source-Types.md b/docs/pages/Source-Types.md
index 56ca3c289d02507bdf2d1e4e6101ec0ca0f5762b..90b24bbe9d474e8ba5798e49a92656fcce0d3fc5 100644
--- a/docs/pages/Source-Types.md
+++ b/docs/pages/Source-Types.md
@@ -12,15 +12,15 @@ geometry itself is unknown or very poorly defined.
[[_TOC_]]
-Source models for use with *nshmp-haz* are defined using [JSON](https://www.json.org) and
-[GeoJSON](https://geojson.org). *nshmp-haz* makes determinations about how to represent a source
+Source models for use with _nshmp-haz_ are defined using [JSON](https://www.json.org) and
+[GeoJSON](https://geojson.org). _nshmp-haz_ makes determinations about how to represent a source
based on a GeoJSON geometry type in conjunction with supporting JSON configuration files. Example
source configuration files, `*-config.json`, are provided with each source type description.
Configuration files must be fully specified with `null` JSON member values used to specify 'do
nothing' where appropriate. Any configuration member value in ALL_CAPS indicates the value is one
of a fixed number of options commonly referred to as an enum.
-__Note on Coordinates:__ *nshmp-haz* supports longitude and latitude values in the closed ranges
+__Note on Coordinates:__ _nshmp-haz_ supports longitude and latitude values in the closed ranges
`[-360°‥360°]` and `[-90°‥90°]`. Note, however, that mixing site and/or source coordinates across
the antimeridian (the -180° to 180° transition) will yield unexpected results. For Pacific models
and calculations, always use positive or negative longitudes exclusively.
@@ -43,7 +43,7 @@ Grid sources are represented in a model using a logic tree with a `rupture-sets.
ruptures on each branch. Because gridded seismicity models may be governed by regionally
varying MFD properties (e.g. `mMax`), rupture sets for grids are defined in a JSON array.
-**rupture-sets.json**: Defines an array of one or more rupture sets. Multiple rupture sets are
+__rupture-sets.json__: Defines an array of one or more rupture sets. Multiple rupture sets are
used to model regional differences in MFD properties such as maximum magnitude. The `feature`
member points to the ID of a geojson feature (in the `grid-sources/features` directory) that
defines the bounds of the gridded seismicity source. A grid rupture set `mfd-tree` is never
@@ -62,7 +62,7 @@ defined inline and always points to a tree in a
]
```
-**grid-config.json**: A `grid-depth-map` defines a mapping of magnitude ranges to logic trees of
+__grid-config.json__: A `grid-depth-map` defines a mapping of magnitude ranges to logic trees of
depth distributions. The map can use arbitrary names as keys, but the magnitude ranges defined by
each member must be non-overlapping. The magnitude ranges are interpreted as closed (inclusive) –
open (exclusive), e.g. [mMin..mMax). `maxDepth` constrains the maximum depth of any pseudo fault
@@ -104,7 +104,7 @@ to upper-right). While most gridded rate files contain columns of longitude, lat
some may contain depth values (intraslab sources), maximum magnitude caps, or other values. Scaled
spatial PDFs are the preferred approach to modeling regional rate variations, however it is also
possible to define explicit MFDs at each grid node. To do so, the `spatial-pdf` member
-of a **rupture-sets.json** is replaced with `grid-mfds`. See
+of a __rupture-sets.json__ is replaced with `grid-mfds`. See
`2018 CONUS NSHM > active-crust > grid-sources` for examples of both approaches.
## Zone Sources
@@ -146,7 +146,7 @@ directly.
}
```
-**zone-config.json:** Zone source model configuration is identical to a grid source configuration.
+__zone-config.json:__ Zone source model configuration is identical to a grid source configuration.
```json
{
@@ -182,7 +182,7 @@ they occur in multiple locations on the fault surface with appropriately scaled
associated with finite fault models may be explicitly defined or derived from slip rates.
Fault rupture rates may be modeled using explicitly defined MFDs or logic trees of slip rate.
-**fault-source.geojson**: Defines the geometry and properties of a single source. In the example
+__fault-source.geojson__: Defines the geometry and properties of a single source. In the example
below the presence of a `rate-map` property indicates MFDs should be constructed from the supplied
slip rates and using the weights defined in a `rate-tree.json`.
@@ -229,7 +229,7 @@ slip rates and using the weights defined in a `rate-tree.json`.
}
```
-**fault-config.json**: Controls the point spacing on a gridded surface used to realize the fault
+__fault-config.json__: Controls the point spacing on a gridded surface used to realize the fault
geometry as well as define the models to use for magnitude scaling and rupture floating. Dip
variations and an associated slip-rate scaling model are also supported for normal faults.
@@ -243,7 +243,7 @@ variations and an associated slip-rate scaling model are also supported for norm
}
```
-**rupture-set.json**: When a fault source is represented with a logic tree a
+__rupture-set.json__: When a fault source is represented with a logic tree a
`rupture-set.json` defines the ruptures for each branch. A rupture set _may_ also define custom
properties and _may_ also contain a `sections` member that defines the fault sections for the
rupture set (see note on fault section stitching, [below](#fault-section-stitching)).
@@ -281,7 +281,7 @@ as the joint probability of exceeding ground motions from each independent event
a cluster may only have an mfd-tree composed of `Mfd.Type.SINGLE` MFDs and the mfd-trees must
match across all sources in a cluster (i.e. each mfd-tree has the same IDs and weights).
-**cluster-set.json** A specialized type of rupture set, this file defines the array of fault
+__cluster-set.json__ A specialized type of rupture set, this file defines the array of fault
rupture sets that make up a 'cluster'. As with fault sources, the nested rupture sets in a cluster
set _may_ define `properties` and `sections` members.
@@ -317,10 +317,10 @@ U.S. Fault system source sets require three files: `rupture_set.json`, `sections
logic tree. Note that system sources _may_ have complementary gridded seismicity source models
with matching logic trees.
-**rupture-set.json**: Provides identifying information for the ruptures defined in the adjacant
+__rupture-set.json__: Provides identifying information for the ruptures defined in the adjacant
sections and ruptures files.
-**sections.geojson**: defines a feature collection of the fault sections in a fault network.
+__sections.geojson__: defines a feature collection of the fault sections in a fault network.
Because fault sections are derived by dividing larger faults into subsections, section features
contain several properties that differ from standalone fault section source models (e.g.
`dip-direction`).
@@ -356,7 +356,7 @@ contain several properties that differ from standalone fault section source mode
}
```
-**ruptures.csv**: Defines the properties of every rupture. The last column in a rupture file
+__ruptures.csv__: Defines the properties of every rupture. The last column in a rupture file
defines the ordered array of participating fault section IDs using the shorthand
`1127:1131-2411:2412`. Colons denote continous ranges of sections and hyphens denote breaks.
@@ -383,7 +383,7 @@ using an `slab-config.json` file.
* [Magnitude Frequency Distributions (MFDs)](./Magnitude-Frequency-Distributions.md#magnitude-frequency-distributions)
* [Rupture Scaling Relations](./Rupture-Scaling-Relations.md#rupture-scaling-relations)
* [Ground Motion Models (GMMs)](./Ground-Motion-Models.md#ground-motion-models)
-* [**Documentation Index**](../README.md)
+* [__Documentation Index__](../README.md)
---
 [U.S. Geological Survey](https://www.usgs.gov)
diff --git a/docs/pages/USGS-Models.md b/docs/pages/USGS-Models.md
index 63f3ce6a0cbbb8efcac07365b404d91b1bbb924d..c71012dd4eaa80d49aa8be810561348c85d09e33 100644
--- a/docs/pages/USGS-Models.md
+++ b/docs/pages/USGS-Models.md
@@ -20,10 +20,10 @@ Each model region has a dedicated repository with version tags marking different
* [Conterminous U.S.](https://code.usgs.gov/ghsc/nshmp/nshms/nshm-conus)
* [Hawaii](https://code.usgs.gov/ghsc/nshmp/nshms/nshm-hawaii)
-* Alaska - _update not yet published_
-* Guam & Marianas - _update not yet published_
-* Puerto Rico & U.S. Virgin Islands - _update not yet published_
-* Samoa & Pacific Islands - _update not yet published_
+* Alaska - *update not yet published*
+* Guam & Marianas - *update not yet published*
+* Puerto Rico & U.S. Virgin Islands - *update not yet published*
+* Samoa & Pacific Islands - *update not yet published*
---
diff --git a/docs/pages/Web-Services.md b/docs/pages/Web-Services.md
new file mode 100644
index 0000000000000000000000000000000000000000..3076ca1dbf115e770cb9ec0e4793b87533c32412
--- /dev/null
+++ b/docs/pages/Web-Services.md
@@ -0,0 +1,183 @@
+# Web Services
+
+## Related Pages
+
+* [Building & Running](./Building-&-Running.md#building-&-running)
+ * [Developer Basics](./Developer-Basics.md#developer-basics)
+
+## Build & Run Options
+
+* [Build and run locally](#build-and-run-locally)
+* [Run with Docker](#run-with-docker)
+
+## Build and Run Locally
+
+Building and running *nshmp-haz* web services requires prior
+installation of Git and Java. Please see the [developer basics](./Developer-Basics.md)
+page for system configuration guidance.
+
+### Building
+
+Navigate to a location on your system where you want *nshmp-haz* code to reside, clone the
+repository, and compile:
+
+```bash
+cd /path/to/project/directory
+git clone https://code.usgs.gov/ghsc/nshmp/nshmp-haz.git
+cd nshmp-haz
+./gradlew assemble
+```
+
+This creates a single file, `build/libs/nshmp-haz.jar` that may be used to run the web services.
+`./gradlew` executes the Gradle Wrapper script (there is a `gradlew.bat` equivalent for Windows
+users using the native command prompt). This executes any tasks (e.g. `assemble`) after
+downloading all required dependencies, including Gradle itself.
+
+## Running Web Services
+
+```bash
+java -jar path/to/nshmp-haz.jar --model=path/to/model
+```
+
+Web service runs on [http://localhost:8080/](http://localhost:8080/)
+
+The `--model` argument should contain the path to a single
+hazard source [model](./Hazard-Model.md).
+
+The [National Seisimic Hazard Models (NSHMs)](https://code.usgs.gov/ghsc/nshmp/nshms)
+are available to download.
+
+### Example with NSHM
+
+```bash
+# Build nshmp-haz
+cd /path/to/nshmp-haz
+./gradle assemble
+
+# Download NSHM CONUS
+cd ..
+git clone https://code.usgs.gov/ghsc/nshmp/nshms/nshm-conus
+
+# Run web services
+cd /path/to/nshmp-haz
+java -jar build/libs/nshmp-haz.jar --model=../nshm-conus
+```
+
+Open browser to [http://localhost:8080/](http://localhost:8080/).
+
+## Run with Docker
+
+### Docker Requirments
+
+* [Docker](https://docs.docker.com/install/)
+
+#### Docker Memory on Mac
+
+By default, Docker Desktop for Mac is set to use 2 GB runtime memory. To run nshmp-haz-ws, the
+memory available to Docker must be [increased](https://docs.docker.com/docker-for-mac/#advanced)
+to a minimum of 4 GB.
+
+### Docker Build Options
+
+* [Build and run docker locally](#build-and-run-docker-locally)
+* [Run from Container Registry](#run-from-container-registry)
+
+### Build and Run Docker Locally
+
+The Docker image may be built with the provided web service [Dockerfile](../../ws.Dockerfile).
+
+```bash
+cd /path/to/nshmp-haz
+
+# Build docker image
+docker build -f ws.Dockerfile -t nshmp-haz-ws .
+
+# Run Docker image
+docker run -p 8080:8080 -v "path/to/model:/model" nshmp-haz-ws
+```
+
+Web service runs on [http://localhost:8080/](http://localhost:8080/)
+
+The hazard model is read in via Docker volumes.
+
+#### Local Docker Example with NSHM
+
+```bash
+# Build docker image
+cd /path/to/nshmp-haz
+docker build -f ws.Dockerfile -t nshmp-haz-ws .
+
+# Download NSHM CONUS
+cd ..
+git clone https://code.usgs.gov/ghsc/nshmp/nshms/nshm-conus
+
+# Run web services
+docker run -p 8080:8080 -v "$(pwd):/model" nshmp-haz-ws
+```
+
+Open browser to [http://localhost:8080/](http://localhost:8080/).
+
+### Run from Container Registry
+
+A public Docker image is avaialable from this repository's
+[container registry](https://code.usgs.gov/ghsc/nshmp/nshmp-haz/container_registry).
+
+There are 3 main tags:
+
+* `latest`: Refers to the latest updates from the main or production branch
+* `staging-latest`: Refers to the
+[main](https://code.usgs.gov/ghsc/nshmp/nshmp-haz/-/tree/main) branch and is the latest updates
+* `production-latest`: Refers to the
+[production](https://code.usgs.gov/ghsc/nshmp/nshmp-haz/-/tree/production) branch and is stable
+
+```bash
+# Pull image
+docker pull code.usgs.gov:5001/ghsc/nshmp/nshmp-haz/nshmp-haz-ws:latest
+
+# Run
+docker run -p 8080:8080 -v "/path/to/model:/model" code.usgs.gov:5001/ghsc/nshmp/nshmp-haz/nshmp-haz-ws
+```
+
+Web service runs on [http://localhost:8080/](http://localhost:8080/)
+
+The hazard model is read in via Docker volumes.
+
+#### Container Registry Example with NSHM
+
+```bash
+# Pull image
+docker pull code.usgs.gov:5001/ghsc/nshmp/nshmp-haz/nshmp-haz-ws:latest
+
+# Download NSHM CONUS
+cd ..
+git clone https://code.usgs.gov/ghsc/nshmp/nshms/nshm-conus
+
+# Run web services
+docker run -p 8080:8080 -v "$(pwd):/model" code.usgs.gov:5001/ghsc/nshmp/nshmp-haz/nshmp-haz-ws
+```
+
+Open browser to [http://localhost:8080/](http://localhost:8080/).
+
+### Java Memory
+
+When running **nshmp-haz** web services with Docker
+the initial (Xms) and maximum (Xmx) JVM memory sizes can
+be set with the environment flag (-e, -env):
+
+```bash
+docker run -p <PORT>:8080 -e JAVA_OPTS="-Xms<INITIAL> -Xmx<MAX>" -d usgs/nshmp-haz-ws
+
+# Example
+docker run -p 8080:8080 -e JAVA_OPTS="-Xms1g -Xmx8g" -d usgs/nshmp-haz-ws
+```
+
+Where `<INITIAL>` and `<MAX >`should be set to the desired initial and maximum memory sizes,
+respectively.
+
+---
+
+* [**Documentation Index**](../README.md)
+
+---
+ [U.S. Geological Survey](https://www.usgs.gov)
+National Seismic Hazard Mapping Project ([NSHMP](https://earthquake.usgs.gov/hazards/))
diff --git a/etc/examples/1-hazard-curve/README.md b/etc/examples/1-hazard-curve/README.md
index f136d550c47e40da878ecb9a7535110aab6289b0..ceb307b95d177a4a0df04635cf3fd13af47b9cdb 100644
--- a/etc/examples/1-hazard-curve/README.md
+++ b/etc/examples/1-hazard-curve/README.md
@@ -49,4 +49,4 @@ In the next example, we'll override the model supplied configuration with a cust
---
-* [**Documentation Index**](../../../docs/README.md)
+* [__Documentation Index__](../../../docs/README.md)
diff --git a/etc/examples/2-custom-config/README.md b/etc/examples/2-custom-config/README.md
index fee21af31f3d6d280a35947895c9ec2c7d3c706d..1af09bb27d96c4c662f1c50c0479687584b55a8f 100644
--- a/etc/examples/2-custom-config/README.md
+++ b/etc/examples/2-custom-config/README.md
@@ -47,4 +47,4 @@ __Results directory structure:__
---
-* [**Documentation Index**](../../../docs/README.md)
+* [__Documentation Index__](../../../docs/README.md)
diff --git a/etc/examples/3-sites-file/README.md b/etc/examples/3-sites-file/README.md
index 97ec338b4e351fae1b11053e64817011b271f0ff..2a3c5a404a3837b116464ec3278a55e6f59e523c 100644
--- a/etc/examples/3-sites-file/README.md
+++ b/etc/examples/3-sites-file/README.md
@@ -45,4 +45,4 @@ __Results directory structure:__
---
-* [**Documentation Index**](../../../docs/README.md)
+* [__Documentation Index__](../../../docs/README.md)
diff --git a/etc/examples/4-hazard-map/README.md b/etc/examples/4-hazard-map/README.md
index 641feee179eb50977ff3f2195bb3d9e9f4486cb3..fb600c01254baf11feaf161924c135136ecd3ea5 100644
--- a/etc/examples/4-hazard-map/README.md
+++ b/etc/examples/4-hazard-map/README.md
@@ -37,4 +37,4 @@ __Results directory structure:__
---
-* [**Documentation Index**](../../../docs/README.md)
+* [__Documentation Index__](../../../docs/README.md)
diff --git a/etc/examples/5-complex-model/README.md b/etc/examples/5-complex-model/README.md
index 29a3ee9b4c1a78f253a21432fc6c85a82c2f5092..b76e83b68c9672c6c6d4d35d1ee8bdc1b49526eb 100644
--- a/etc/examples/5-complex-model/README.md
+++ b/etc/examples/5-complex-model/README.md
@@ -76,4 +76,4 @@ __Results directory structure:__
---
-* [**Documentation Index**](../../../docs/README.md)
+* [__Documentation Index__](../../../docs/README.md)
diff --git a/etc/examples/6-enhanced-output/README.md b/etc/examples/6-enhanced-output/README.md
index c20c6d251d44547eab074082843b0167a23713ca..08143bdacfe5eeed59a2d6839b84b7a8fe3f0aed 100644
--- a/etc/examples/6-enhanced-output/README.md
+++ b/etc/examples/6-enhanced-output/README.md
@@ -64,4 +64,4 @@ __Results directory structure:__
---
-* [**Documentation Index**](../../../docs/README.md)
+* [__Documentation Index__](../../../docs/README.md)
diff --git a/etc/examples/7-disaggregation/README.md b/etc/examples/7-disaggregation/README.md
index a01f54397295e2ba55c14878526aae6785b7aff1..e6578d88e4862d1e2fba34b041988f81e03b0536 100644
--- a/etc/examples/7-disaggregation/README.md
+++ b/etc/examples/7-disaggregation/README.md
@@ -65,4 +65,4 @@ will not be saved.
---
-* [**Documentation Index**](../../../docs/README.md)
+* [__Documentation Index__](../../../docs/README.md)
diff --git a/gradle/git-hooks.gradle b/gradle/git-hooks.gradle
index 15c974ecbae549b8a4fe98098f5b538122ab4d7c..2d58b58aff43f6136822fa5c317f01d4bd013fa8 100644
--- a/gradle/git-hooks.gradle
+++ b/gradle/git-hooks.gradle
@@ -10,7 +10,7 @@ githook {
hooks {
"pre-push" {
- task = "markdownlint yamllint spotlessCheck spotbugsMain spotbugsTest"
+ task = "nodeInstall markdownlint yamllint spotlessCheck spotbugsMain spotbugsTest"
}
}
}
diff --git a/gradle/node.gradle b/gradle/node.gradle
index 147caa205eca024368f2e71d634ce8d928388d61..9a368c898f3709392897c9d171f9011138b2661a 100644
--- a/gradle/node.gradle
+++ b/gradle/node.gradle
@@ -5,23 +5,15 @@ node {
version = "${nodeVersion}"
}
-/* Install markdownlint-cli with NPM */
+/* Install Dependencies */
task nodeInstall(type: NpmTask) {
- description "Install markdownlint-clia and yamllint with NPM"
- args = [
- "install",
- "markdownlint-cli",
- "yaml-lint",
- "--save-dev",
- "--loglevel",
- "error"
- ]
+ description "Install dependencies"
+ args = ["install"]
}
/* Run markdownlint */
task markdownlint(type: NpxTask) {
description "Run markdownlint"
- dependsOn nodeInstall
command = "markdownlint"
args = ["**/*.md"]
}
@@ -29,7 +21,6 @@ task markdownlint(type: NpxTask) {
/* Apply markdownlint fixes */
task markdownlintApply(type: NpxTask) {
description "Apply markdownlint fixes"
- dependsOn nodeInstall
command = "markdownlint"
args = [
"**/*.md",
@@ -40,7 +31,6 @@ task markdownlintApply(type: NpxTask) {
/* Run yamllint */
task yamllint(type: NpxTask) {
description "Run yamllint"
- dependsOn nodeInstall
command = "yamllint"
args = [
"**/*.yml",
diff --git a/package-lock.json b/package-lock.json
new file mode 100644
index 0000000000000000000000000000000000000000..086e592dec728ddece8a84d0886b388d9f2fa6fb
--- /dev/null
+++ b/package-lock.json
@@ -0,0 +1,1179 @@
+{
+ "name": "nshmp-haz",
+ "version": "2.0.0",
+ "lockfileVersion": 2,
+ "requires": true,
+ "packages": {
+ "": {
+ "name": "nshmp-haz",
+ "version": "2.0.0",
+ "devDependencies": {
+ "markdownlint-cli": "^0.31.1",
+ "yaml-lint": "^1.2.4"
+ }
+ },
+ "node_modules/ansi-regex": {
+ "version": "2.1.1",
+ "resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-2.1.1.tgz",
+ "integrity": "sha1-w7M6te42DYbg5ijwRorn7yfWVN8=",
+ "dev": true,
+ "engines": {
+ "node": ">=0.10.0"
+ }
+ },
+ "node_modules/ansi-styles": {
+ "version": "2.2.1",
+ "resolved": "https://registry.npmjs.org/ansi-styles/-/ansi-styles-2.2.1.tgz",
+ "integrity": "sha1-tDLdM1i2NM914eRmQ2gkBTPB3b4=",
+ "dev": true,
+ "engines": {
+ "node": ">=0.10.0"
+ }
+ },
+ "node_modules/argparse": {
+ "version": "2.0.1",
+ "resolved": "https://registry.npmjs.org/argparse/-/argparse-2.0.1.tgz",
+ "integrity": "sha512-8+9WqebbFzpX9OR+Wa6O29asIogeRMzcGtAINdpMHHyAg10f05aSFVBbcEqGf/PXw1EjAZ+q2/bEBg3DvurK3Q==",
+ "dev": true
+ },
+ "node_modules/async": {
+ "version": "1.5.2",
+ "resolved": "https://registry.npmjs.org/async/-/async-1.5.2.tgz",
+ "integrity": "sha1-7GphrlZIDAw8skHJVhjiCJL5Zyo=",
+ "dev": true
+ },
+ "node_modules/balanced-match": {
+ "version": "1.0.2",
+ "resolved": "https://registry.npmjs.org/balanced-match/-/balanced-match-1.0.2.tgz",
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+ "dev": true
+ },
+ "node_modules/brace-expansion": {
+ "version": "1.1.11",
+ "resolved": "https://registry.npmjs.org/brace-expansion/-/brace-expansion-1.1.11.tgz",
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+ "dev": true,
+ "dependencies": {
+ "balanced-match": "^1.0.0",
+ "concat-map": "0.0.1"
+ }
+ },
+ "node_modules/camelcase": {
+ "version": "2.1.1",
+ "resolved": "https://registry.npmjs.org/camelcase/-/camelcase-2.1.1.tgz",
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+ "supports-color": "^2.0.0"
+ },
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+ "bin": {
+ "esparse": "bin/esparse.js",
+ "esvalidate": "bin/esvalidate.js"
+ },
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+ "node": ">=4"
+ }
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+ },
+ "engines": {
+ "node": "*"
+ },
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+ "dev": true,
+ "requires": {
+ "camelcase": "^2.0.1",
+ "cliui": "^3.0.3",
+ "decamelize": "^1.1.1",
+ "os-locale": "^1.4.0",
+ "string-width": "^1.0.1",
+ "window-size": "^0.1.4",
+ "y18n": "^3.2.0"
+ }
+ }
+ }
+}
diff --git a/package.json b/package.json
new file mode 100644
index 0000000000000000000000000000000000000000..bf79dd7113165863808bc19f043136bd6555408d
--- /dev/null
+++ b/package.json
@@ -0,0 +1,11 @@
+{
+ "name": "nshmp-haz",
+ "version": "2.0.0",
+ "repository": {
+ "url": "https://code.usgs.gov/ghsc/nshmp/nshmp-haz"
+ },
+ "devDependencies": {
+ "markdownlint-cli": "^0.31.1",
+ "yaml-lint": "^1.2.4"
+ }
+}
diff --git a/settings.gradle b/settings.gradle
index bdd1c7b2080b3804cf304ff37d7a7eea1d726774..960079145fbb1c3abc9d1c9b99a46069fb63d05a 100644
--- a/settings.gradle
+++ b/settings.gradle
@@ -6,20 +6,10 @@ rootProject.name = "nshmp-haz"
/**
* Download default model, nshm-conus-2018.
- *
- * To download the model set environmnet variables:
- * - GIT_NSHMP_USERNAME="The GitLab user name"
- * - GIT_NSHMP_PASSWORD="The GitLab API token"
*/
git {
- defaultAuthGroup "nshmp"
- def user = System.getenv("GIT_NSHMP_USERNAME")
- def pass = System.getenv("GIT_NSHMP_PASSWORD")
-
- if (user && pass) {
- fetch("https://code.usgs.gov/ghsc/nshmp/nshms/nshm-conus.git", {
- name "nshmp-haz-dep--nshm-conus-2018"
- branch "origin/5.1.1"
- })
- }
+ fetch("https://code.usgs.gov/ghsc/nshmp/nshms/nshm-conus.git", {
+ name "nshmp-haz-dep--nshm-conus-2018"
+ tag "5.1.1"
+ })
}
diff --git a/src/main/resources/application.yml b/src/main/resources/application.yml
index c0eb1c75e398256544828f015cc40cb0a926480f..ea2748c5f547965770cc9e86fe7e0ec6b1d6c0aa 100644
--- a/src/main/resources/application.yml
+++ b/src/main/resources/application.yml
@@ -19,6 +19,6 @@ nshmp-haz:
##
# The path to the models.
# To specify the model to use:
- # java -jar build/libs/nshmp-haz.jar --models=<path/to/models>
+ # java -jar build/libs/nshmp-haz.jar --model=<path/to/model>
#
- model-path: ${models:libs/nshmp-haz-dep--nshm-conus-2018}
+ model-path: ${model:libs/nshmp-haz-dep--nshm-conus-2018}
diff --git a/ws.Dockerfile b/ws.Dockerfile
index 35f812588039b169606d7e1b1b61079b0733bd88..4d1e9f44b51e47769210bb9ed2ea87252c669be8 100644
--- a/ws.Dockerfile
+++ b/ws.Dockerfile
@@ -43,7 +43,7 @@ LABEL maintainer="Peter Powers <pmpowers@usgs.gov>, Brandon Clayton <bclayton@us
ENV CONTEXT_PATH="/"
ENV JAVA_OPTS="-Xms2g -Xmx8g"
-ENV MODELS_DIRECTORY="/models"
+ENV MODELS_DIRECTORY="/model"
WORKDIR /app
@@ -58,4 +58,4 @@ ENTRYPOINT java \
-jar \
nshmp-haz.jar \
"-Dmicronaut.server.context-path=${CONTEXT_PATH}" \
- --models="${MODELS_DIRECTORY}";
+ --model="${MODELS_DIRECTORY}";