diff --git a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/Netcdf.java b/src/main/java/gov/usgs/earthquake/nshmp/netcdf/Netcdf.java
deleted file mode 100644
index 5c13df52084f3a2bcac317f429588f895edd4007..0000000000000000000000000000000000000000
--- a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/Netcdf.java
+++ /dev/null
@@ -1,97 +0,0 @@
-package gov.usgs.earthquake.nshmp.netcdf;
-
-import java.nio.file.Files;
-import java.nio.file.Path;
-import java.util.logging.Level;
-import java.util.logging.Logger;
-
-import gov.usgs.earthquake.nshmp.geo.Location;
-import gov.usgs.earthquake.nshmp.gmm.NehrpSiteClass;
-import gov.usgs.earthquake.nshmp.netcdf.data.BoundingData;
-import gov.usgs.earthquake.nshmp.netcdf.data.NetcdfData;
-import gov.usgs.earthquake.nshmp.netcdf.data.NetcdfShape;
-import gov.usgs.earthquake.nshmp.netcdf.data.StaticData;
-import gov.usgs.earthquake.nshmp.netcdf.reader.Reader;
-
-/**
- * Abstarct class for NetCDF types: hazard curves and ground motions.
- *
- * @author U.S. Geological Survey
- */
-public abstract class Netcdf<T> {
-
- protected final Path netcdfPath;
- protected final NetcdfDataType dataType;
- protected final NetcdfData netcdfData;
- protected NetcdfShape netcdfShape;
-
- private static final Logger LOGGER = Logger.getLogger("ucar");
-
- static {
- /* Update ucar logger */
- LOGGER.setLevel(Level.SEVERE);
- }
-
- public Netcdf(Path netcdfPath) {
- this.netcdfPath = netcdfPath;
-
- if (Files.notExists(netcdfPath)) {
- throw new IllegalArgumentException("Path to Netcdf file [" + netcdfPath + "] does not exist");
- }
-
- dataType = NetcdfDataType.getDataType(netcdfPath);
- var reader = getNetcdfData(netcdfPath);
- netcdfData = reader.netcdfData();
- netcdfShape = reader.netcdfShape();
- }
-
- /**
- * Returns the bounding data from a specific site.
- *
- * @param site The site to get the bounding data
- */
- public abstract BoundingData<T> boundingData(Location site);
-
- /**
- * Returns the data type.
- */
- public NetcdfDataType dataType() {
- return dataType;
- }
-
- /**
- * Returns the NetCDF data.
- */
- public abstract NetcdfData netcdfData();
-
- /**
- * Returns the NetCDF path.
- */
- public Path netcdfPath() {
- return netcdfPath;
- }
-
- /**
- * Returns the NetCDF shape`
- */
- public NetcdfShape netcdfShape() {
- return netcdfShape;
- }
-
- /**
- * Returns the static data from a specific site.
- *
- * @param site The site to get the static data
- */
- public abstract StaticData<T> staticData(Location site);
-
- /**
- * Returns the static data from a site and site class.
- *
- * @param site The site to get the static data
- * @param siteClass The site class to get the static data
- */
- public abstract T staticData(Location site, NehrpSiteClass siteClass);
-
- abstract Reader getNetcdfData(Path netcdfPath);
-}
diff --git a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/NetcdfDataType.java b/src/main/java/gov/usgs/earthquake/nshmp/netcdf/NetcdfDataType.java
deleted file mode 100644
index d7bb13c55cb393d6fad60b864e903487580fee39..0000000000000000000000000000000000000000
--- a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/NetcdfDataType.java
+++ /dev/null
@@ -1,32 +0,0 @@
-package gov.usgs.earthquake.nshmp.netcdf;
-
-import java.io.IOException;
-import java.nio.file.Path;
-
-import gov.usgs.earthquake.nshmp.netcdf.reader.NetcdfUtils.Key;
-
-import ucar.nc2.dataset.NetcdfDatasets;
-
-/**
- * Supported NetCDF data types.
- */
-public enum NetcdfDataType {
-
- GROUND_MOTIONS,
- HAZARD_CURVES;
-
- /**
- * Returns the data type read from a NetCDF file with attribute "dataType".
- *
- * @param netcdfPath Path to NetCDF file
- */
- public static NetcdfDataType getDataType(Path netcdfPath) {
- try (var ncd = NetcdfDatasets.openDataset(netcdfPath.toString())) {
- var group = ncd.getRootGroup();
- var vDataType = group.attributes().findAttribute(Key.DATA_TYPE);
- return NetcdfDataType.valueOf(vDataType.getStringValue());
- } catch (IOException e) {
- throw new RuntimeException("Could not read Netcdf file [" + netcdfPath + " ]");
- }
- }
-}
diff --git a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/NetcdfGroundMotions.java b/src/main/java/gov/usgs/earthquake/nshmp/netcdf/NetcdfGroundMotions.java
deleted file mode 100644
index 3a9c943b3b74a5f31ff24cbf626dcb54537f0359..0000000000000000000000000000000000000000
--- a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/NetcdfGroundMotions.java
+++ /dev/null
@@ -1,62 +0,0 @@
-package gov.usgs.earthquake.nshmp.netcdf;
-
-import static com.google.common.base.Preconditions.checkArgument;
-
-import java.io.IOException;
-import java.nio.file.Path;
-
-import gov.usgs.earthquake.nshmp.data.XySequence;
-import gov.usgs.earthquake.nshmp.geo.Location;
-import gov.usgs.earthquake.nshmp.gmm.NehrpSiteClass;
-import gov.usgs.earthquake.nshmp.netcdf.data.BoundingData;
-import gov.usgs.earthquake.nshmp.netcdf.data.NetcdfData;
-import gov.usgs.earthquake.nshmp.netcdf.data.StaticData;
-import gov.usgs.earthquake.nshmp.netcdf.reader.BoundingReaderGroundMotions;
-import gov.usgs.earthquake.nshmp.netcdf.reader.ReaderGroundMotions;
-
-import ucar.nc2.dataset.NetcdfDatasets;
-
-/**
- * NetCDF data for ground motions.
- *
- * @author U.S. Geological Survey
- */
-public class NetcdfGroundMotions extends Netcdf<XySequence> {
-
- public NetcdfGroundMotions(Path netcdfPath) {
- super(netcdfPath);
- }
-
- @Override
- public BoundingData<XySequence> boundingData(Location site) {
- return new BoundingReaderGroundMotions(this, site).boundingData();
- }
-
- @Override
- public NetcdfData netcdfData() {
- return netcdfData;
- }
-
- @Override
- public StaticData<XySequence> staticData(Location site) {
- return boundingData(site).get(site);
- }
-
- @Override
- public XySequence staticData(Location site, NehrpSiteClass siteClass) {
- checkArgument(
- netcdfData.siteClasses().contains(siteClass),
- "Site class [" + siteClass + "] not supported");
- return staticData(site).get(siteClass);
- }
-
- @Override
- ReaderGroundMotions getNetcdfData(Path netcdfPath) {
- try (var ncd = NetcdfDatasets.openDataset(netcdfPath.toString())) {
- var group = ncd.getRootGroup();
- return new ReaderGroundMotions(group);
- } catch (IOException e) {
- throw new RuntimeException("Could not read Netcdf file [" + netcdfPath + " ]");
- }
- }
-}
diff --git a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/NetcdfHazardCurves.java b/src/main/java/gov/usgs/earthquake/nshmp/netcdf/NetcdfHazardCurves.java
deleted file mode 100644
index 4fedc864f22f334c6599266d233e791a589b3003..0000000000000000000000000000000000000000
--- a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/NetcdfHazardCurves.java
+++ /dev/null
@@ -1,62 +0,0 @@
-package gov.usgs.earthquake.nshmp.netcdf;
-
-import static com.google.common.base.Preconditions.checkArgument;
-
-import java.io.IOException;
-import java.nio.file.Path;
-
-import gov.usgs.earthquake.nshmp.geo.Location;
-import gov.usgs.earthquake.nshmp.gmm.NehrpSiteClass;
-import gov.usgs.earthquake.nshmp.netcdf.data.BoundingData;
-import gov.usgs.earthquake.nshmp.netcdf.data.NetcdfDataHazardCurves;
-import gov.usgs.earthquake.nshmp.netcdf.data.StaticData;
-import gov.usgs.earthquake.nshmp.netcdf.data.StaticDataHazardCurves;
-import gov.usgs.earthquake.nshmp.netcdf.reader.BoundingReaderHazardCurves;
-import gov.usgs.earthquake.nshmp.netcdf.reader.ReaderHazardCurves;
-
-import ucar.nc2.dataset.NetcdfDatasets;
-
-/**
- * NetCDF data for hazard curves.
- *
- * @author U.S. Geological Survey
- */
-public class NetcdfHazardCurves extends Netcdf<StaticDataHazardCurves> {
-
- public NetcdfHazardCurves(Path netcdfPath) {
- super(netcdfPath);
- }
-
- @Override
- public BoundingData<StaticDataHazardCurves> boundingData(Location site) {
- return new BoundingReaderHazardCurves(this, site).boundingData();
- }
-
- @Override
- public NetcdfDataHazardCurves netcdfData() {
- return (NetcdfDataHazardCurves) netcdfData;
- }
-
- @Override
- public StaticData<StaticDataHazardCurves> staticData(Location site) {
- return boundingData(site).get(site);
- }
-
- @Override
- public StaticDataHazardCurves staticData(Location site, NehrpSiteClass siteClass) {
- checkArgument(
- netcdfData.siteClasses().contains(siteClass),
- "Site class [" + siteClass + "] not supported");
- return staticData(site).get(siteClass);
- }
-
- @Override
- ReaderHazardCurves getNetcdfData(Path netcdfPath) {
- try (var ncd = NetcdfDatasets.openDataset(netcdfPath.toString())) {
- var group = ncd.getRootGroup();
- return new ReaderHazardCurves(group);
- } catch (IOException e) {
- throw new RuntimeException("Could not read Netcdf file [" + netcdfPath + " ]");
- }
- }
-}
diff --git a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/SiteClass.java b/src/main/java/gov/usgs/earthquake/nshmp/netcdf/SiteClass.java
deleted file mode 100644
index 3d38dc3a675277445b9a50ab902750290320b34b..0000000000000000000000000000000000000000
--- a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/SiteClass.java
+++ /dev/null
@@ -1,104 +0,0 @@
-package gov.usgs.earthquake.nshmp.netcdf;
-
-import java.util.Arrays;
-
-/**
- * This should be imported. For now, it is copied from
- * nshmp-haz-v2/src/gov.usgs.earthquake.nshmp.site.NehrpSiteClass.java
- *
- * Placeholder enum for likely move to Nehrp site class identifier instead of
- * Vs30.
- *
- * <p>These site class identifiers map to NEHRP site clases, but the intent is
- * that they can be used more generally for models in other parts of the world
- * where the GMMs are not necessarily parameterized in terms of vs30 to define
- * site response. For instance, NZ/JP site classes might use A, B, C, and D as a
- * proxy for the local I, II, III, and IV identifiers. In the U.S., models will
- * need to specify the Vs30 value that each site class corresponds to. Although
- * the values were consistent over prior models, now that multiple site classes
- * are supported (in 2018) across the entire U.S., there have been changes
- * proposed for balloting by the BSSC to make the Vs30 definitions of site
- * classes consistent in how they are calculated.
- *
- * @author Peter Powers
- */
-public enum SiteClass {
-
- /*
- * Notes on calculation of Vs30 for site class:
- *
- * Question: Why is it that the soil shear wave velocity shown in the Unified
- * Hazard Tool is not equal to the average of the values shown in ASCE 7-10
- * table 20.3-1?
- *
- * For instance: 259 m/s (Site Class D), from the Unified Hazard Tool, is not
- * equal to (600 ft/s + 1200 ft/s)/2 * .3048 = 274 m/s
- *
- * Answer (Sanaz): we take the geometric mean: sqrt(1200*600)*0.3048 =
- * 258.6314 , which rounds to 259m/s.
- *
- *
- */
-
- /* OLD Vs30, NEW Vs30 */
-
- /* 2000 2000 */
- A("Site class A (Vs30 2000)", 2000),
-
- /* 1500 1500 (new) */
- AB("Site class AB (Vs30 1500)", 1500),
-
- /* 1150 1080 */
- B("Site class B (Vs30 1080)", 1080),
-
- /* 760 760 */
- BC("Site class BC (Vs30 760)", 760),
-
- /* 537 530 */
- C("Site class C (Vs30 530)", 530),
-
- /* 360 365 */
- CD("Site class CD (Vs30 365)", 365),
-
- /* 259 260 */
- D("Site class D (Vs30 260)", 260),
-
- /* 180 185 */
- DE("Site class DE (Vs30 185)", 185),
-
- /* 150 150 (new) */
- E("Site class E (Vs30 150)", 150);
-
- private final String display;
- private final int vs30;
-
- private SiteClass(String display, int vs30) {
- this.display = display;
- this.vs30 = vs30;
- }
-
- /**
- * Returns the Vs30 associated with the {@code SiteClass}.
- */
- public int vs30() {
- return vs30;
- }
-
- /**
- * Returns a {@code SiteClass} associated with the vs30.
- *
- * @param vs30 The vs30 of the site class
- */
- public static SiteClass ofValue(int vs30) {
- return Arrays.stream(values())
- .filter(siteClass -> siteClass.vs30 == vs30)
- .findFirst()
- .orElseThrow(() -> new IllegalArgumentException(
- "No matching site class to Vs30 [" + vs30 + "]"));
- }
-
- @Override
- public String toString() {
- return display;
- }
-}
diff --git a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/data/BoundingData.java b/src/main/java/gov/usgs/earthquake/nshmp/netcdf/data/BoundingData.java
deleted file mode 100644
index 6fcda9d66b1a82164c270f380531c26bc3a8c709..0000000000000000000000000000000000000000
--- a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/data/BoundingData.java
+++ /dev/null
@@ -1,45 +0,0 @@
-package gov.usgs.earthquake.nshmp.netcdf.data;
-
-import static com.google.common.base.Preconditions.checkState;
-
-import java.util.HashMap;
-import java.util.LinkedHashMap;
-import java.util.Map;
-
-import gov.usgs.earthquake.nshmp.geo.Location;
-
-/**
- * Location to static data mapper.
- *
- * @author U.S. Geological Survey
- */
-public class BoundingData<T> extends LinkedHashMap<Location, StaticData<T>> {
-
- public BoundingData() {}
-
- private BoundingData(Map<Location, StaticData<T>> boundingHazards) {
- putAll(boundingHazards);
- }
-
- public static <T> Builder<T> builder() {
- return new Builder<T>();
- }
-
- public static class Builder<T> {
- Map<Location, StaticData<T>> boundingData;
-
- private Builder() {
- boundingData = new HashMap<>();
- }
-
- public Builder<T> put(Location location, StaticData<T> staticData) {
- boundingData.put(location, staticData);
- return this;
- }
-
- public BoundingData<T> build() {
- checkState(!boundingData.isEmpty(), "Must add static data");
- return new BoundingData<>(boundingData);
- }
- }
-}
diff --git a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/data/NetcdfData.java b/src/main/java/gov/usgs/earthquake/nshmp/netcdf/data/NetcdfData.java
deleted file mode 100644
index 41b07528eb87a8c6c70f774b008c765736627b6f..0000000000000000000000000000000000000000
--- a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/data/NetcdfData.java
+++ /dev/null
@@ -1,156 +0,0 @@
-package gov.usgs.earthquake.nshmp.netcdf.data;
-
-import static com.google.common.base.Preconditions.checkState;
-
-import java.util.Arrays;
-import java.util.List;
-import java.util.Map;
-import java.util.TreeMap;
-
-import gov.usgs.earthquake.nshmp.geo.Bounds;
-import gov.usgs.earthquake.nshmp.geo.Location;
-import gov.usgs.earthquake.nshmp.geo.Regions;
-import gov.usgs.earthquake.nshmp.gmm.Imt;
-import gov.usgs.earthquake.nshmp.gmm.NehrpSiteClass;
-
-/**
- * Data info from the NetCDF file.
- *
- * @author U.S. Geological Survey
- */
-public class NetcdfData {
- private final Bounds bounds;
- private final List<Imt> imts;
- private final double[] latitudes;
- private final double[] longitudes;
- private final ScienceBaseMetadata scienceBaseMetadata;
- private final List<NehrpSiteClass> siteClasses;
- private final Map<NehrpSiteClass, Double> vs30Map;
-
- protected NetcdfData(Builder builder) {
- var minLatitude = Arrays.stream(builder.latitudes).min().getAsDouble();
- var maxLatitude = Arrays.stream(builder.latitudes).max().getAsDouble();
- var minLongitude = Arrays.stream(builder.longitudes).min().getAsDouble();
- var maxLongitude = Arrays.stream(builder.longitudes).max().getAsDouble();
-
- bounds = Regions.createRectangular(
- "",
- Location.create(minLongitude, minLatitude),
- Location.create(maxLongitude, maxLatitude)).bounds();
- imts = builder.imts;
- latitudes = builder.latitudes;
- longitudes = builder.longitudes;
- scienceBaseMetadata = builder.scienceBaseMetadata;
- siteClasses = builder.siteClasses;
- vs30Map = builder.vs30Map;
- }
-
- /**
- * Returns the bounds
- */
- public Bounds bounds() {
- return bounds;
- }
-
- /**
- * Return the Imts
- */
- public List<Imt> imts() {
- return List.copyOf(imts);
- }
-
- /**
- * Returns the latitudes.
- */
- public double[] latitudes() {
- return latitudes.clone();
- }
-
- /**
- * Returns the longitudes.
- */
- public double[] longitudes() {
- return longitudes.clone();
- }
-
- /**
- * Returns the science base info
- */
- public ScienceBaseMetadata scienceBaseMetadata() {
- return scienceBaseMetadata;
- }
-
- /**
- * Return the site classes
- */
- public List<NehrpSiteClass> siteClasses() {
- return List.copyOf(siteClasses);
- }
-
- /**
- * Returns the VS30 map
- */
- public Map<NehrpSiteClass, Double> vs30Map() {
- return new TreeMap<>(vs30Map);
- }
-
- public static Builder builder() {
- return new Builder();
- }
-
- public static class Builder {
- List<Imt> imts;
- double[] latitudes;
- double[] longitudes;
- List<NehrpSiteClass> siteClasses;
- ScienceBaseMetadata scienceBaseMetadata;
- Map<NehrpSiteClass, Double> vs30Map;
-
- Builder() {}
-
- public Builder imts(List<Imt> imts) {
- this.imts = imts;
- return this;
- }
-
- public Builder latitudes(double[] latitudes) {
- this.latitudes = latitudes;
- return this;
- }
-
- public Builder longitudes(double[] longitudes) {
- this.longitudes = longitudes;
- return this;
- }
-
- public Builder scienceBaseMetadata(ScienceBaseMetadata scienceBaseMetadata) {
- this.scienceBaseMetadata = scienceBaseMetadata;
- return this;
- }
-
- public Builder siteClasses(List<NehrpSiteClass> siteClasses) {
- this.siteClasses = siteClasses;
- return this;
- }
-
- public Builder vs30Map(Map<NehrpSiteClass, Double> vs30Map) {
- this.vs30Map = vs30Map;
- return this;
- }
-
- public NetcdfData build() {
- checkBuildState();
- return new NetcdfData(this);
- }
-
- void checkBuildState() {
- checkState(!imts.isEmpty(), "Must add imts");
- checkState(!(latitudes.length == 0), "Must add latitude");
- checkState(!(longitudes.length == 0), "Must add longitudes");
- checkState(scienceBaseMetadata != null, "Must set science base metadata");
- checkState(!siteClasses.isEmpty(), "Must add site classes");
- checkState(!vs30Map.isEmpty(), "Must add vs30s");
- }
- }
-
-}
diff --git a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/data/NetcdfDataHazardCurves.java b/src/main/java/gov/usgs/earthquake/nshmp/netcdf/data/NetcdfDataHazardCurves.java
deleted file mode 100644
index af9df24c6ad72820f09624a47ffae0dd24f9c11d..0000000000000000000000000000000000000000
--- a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/data/NetcdfDataHazardCurves.java
+++ /dev/null
@@ -1,101 +0,0 @@
-package gov.usgs.earthquake.nshmp.netcdf.data;
-
-import static com.google.common.base.Preconditions.checkState;
-
-import java.util.List;
-import java.util.Map;
-
-import gov.usgs.earthquake.nshmp.gmm.Imt;
-import gov.usgs.earthquake.nshmp.gmm.NehrpSiteClass;
-
-/**
- * NetCDF data for hazard curves.
- *
- * @author U.S. Geological Survey
- */
-public class NetcdfDataHazardCurves extends NetcdfData {
-
- private final Map<Imt, double[]> imls;
-
- NetcdfDataHazardCurves(Builder builder) {
- super(builder);
- imls = builder.imls;
- }
-
- /**
- * Returns the Imls
- */
- public Map<Imt, double[]> imls() {
- return imls;
- }
-
- /**
- * Returns the number of Imls
- */
- public int nIml() {
- return imls.values().iterator().next().length;
- }
-
- public static Builder builder() {
- return new Builder();
- }
-
- public static class Builder extends NetcdfData.Builder {
- Map<Imt, double[]> imls;
-
- Builder() {
- super();
- }
-
- public Builder imls(Map<Imt, double[]> imls) {
- this.imls = imls;
- return this;
- }
-
- @Override
- public Builder imts(List<Imt> imts) {
- super.imts(imts);
- return this;
- }
-
- @Override
- public Builder latitudes(double[] latitudes) {
- super.latitudes(latitudes);
- return this;
- }
-
- @Override
- public Builder longitudes(double[] longitudes) {
- super.longitudes(longitudes);
- return this;
- }
-
- @Override
- public Builder scienceBaseMetadata(ScienceBaseMetadata scienceBaseMetadata) {
- super.scienceBaseMetadata(scienceBaseMetadata);
- return this;
- }
-
- @Override
- public Builder siteClasses(List<NehrpSiteClass> siteClasses) {
- super.siteClasses(siteClasses);
- return this;
- }
-
- @Override
- public Builder vs30Map(Map<NehrpSiteClass, Double> vs30Map) {
- super.vs30Map(vs30Map);
- return this;
- }
-
- public NetcdfDataHazardCurves build() {
- checkBuildState();
- return new NetcdfDataHazardCurves(this);
- }
-
- void checkBuildState() {
- super.checkBuildState();
- checkState(!imls.isEmpty(), "Must add imls");
- }
- }
-}
diff --git a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/data/NetcdfShape.java b/src/main/java/gov/usgs/earthquake/nshmp/netcdf/data/NetcdfShape.java
deleted file mode 100644
index 698207bf4ae2a9d5c1c4cd5b24ad11ac491a8633..0000000000000000000000000000000000000000
--- a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/data/NetcdfShape.java
+++ /dev/null
@@ -1,139 +0,0 @@
-package gov.usgs.earthquake.nshmp.netcdf.data;
-
-import static com.google.common.base.Preconditions.checkState;
-
-import java.util.ArrayList;
-import java.util.Collections;
-import java.util.HashMap;
-import java.util.List;
-import java.util.Map;
-import java.util.Optional;
-
-/**
- * Create NetCDF shapes and keep track of indices.
- *
- * @author U.S. Geological Survey
- */
-public class NetcdfShape {
-
- private final Map<IndexKey, Integer> indexMap;
-
- private NetcdfShape(Builder builder) {
- indexMap = builder.indexMap;
- }
-
- /**
- * Returns builder to build a NetCDF shape.
- */
- public static Builder builder() {
- return new Builder();
- }
-
- /**
- * Returns a builder to build an array shape for NetCDF origin and shapes.
- */
- public BuildShape buildShape() {
- return new BuildShape();
- }
-
- public class BuildShape {
- List<KeySize> keySizes;
- Optional<Integer> pad = Optional.empty();
- boolean reduce = false;
-
- private BuildShape() {
- keySizes = new ArrayList<>();
- }
-
- /**
- * Add key and associated size for shape.
- *
- * @param key The key
- * @param size The size
- */
- public BuildShape add(IndexKey key, int size) {
- checkState(indexMap.containsKey(key), String.format("Key [%s] not found in shape", key));
- keySizes.add(new KeySize(key, size));
- return this;
- }
-
- /**
- * Change to padding value of 0.
- *
- * Not used if reducing shape.
- *
- * @param value The value to pad the array shape
- */
- public BuildShape pad(int value) {
- pad = Optional.of(value);
- return this;
- }
-
- /**
- * Reduce the array to only added keys in builder.
- */
- public BuildShape reduce() {
- reduce = true;
- return this;
- }
-
- /**
- * Returns the shape array.
- */
- public int[] build() {
- if (reduce) {
- var reducePad = -1;
- return build(reducePad).stream()
- .mapToInt(Integer::intValue)
- .filter(val -> val != reducePad)
- .toArray();
- } else {
- return build(pad.orElse(0)).stream().mapToInt(Integer::intValue).toArray();
- }
- }
-
- private List<Integer> build(int pad) {
- var shape = new ArrayList<>(Collections.nCopies(indexMap.size(), pad));
- keySizes.forEach(keySize -> {
- shape.set(indexMap.get(keySize.indexKey), keySize.size);
- });
-
- return shape;
- }
- }
-
- public static class KeySize {
- public final IndexKey indexKey;
- public final int size;
-
- private KeySize(IndexKey indexKey, int size) {
- this.indexKey = indexKey;
- this.size = size;
- }
- }
-
- public static enum IndexKey {
- IML,
- IMT,
- LATITUDE,
- LONGITUDE,
- SITE_CLASS;
- }
-
- public static class Builder {
- Map<IndexKey, Integer> indexMap;
-
- private Builder() {
- indexMap = new HashMap<>();
- }
-
- public Builder add(IndexKey key, int index) {
- indexMap.put(key, index);
- return this;
- }
-
- public NetcdfShape build() {
- return new NetcdfShape(this);
- }
- }
-}
diff --git a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/data/ScienceBaseInfo.java b/src/main/java/gov/usgs/earthquake/nshmp/netcdf/data/ScienceBaseInfo.java
deleted file mode 100644
index a57b2422537863b90b4404d86dfadfd4eb2b6e2a..0000000000000000000000000000000000000000
--- a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/data/ScienceBaseInfo.java
+++ /dev/null
@@ -1,38 +0,0 @@
-package gov.usgs.earthquake.nshmp.netcdf.data;
-
-public class ScienceBaseInfo {
-
- final String id;
- final String file;
- final CatalogFileInfo[] files;
- final String scienceBaseVersion;
- final String title;
- final String url;
-
- ScienceBaseInfo(
- String id,
- String file,
- CatalogFileInfo[] files,
- String scienceBaseVersion,
- String title,
- String url) {
- this.id = id;
- this.file = file;
- this.files = files;
- this.scienceBaseVersion = scienceBaseVersion;
- this.title = title;
- this.url = url;
- }
-
- static class CatalogFileInfo {
- final String file;
- final String siteClass;
- final String vs30;
-
- CatalogFileInfo(String file, String siteClass, String vs30) {
- this.file = file;
- this.siteClass = siteClass;
- this.vs30 = vs30;
- }
- }
-}
diff --git a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/data/ScienceBaseMetadata.java b/src/main/java/gov/usgs/earthquake/nshmp/netcdf/data/ScienceBaseMetadata.java
deleted file mode 100644
index 556087b6420b90c137bbc5d126dad2854e149377..0000000000000000000000000000000000000000
--- a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/data/ScienceBaseMetadata.java
+++ /dev/null
@@ -1,38 +0,0 @@
-package gov.usgs.earthquake.nshmp.netcdf.data;
-
-import com.google.common.reflect.TypeToken;
-import com.google.gson.Gson;
-
-import gov.usgs.earthquake.nshmp.netcdf.NetcdfDataType;
-import gov.usgs.earthquake.nshmp.netcdf.reader.NetcdfUtils.Key;
-
-import ucar.nc2.Group;
-
-public class ScienceBaseMetadata {
-
- public final String catalogId;
- public final NetcdfDataType dataType;
- public final String description;
- public final double gridStep;
- public final String history;
- public final String label;
- public final String region;
- public final ScienceBaseInfo[] scienceBaseInfo;
- public final int year;
-
- static final Gson GSON = new Gson();
-
- public ScienceBaseMetadata(Group targetGroup) {
- catalogId = targetGroup.findAttribute(Key.ID).getStringValue();
- dataType = NetcdfDataType.valueOf(targetGroup.findAttribute(Key.DATA_TYPE).getStringValue());
- description = targetGroup.findAttribute(Key.DESCRIPTION).getStringValue();
- gridStep = targetGroup.findAttribute(Key.GRID_STEP).getNumericValue().doubleValue();
- history = targetGroup.findAttribute(Key.HISTORY).getStringValue();
- label = targetGroup.findAttribute(Key.LABEL).getStringValue();
- region = targetGroup.findAttribute(Key.REGION).getStringValue();
- scienceBaseInfo = GSON.fromJson(
- targetGroup.findAttribute(Key.SCIENCE_BASE_INFO).getStringValue(),
- new TypeToken<ScienceBaseInfo[]>() {}.getType());
- year = targetGroup.findAttribute(Key.YEAR).getNumericValue().intValue();
- }
-}
diff --git a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/data/StaticData.java b/src/main/java/gov/usgs/earthquake/nshmp/netcdf/data/StaticData.java
deleted file mode 100644
index 21642ae253a2c6c1974a48a8a8779e7aeb2505e6..0000000000000000000000000000000000000000
--- a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/data/StaticData.java
+++ /dev/null
@@ -1,46 +0,0 @@
-package gov.usgs.earthquake.nshmp.netcdf.data;
-
-import static com.google.common.base.Preconditions.checkState;
-
-import java.util.EnumMap;
-
-import gov.usgs.earthquake.nshmp.gmm.NehrpSiteClass;
-
-/**
- * NEHRP site class to data mapper.
- *
- * @author U.S. Geological Survey
- */
-public class StaticData<T> extends EnumMap<NehrpSiteClass, T> {
-
- public StaticData() {
- super(NehrpSiteClass.class);
- }
-
- StaticData(EnumMap<NehrpSiteClass, T> data) {
- super(NehrpSiteClass.class);
- putAll(data);
- }
-
- public static <T> Builder<T> builder() {
- return new Builder<T>();
- }
-
- public static class Builder<T> {
- EnumMap<NehrpSiteClass, T> data;
-
- private Builder() {
- data = new EnumMap<>(NehrpSiteClass.class);
- }
-
- public Builder<T> put(NehrpSiteClass siteClass, T data) {
- this.data.put(siteClass, data);
- return this;
- }
-
- public StaticData<T> build() {
- checkState(!data.isEmpty(), "Must add data");
- return new StaticData<T>(data);
- }
- }
-}
diff --git a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/data/StaticDataHazardCurves.java b/src/main/java/gov/usgs/earthquake/nshmp/netcdf/data/StaticDataHazardCurves.java
deleted file mode 100644
index e630a1eed18bc099d7265af88932976432754eb9..0000000000000000000000000000000000000000
--- a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/data/StaticDataHazardCurves.java
+++ /dev/null
@@ -1,47 +0,0 @@
-package gov.usgs.earthquake.nshmp.netcdf.data;
-
-import static com.google.common.base.Preconditions.checkState;
-
-import java.util.EnumMap;
-
-import gov.usgs.earthquake.nshmp.data.XySequence;
-import gov.usgs.earthquake.nshmp.gmm.Imt;
-
-/**
- * IMT to XySequence mapper.
- *
- * @auther U.S. Geological Survey
- */
-public class StaticDataHazardCurves extends EnumMap<Imt, XySequence> {
-
- public StaticDataHazardCurves() {
- super(Imt.class);
- }
-
- private StaticDataHazardCurves(EnumMap<Imt, XySequence> staticHazard) {
- super(Imt.class);
- putAll(staticHazard);
- }
-
- public static Builder builder() {
- return new Builder();
- }
-
- public static class Builder {
- EnumMap<Imt, XySequence> staticHazard;
-
- private Builder() {
- staticHazard = new EnumMap<>(Imt.class);
- }
-
- public Builder put(Imt imt, XySequence xySequence) {
- staticHazard.put(imt, xySequence);
- return this;
- }
-
- public StaticDataHazardCurves build() {
- checkState(!staticHazard.isEmpty(), "Must add hazards");
- return new StaticDataHazardCurves(staticHazard);
- }
- }
-}
diff --git a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/reader/BoundingReader.java b/src/main/java/gov/usgs/earthquake/nshmp/netcdf/reader/BoundingReader.java
deleted file mode 100644
index 83f5c2e3cfab7d21a6a56b1678b7b6667cc80cb1..0000000000000000000000000000000000000000
--- a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/reader/BoundingReader.java
+++ /dev/null
@@ -1,135 +0,0 @@
-package gov.usgs.earthquake.nshmp.netcdf.reader;
-
-import java.util.ArrayList;
-import java.util.List;
-import java.util.stream.Collectors;
-
-import gov.usgs.earthquake.nshmp.geo.Location;
-import gov.usgs.earthquake.nshmp.geo.LocationList;
-import gov.usgs.earthquake.nshmp.netcdf.Netcdf;
-import gov.usgs.earthquake.nshmp.netcdf.data.BoundingData;
-import gov.usgs.earthquake.nshmp.netcdf.data.NetcdfData;
-import gov.usgs.earthquake.nshmp.netcdf.data.NetcdfShape;
-import gov.usgs.earthquake.nshmp.netcdf.data.NetcdfShape.IndexKey;
-import gov.usgs.earthquake.nshmp.netcdf.data.StaticData;
-
-import ucar.ma2.Array;
-
-/**
- * Abstract class to read in NetCDF file and create the bounding locations and
- * associated data.
- *
- * @author U.S. Geological Survey
- */
-public abstract class BoundingReader<T> {
-
- private final NetcdfData netcdfData;
- private BoundingData<T> boundingData;
- private List<BoundingLocation> boundingLocations = new ArrayList<>();
-
- BoundingReader(Netcdf<T> netcdf, Location site) {
- this.netcdfData = netcdf.netcdfData();
- boundingLocations = setBoundingLocations(netcdf, site);
- boundingData = setBoundingData(netcdf, site, boundingLocations);
- }
-
- /**
- * Returns the bounding data associated with a location
- */
- public BoundingData<T> boundingData() {
- return boundingData;
- }
-
- /**
- * Returns the bounding locations
- */
- LocationList boundingLocations() {
- var locations = boundingLocations.stream()
- .map(boundingLocation -> boundingLocation.location)
- .collect(Collectors.toList());
-
- return LocationList.copyOf(locations);
- }
-
- abstract StaticData<T> calculateTargetData(
- List<BoundingLocation> boundingLocations,
- BoundingData<T> boundingData,
- double fracLon,
- double fracLat);
-
- abstract BoundingData<T> extractDataAt(
- Netcdf<T> netcdf,
- List<BoundingLocation> boundingLocations,
- int idxLonLL,
- int idxLatLL);
-
- /**
- * Get data for target point
- *
- * @param d1 data at first point (p1)
- * @param d2 data at second point (p2)
- * @param frac fractional distance between p1 and p2 to target point
- */
- abstract StaticData<T> getTargetData(StaticData<T> d1, StaticData<T> d2, double frac);
-
- /*
- * Read hazard curves from netCDF variable into map of hazards by SiteClass
- * and Imt
- *
- * TODO: if target is on a grid point (or on a grid lat or lon), no need to
- * read 4 bounding points ?
- */
- abstract StaticData<T> mapDataFromArray(
- Netcdf<T> netcdf,
- Array array);
-
- /**
- * Set the bounding data
- */
- abstract BoundingData<T> setBoundingData(
- Netcdf<T> netcdf,
- Location site,
- List<BoundingLocation> boundingLocations);
-
- static class BoundingLocation {
- final Location location;
- final int[] origin;
-
- BoundingLocation(
- NetcdfShape netcdfShape,
- Location location,
- int longitudeIndex,
- int latitudeIndex) {
- this.location = location;
- origin = netcdfShape.buildShape()
- .add(IndexKey.LATITUDE, latitudeIndex)
- .add(IndexKey.LONGITUDE, longitudeIndex)
- .build();
- }
- }
-
- private List<BoundingLocation> setBoundingLocations(Netcdf<T> netcdf, Location site) {
- var boundingLocations = new ArrayList<BoundingLocation>();
- var longitudes = netcdfData.longitudes();
- var latitudes = netcdfData.latitudes();
-
- var idxLonLL = NetcdfUtils.getIdxLTEQ(longitudes, site.longitude);
- var idxLatLL = NetcdfUtils.getIdxLTEQ(latitudes, site.latitude);
-
- var lonLeft = longitudes[idxLonLL];
- var lonRight = longitudes[idxLonLL + 1];
- var latLower = latitudes[idxLatLL];
- var latUpper = latitudes[idxLatLL + 1];
-
- boundingLocations.add(
- new BoundingLocation(netcdf.netcdfShape(), Location.create(lonLeft, latLower), 0, 0));
- boundingLocations.add(
- new BoundingLocation(netcdf.netcdfShape(), Location.create(lonLeft, latUpper), 0, 1));
- boundingLocations.add(
- new BoundingLocation(netcdf.netcdfShape(), Location.create(lonRight, latUpper), 1, 1));
- boundingLocations.add(
- new BoundingLocation(netcdf.netcdfShape(), Location.create(lonRight, latLower), 1, 0));
-
- return boundingLocations;
- }
-}
diff --git a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/reader/BoundingReaderGroundMotions.java b/src/main/java/gov/usgs/earthquake/nshmp/netcdf/reader/BoundingReaderGroundMotions.java
deleted file mode 100644
index 1923bfd08d08719360b9832e3a879fbdb5bc35fa..0000000000000000000000000000000000000000
--- a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/reader/BoundingReaderGroundMotions.java
+++ /dev/null
@@ -1,194 +0,0 @@
-package gov.usgs.earthquake.nshmp.netcdf.reader;
-
-import java.io.IOException;
-import java.util.List;
-
-import gov.usgs.earthquake.nshmp.data.XySequence;
-import gov.usgs.earthquake.nshmp.geo.Location;
-import gov.usgs.earthquake.nshmp.gmm.Imt;
-import gov.usgs.earthquake.nshmp.netcdf.Netcdf;
-import gov.usgs.earthquake.nshmp.netcdf.NetcdfGroundMotions;
-import gov.usgs.earthquake.nshmp.netcdf.data.BoundingData;
-import gov.usgs.earthquake.nshmp.netcdf.data.NetcdfShape.IndexKey;
-import gov.usgs.earthquake.nshmp.netcdf.data.StaticData;
-import gov.usgs.earthquake.nshmp.netcdf.reader.NetcdfUtils.Key;
-
-import ucar.ma2.Array;
-import ucar.ma2.DataType;
-import ucar.ma2.InvalidRangeException;
-import ucar.nc2.dataset.NetcdfDatasets;
-
-/**
- * Creates the bounding locations and data associated with a specific site for
- * ground motions.
- *
- * @author U.S. Geological Survey
- */
-public class BoundingReaderGroundMotions extends BoundingReader<XySequence> {
-
- public static final double PGA_VALUE = 0.001;
- public static final double PGV_VALUE = 0.0001;
-
- public BoundingReaderGroundMotions(NetcdfGroundMotions netcdf, Location site) {
- super(netcdf, site);
- }
-
- @Override
- StaticData<XySequence> calculateTargetData(
- List<BoundingLocation> boundingLocations,
- BoundingData<XySequence> boundingData,
- double fracLon,
- double fracLat) {
- var westTarget = getTargetData(
- boundingData.get(boundingLocations.get(0).location),
- boundingData.get(boundingLocations.get(1).location),
- fracLat);
-
- var eastTarget = getTargetData(
- boundingData.get(boundingLocations.get(3).location),
- boundingData.get(boundingLocations.get(2).location),
- fracLat);
-
- return getTargetData(westTarget, eastTarget, fracLon);
- }
-
- @Override
- BoundingData<XySequence> extractDataAt(
- Netcdf<XySequence> netcdf,
- List<BoundingLocation> boundingLocations,
- int idxLonLL,
- int idxLatLL) {
- try (var ncd = NetcdfDatasets.openDataset(netcdf.netcdfPath().toString())) {
- var netcdfData = netcdf.netcdfData();
- var boundingData = BoundingData.<XySequence> builder();
- var targetGroup = ncd.getRootGroup();
- var netcdfShape = netcdf.netcdfShape();
-
- // Build origin array, e.g. [lon, lat, 0, 0]
- var targetOrigin = netcdfShape.buildShape()
- .add(IndexKey.LATITUDE, idxLatLL)
- .add(IndexKey.LONGITUDE, idxLonLL)
- .build();
-
- // Build target shape array, e.g. [2, 2, nImt, nSiteClass]
- var targetShape = netcdfShape.buildShape()
- .add(IndexKey.SITE_CLASS, netcdfData.siteClasses().size())
- .add(IndexKey.LATITUDE, 2)
- .add(IndexKey.LONGITUDE, 2)
- .add(IndexKey.IMT, netcdfData.imts().size())
- .build();
-
- var groundMotionArray = targetGroup
- .findVariableLocal(Key.GROUND_MOTION)
- .read(targetOrigin, targetShape);
-
- // Main data shape, e.g. [1, 1, nImt, nSiteClass]
- var shape = netcdfShape.buildShape()
- .add(IndexKey.SITE_CLASS, netcdfData.siteClasses().size())
- .add(IndexKey.LATITUDE, 1)
- .add(IndexKey.LONGITUDE, 1)
- .add(IndexKey.IMT, netcdfData.imts().size())
- .build();
-
- for (var boundingLocation : boundingLocations) {
- boundingData.put(
- boundingLocation.location,
- mapDataFromArray(netcdf, groundMotionArray.section(boundingLocation.origin, shape)));
- }
-
- return boundingData.build();
- } catch (IOException | InvalidRangeException e) {
- throw new RuntimeException(
- "Could not read Netcdf file [" + netcdf.netcdfPath() + "]. " + e.getMessage());
- }
- }
-
- @Override
- StaticData<XySequence> getTargetData(
- StaticData<XySequence> d1,
- StaticData<XySequence> d2,
- double frac) {
- NetcdfUtils.checkBoundingGroundMotion(d1, d2);
- return frac == 0.0 ? d1
- : frac == 1.0 ? d2 : NetcdfUtils.linearInterpolateGroundMotions(d1, d2, frac);
- }
-
- @Override
- StaticData<XySequence> mapDataFromArray(
- Netcdf<XySequence> netcdf,
- Array array) {
- var netcdfData = netcdf.netcdfData();
- var staticData = StaticData.<XySequence> builder();
-
- for (int iSiteClass = 0; iSiteClass < netcdfData.siteClasses().size(); iSiteClass++) {
- var siteClass = netcdfData.siteClasses().get(iSiteClass);
-
- var imts = netcdfData.imts();
- var periods = imts.stream()
- .mapToDouble(imt -> {
- if (imt == Imt.PGA) {
- return PGA_VALUE;
- } else if (imt == Imt.PGV) {
- return PGV_VALUE;
- }
- return imt.period();
- })
- .toArray();
-
- // Build origin array, e.g [0, siteClass]
- var origin = netcdf.netcdfShape().buildShape()
- .add(IndexKey.IMT, 0)
- .add(IndexKey.SITE_CLASS, iSiteClass)
- .reduce()
- .build();
-
- // Build shape array, e.g. [nImts, 1]
- var shape = netcdf.netcdfShape().buildShape()
- .add(IndexKey.IMT, imts.size())
- .add(IndexKey.SITE_CLASS, 1)
- .reduce()
- .build();
-
- try {
- var xySequence = XySequence.create(
- periods,
- (double[]) array.section(origin, shape).reduce().get1DJavaArray(DataType.DOUBLE));
-
- staticData.put(siteClass, xySequence);
- } catch (InvalidRangeException e) {
- throw new RuntimeException(e.getMessage());
- }
- }
-
- return staticData.build();
- }
-
- @Override
- BoundingData<XySequence> setBoundingData(
- Netcdf<XySequence> netcdf,
- Location site,
- List<BoundingLocation> boundingLocations) {
- var netcdfGroundMotions = (NetcdfGroundMotions) netcdf;
- var netcdfData = netcdfGroundMotions.netcdfData();
- var longitudes = netcdfData.longitudes();
- var latitudes = netcdfData.latitudes();
- var idxLonLL = NetcdfUtils.getIdxLTEQ(longitudes, site.longitude);
- var idxLatLL = NetcdfUtils.getIdxLTEQ(latitudes, site.latitude);
-
- var groundMotions =
- extractDataAt(netcdfGroundMotions, boundingLocations, idxLonLL, idxLatLL);
- var fracLon = NetcdfUtils.calcGridFrac(longitudes, idxLonLL, site.longitude);
- var fracLat = NetcdfUtils.calcGridFrac(latitudes, idxLatLL, site.latitude);
-
- var builder = BoundingData.<XySequence> builder();
- groundMotions.forEach((key, value) -> builder.put(key, value));
- builder.put(
- site,
- calculateTargetData(boundingLocations, groundMotions, fracLon, fracLat))
- .build();
- var boundingData = builder.build();
-
- NetcdfUtils.checkBoundingGroundMotions(boundingData, boundingLocations.get(0).location);
- return boundingData;
- }
-}
diff --git a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/reader/BoundingReaderHazardCurves.java b/src/main/java/gov/usgs/earthquake/nshmp/netcdf/reader/BoundingReaderHazardCurves.java
deleted file mode 100644
index 596769d81ff0b96e95879f454ab6b1491cc35e2f..0000000000000000000000000000000000000000
--- a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/reader/BoundingReaderHazardCurves.java
+++ /dev/null
@@ -1,186 +0,0 @@
-package gov.usgs.earthquake.nshmp.netcdf.reader;
-
-import java.io.IOException;
-import java.util.List;
-
-import gov.usgs.earthquake.nshmp.data.XySequence;
-import gov.usgs.earthquake.nshmp.geo.Location;
-import gov.usgs.earthquake.nshmp.netcdf.Netcdf;
-import gov.usgs.earthquake.nshmp.netcdf.NetcdfHazardCurves;
-import gov.usgs.earthquake.nshmp.netcdf.data.BoundingData;
-import gov.usgs.earthquake.nshmp.netcdf.data.NetcdfShape.IndexKey;
-import gov.usgs.earthquake.nshmp.netcdf.data.StaticData;
-import gov.usgs.earthquake.nshmp.netcdf.data.StaticDataHazardCurves;
-import gov.usgs.earthquake.nshmp.netcdf.reader.NetcdfUtils.Key;
-
-import ucar.ma2.Array;
-import ucar.ma2.DataType;
-import ucar.ma2.InvalidRangeException;
-import ucar.nc2.dataset.NetcdfDatasets;
-
-/**
- * Creates the bounding locations and data associated with a specific site for
- * hazard curves.
- *
- * @author U.S. Geological Survey
- */
-public class BoundingReaderHazardCurves extends BoundingReader<StaticDataHazardCurves> {
-
- public BoundingReaderHazardCurves(NetcdfHazardCurves netcdf, Location site) {
- super(netcdf, site);
- }
-
- @Override
- StaticData<StaticDataHazardCurves> calculateTargetData(
- List<BoundingLocation> boundingLocations,
- BoundingData<StaticDataHazardCurves> hazards,
- double fracLon,
- double fracLat) {
- var westTarget = getTargetData(
- hazards.get(boundingLocations.get(0).location),
- hazards.get(boundingLocations.get(1).location),
- fracLat);
-
- var eastTarget = getTargetData(
- hazards.get(boundingLocations.get(3).location),
- hazards.get(boundingLocations.get(2).location),
- fracLat);
-
- return getTargetData(westTarget, eastTarget, fracLon);
- }
-
- @Override
- BoundingData<StaticDataHazardCurves> extractDataAt(
- Netcdf<StaticDataHazardCurves> netcdf,
- List<BoundingLocation> boundingLocations,
- int idxLonLL,
- int idxLatLL) {
- try (var ncd = NetcdfDatasets.openDataset(netcdf.netcdfPath().toString())) {
- var netcdfData = ((NetcdfHazardCurves) netcdf).netcdfData();
- var boundingData = BoundingData.<StaticDataHazardCurves> builder();
- var targetGroup = ncd.getRootGroup();
- var netcdfShape = netcdf.netcdfShape();
-
- // Build origin array, e.g. [lon, lat, 0, 0, 0]
- var targetOrigin = netcdfShape.buildShape()
- .add(IndexKey.LATITUDE, idxLatLL)
- .add(IndexKey.LONGITUDE, idxLonLL)
- .build();
-
- // Build target shape array, e.g. [2, 2, nIML, nIMT, nSiteClass]
- var targetShape = netcdfShape.buildShape()
- .add(IndexKey.LONGITUDE, 2)
- .add(IndexKey.LATITUDE, 2)
- .add(IndexKey.IML, netcdfData.nIml())
- .add(IndexKey.IMT, netcdfData.imts().size())
- .add(IndexKey.SITE_CLASS, netcdfData.siteClasses().size())
- .build();
-
- var aHazards = targetGroup.findVariableLocal(Key.HAZARD).read(targetOrigin, targetShape);
-
- // Build final shape array, e.g. [1, 1, nIML, nIMT, nSiteClass]
- var shape = netcdfShape.buildShape()
- .add(IndexKey.LONGITUDE, 1)
- .add(IndexKey.LATITUDE, 1)
- .add(IndexKey.IML, netcdfData.nIml())
- .add(IndexKey.IMT, netcdfData.imts().size())
- .add(IndexKey.SITE_CLASS, netcdfData.siteClasses().size())
- .build();
-
- for (var boundingLocation : boundingLocations) {
- boundingData.put(
- boundingLocation.location,
- mapDataFromArray(netcdf, aHazards.section(boundingLocation.origin, shape)));
- }
-
- return boundingData.build();
- } catch (IOException | InvalidRangeException e) {
- throw new RuntimeException("Could not read Netcdf file [" + netcdf.netcdfPath() + "]");
- }
- }
-
- @Override
- StaticData<StaticDataHazardCurves> getTargetData(
- StaticData<StaticDataHazardCurves> d1,
- StaticData<StaticDataHazardCurves> d2,
- double frac) {
- NetcdfUtils.checkBoundingHazard(d1, d2);
- return frac == 0.0 ? d1
- : frac == 1.0 ? d2 : NetcdfUtils.linearInterpolateHazardCurves(d1, d2, frac);
- }
-
- @Override
- StaticData<StaticDataHazardCurves> mapDataFromArray(
- Netcdf<StaticDataHazardCurves> netcdf,
- Array hazards) {
- var netcdfData = ((NetcdfHazardCurves) netcdf).netcdfData();
- var vsImtHazardMap = StaticData.<StaticDataHazardCurves> builder();
-
- for (int iSiteClass = 0; iSiteClass < netcdfData.siteClasses().size(); iSiteClass++) {
- var siteClass = netcdfData.siteClasses().get(iSiteClass);
- var imtHazardMap = StaticDataHazardCurves.builder();
-
- for (int iImt = 0; iImt < netcdfData.imts().size(); iImt++) {
- var imt = netcdfData.imts().get(iImt);
-
- // Build origin array, e.g [0, imt, siteClass]
- var origin = netcdf.netcdfShape().buildShape()
- .add(IndexKey.IML, 0)
- .add(IndexKey.IMT, iImt)
- .add(IndexKey.SITE_CLASS, iSiteClass)
- .reduce()
- .build();
-
- // Build shape array, e.g. [nIML, 1, 1]
- var shape = netcdf.netcdfShape().buildShape()
- .add(IndexKey.IML, netcdfData.nIml())
- .add(IndexKey.IMT, 1)
- .add(IndexKey.SITE_CLASS, 1)
- .reduce()
- .build();
-
- try {
- var xySequence = XySequence.create(
- netcdfData.imls().get(imt),
- (double[]) hazards.section(origin, shape).reduce().get1DJavaArray(DataType.DOUBLE));
-
- imtHazardMap.put(imt, xySequence);
- } catch (InvalidRangeException e) {
- throw new RuntimeException(e.getMessage());
- }
- }
-
- vsImtHazardMap.put(siteClass, imtHazardMap.build());
- }
-
- return vsImtHazardMap.build();
- }
-
- @Override
- BoundingData<StaticDataHazardCurves> setBoundingData(
- Netcdf<StaticDataHazardCurves> netcdf,
- Location site,
- List<BoundingLocation> boundingLocations) {
- var netcdfHazard = (NetcdfHazardCurves) netcdf;
- var netcdfData = netcdfHazard.netcdfData();
- var longitudes = netcdfData.longitudes();
- var latitudes = netcdfData.latitudes();
- var idxLonLL = NetcdfUtils.getIdxLTEQ(longitudes, site.longitude);
- var idxLatLL = NetcdfUtils.getIdxLTEQ(latitudes, site.latitude);
-
- var hazards = extractDataAt(netcdfHazard, boundingLocations, idxLonLL, idxLatLL);
- var fracLon = NetcdfUtils.calcGridFrac(longitudes, idxLonLL, site.longitude);
- var fracLat = NetcdfUtils.calcGridFrac(latitudes, idxLatLL, site.latitude);
-
- var builder = BoundingData.<StaticDataHazardCurves> builder();
- hazards.forEach((key, value) -> builder.put(key, value));
- builder.put(
- site,
- calculateTargetData(boundingLocations, hazards, fracLon, fracLat))
- .build();
- var boundingData = builder.build();
-
- NetcdfUtils.checkBoundingHazards(boundingData, boundingLocations.get(0).location);
- return boundingData;
- }
-}
diff --git a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/reader/NetcdfUtils.java b/src/main/java/gov/usgs/earthquake/nshmp/netcdf/reader/NetcdfUtils.java
deleted file mode 100644
index abedf45dfe5658fc40f45029b96c3b23bddf2bd7..0000000000000000000000000000000000000000
--- a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/reader/NetcdfUtils.java
+++ /dev/null
@@ -1,340 +0,0 @@
-package gov.usgs.earthquake.nshmp.netcdf.reader;
-
-import static com.google.common.base.Preconditions.checkArgument;
-import static com.google.common.base.Preconditions.checkNotNull;
-import static com.google.common.base.Preconditions.checkState;
-
-import java.io.IOException;
-import java.util.Arrays;
-
-import com.google.common.math.DoubleMath;
-
-import gov.usgs.earthquake.nshmp.data.XySequence;
-import gov.usgs.earthquake.nshmp.geo.Location;
-import gov.usgs.earthquake.nshmp.geo.LocationList;
-import gov.usgs.earthquake.nshmp.netcdf.data.BoundingData;
-import gov.usgs.earthquake.nshmp.netcdf.data.StaticData;
-import gov.usgs.earthquake.nshmp.netcdf.data.StaticDataHazardCurves;
-
-import ucar.ma2.DataType;
-import ucar.nc2.Group;
-
-public class NetcdfUtils {
-
- // Tolerance for longitude/latitude comparisons
- static final double LOCATION_TOLERANCE = 0.000001;
-
- /**
- * Creates a border going clockwise of the given longitudes and latitudes.
- *
- * @param longitudes The longitudes
- * @param latitudes The latitudes
- * @return
- */
- public static LocationList buildBorder(double[] longitudes, double[] latitudes) {
- var builder = LocationList.builder();
-
- for (var lat : latitudes) {
- builder.add(longitudes[0], lat);
- }
-
- // omit duplicate points at corners
- for (var i = 1; i < longitudes.length; i++) {
- builder.add(longitudes[i], latitudes[latitudes.length - 1]);
- }
-
- for (var i = latitudes.length - 2; i >= 0; i--) {
- builder.add(longitudes[longitudes.length - 1], latitudes[i]);
- }
-
- for (var i = longitudes.length - 2; i >= 0; i--) {
- builder.add(longitudes[i], latitudes[0]);
- }
-
- return builder.build();
- }
-
- /*
- * Calculate fractional distance from a1 to t, between a1 and a2
- */
- static double calcFrac(double a1, double a2, double t) {
- if (Math.abs(t - a1) < LOCATION_TOLERANCE) {
- // target value == a1
- return 0.0;
- } else if (Math.abs(t - a2) < LOCATION_TOLERANCE) {
- // target value == a2
- return 1.0;
- } else {
- // calculate fractional distance to t between a[i] and a[i+1]
- return (t - a1) / (a2 - a1);
- }
- }
-
- /*
- * Calculate fractional distance from a[i] to t, between a[i] and a[i+1]
- */
- static double calcGridFrac(double[] a, int i, double t) {
- return calcFrac(a[i], a[i + 1], t);
- }
-
- /**
- * Check whether bounding ground motions contain the same: Site classes, IMTs
- * per each site class, and ground motions.
- *
- * @param a static data A
- * @param b static B
- */
- static void checkBoundingGroundMotion(
- StaticData<XySequence> a,
- StaticData<XySequence> b) {
- checkState(a.size() == b.size(), "Maps are not the same size");
- checkState(a.keySet().containsAll(b.keySet()), "Site classes do not match");
- a.keySet().forEach(key -> checkXySequence(a.get(key), b.get(key)));
- }
-
- /**
- * Checks bounding hazard maps contain the same: Site classes, IMTs per each
- * site class, and ground motions per each IMT
- *
- * @param boundingData The bounding ground motions
- */
- static void checkBoundingGroundMotions(
- BoundingData<XySequence> boundingData,
- Location location) {
- checkArgument(boundingData.containsKey(location), "Location not in bounding hazards");
- boundingData.keySet().stream()
- .filter(loc -> loc.equals(location))
- .forEach(key -> {
- checkBoundingGroundMotion(boundingData.get(location), boundingData.get(key));
- });
- }
-
- /**
- * Check whether bounding hazards contain the same: Site classes, IMTs per
- * each site class, and ground motions per each IMT
- *
- * @param a Bounding hazard map A
- * @param b Bounding hazard map B
- */
- static void checkBoundingHazard(
- StaticData<StaticDataHazardCurves> a,
- StaticData<StaticDataHazardCurves> b) {
- checkState(a.size() == b.size(), "Maps are not the same size");
- checkState(a.keySet().containsAll(b.keySet()), "Site classes do not match");
- a.keySet().forEach(key -> checkHazards(a.get(key), b.get(key)));
- }
-
- /**
- * Checks bounding hazard maps contain the same: Site classes, IMTs per each
- * site class, and ground motions per each IMT
- *
- * @param boundingData The bounding hazards
- */
- static void checkBoundingHazards(
- BoundingData<StaticDataHazardCurves> boundingData,
- Location location) {
- checkArgument(boundingData.containsKey(location), "Location not in bounding hazards");
- boundingData.keySet().stream()
- .filter(loc -> loc.equals(location))
- .forEach(key -> {
- checkBoundingHazard(boundingData.get(location), boundingData.get(key));
- });
- }
-
- /**
- * Check whether hazards contain the same: IMTs and ground motions per each
- * IMT
- *
- * @param a Hazard A
- * @param b Hazard B
- */
- static void checkHazards(
- StaticDataHazardCurves a,
- StaticDataHazardCurves b) {
- checkState(a.size() == b.size(), "Maps are not the same size");
- checkState(a.keySet().containsAll(b.keySet()), "IMTs do not match");
- a.keySet().forEach(key -> checkXySequence(a.get(key), b.get(key)));
- }
-
- /**
- * Check that the X values are identical.
- *
- * @param a Sequence A
- * @param b Sequence B
- */
- static void checkXySequence(XySequence a, XySequence b) {
- checkState(
- Arrays.equals(a.xValues().toArray(), b.xValues().toArray()),
- "Hazard curves xValues are not the same");
- }
-
- /**
- * Get a 1D array from a netCDF group.
- *
- * @param group The netCDF group
- * @param key The key to read from the group
- * @param dataType The data type to read
- * @throws IOException
- */
- static Object get1DArray(Group group, String key, DataType dataType) throws IOException {
- var var = group.findVariableLocal(key);
- checkNotNull(
- var,
- String.format("Could not find variable [%s] in group [%s]", key, group.getFullName()));
-
- return var.read().get1DJavaArray(dataType);
- }
-
- /**
- * Returns a {@code double[]} from a netCDF group
- *
- * @param group The netCDF group
- * @param key The key to read from the group
- * @throws IOException
- */
- static double[] getDoubleArray(Group group, String key) throws IOException {
- return (double[]) get1DArray(group, key, DataType.DOUBLE);
- }
-
- /*
- * find index of first element in a (sorted ascending) that is less than or
- * equal to target value t. If target value is equal to the maximum value in a
- * (the last element), an index of a.length - 1 is returned.
- */
- static int getIdxLTEQ(double[] a, double t) {
- // assumes array is in sorted order (a[i] < a[i+1])
- // make sure target is within the range of the array
- var n = a.length;
-
- if (t < a[0] || t > a[n - 1]) {
- // should never get here thanks to NshmpNetcdfCoordinates.checkCoords()
- throw new IllegalArgumentException(
- String.format("Target [%.4f] outside of valid range: %.4f <= t <= %.4f", t, a[0],
- a[n - 1]));
- }
-
- // if (t == a[0]) {
- if (DoubleMath.fuzzyEquals(a[0], t, LOCATION_TOLERANCE)) {
- return 0;
- }
- // if (t == a[n - 1]) {
- if (DoubleMath.fuzzyEquals(a[n - 1], t, LOCATION_TOLERANCE)) {
- return n - 2; // return second to last index number
- }
-
- var idx = Arrays.binarySearch(a, t);
- if (idx < 0) {
- // "exact" match not found, so use index of first value less than target
- // this is insertion_point - 1
- // returned idx = -insertion_point - 1
- idx = -1 * (idx + 1) - 1;
- // array[idx] <= target
- }
-
- return idx;
- }
-
- /**
- * Returns a {@code int[]} from a netCDF group
- *
- * @param group The netCDF group
- * @param key The key to read from the group
- * @throws IOException
- */
- static int[] getIntArray(Group group, String key) throws IOException {
- return (int[]) get1DArray(group, key, DataType.INT);
- }
-
- /**
- * Returns a {@code String[]} from a netCDF group
- *
- * @param group The netCDF group
- * @param key The key to read from the group
- * @throws IOException
- */
- static String[] getStringArray(Group group, String key) throws IOException {
- return (String[]) get1DArray(group, key, DataType.STRING);
- }
-
- /*
- * Linear interpolation of data values to a target point
- */
- static StaticData<StaticDataHazardCurves> linearInterpolateHazardCurves(
- StaticData<StaticDataHazardCurves> v1,
- StaticData<StaticDataHazardCurves> v2,
- double frac) {
- checkBoundingHazard(v1, v2);
-
- var targetMap = StaticData.<StaticDataHazardCurves> builder();
-
- v1.keySet().forEach(siteClass -> {
- var imtHazards = StaticDataHazardCurves.builder();
- var v1StaticHazards = v1.get(siteClass);
- var v2StaticHazards = v2.get(siteClass);
-
- v1StaticHazards.keySet().forEach(imt -> {
- var v1Haz = v1StaticHazards.get(imt).yValues().toArray();
- var v2Haz = v2StaticHazards.get(imt).yValues().toArray();
- var target = new double[v1Haz.length];
-
- for (int i = 0; i < v1Haz.length; i++) {
- target[i] = v1Haz[i] * (1 - frac) + v2Haz[i] * frac;
- }
-
- var xValues = v1StaticHazards.get(imt).xValues().toArray();
- imtHazards.put(imt, XySequence.create(xValues, target));
- });
-
- targetMap.put(siteClass, imtHazards.build());
- });
-
- return targetMap.build();
- }
-
- /*
- * Linear interpolation of data values to a target point
- */
- static StaticData<XySequence> linearInterpolateGroundMotions(
- StaticData<XySequence> v1,
- StaticData<XySequence> v2,
- double frac) {
- checkBoundingGroundMotion(v1, v2);
-
- var targetMap = StaticData.<XySequence> builder();
-
- v1.keySet().forEach(siteClass -> {
- var v1Data = v1.get(siteClass).yValues().toArray();
- var v2Data = v2.get(siteClass).yValues().toArray();
- var target = new double[v1Data.length];
-
- for (int i = 0; i < v1Data.length; i++) {
- target[i] = v1Data[i] * (1 - frac) + v2Data[i] * frac;
- }
-
- var xValues = v1.get(siteClass).xValues().toArray();
- targetMap.put(siteClass, XySequence.create(xValues, target));
- });
-
- return targetMap.build();
- }
-
- public static class Key {
- public static final String DESCRIPTION = "description";
- public static final String GRID_STEP = "gridStep";
- public static final String ID = "id";
- public static final String LABEL = "label";
- public static final String DATA_TYPE = "dataType";
- public static final String GROUND_MOTION = "groundMotion";
- public static final String HAZARD = "hazard";
- public static final String HISTORY = "history";
- public static final String IMLS = "iml";
- public static final String IMT = "imt";
- public static final String LAT = "lat";
- public static final String LON = "lon";
- public static final String REGION = "region";
- public static final String SCIENCE_BASE_INFO = "scienceBaseInfo";
- public static final String SITE_CLASS = "siteClass";
- public static final String VS30 = "vs30";
- public static final String YEAR = "year";
- }
-}
diff --git a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/reader/Reader.java b/src/main/java/gov/usgs/earthquake/nshmp/netcdf/reader/Reader.java
deleted file mode 100644
index 80f176fe02cb3a9ee6398e51e4b32a64cd4b645a..0000000000000000000000000000000000000000
--- a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/reader/Reader.java
+++ /dev/null
@@ -1,106 +0,0 @@
-package gov.usgs.earthquake.nshmp.netcdf.reader;
-
-import java.io.IOException;
-import java.util.Arrays;
-import java.util.List;
-import java.util.Map;
-import java.util.stream.Collectors;
-
-import com.google.common.reflect.TypeToken;
-import com.google.gson.Gson;
-
-import gov.usgs.earthquake.nshmp.Maths;
-import gov.usgs.earthquake.nshmp.gmm.Imt;
-import gov.usgs.earthquake.nshmp.gmm.NehrpSiteClass;
-import gov.usgs.earthquake.nshmp.netcdf.data.NetcdfData;
-import gov.usgs.earthquake.nshmp.netcdf.data.NetcdfShape;
-import gov.usgs.earthquake.nshmp.netcdf.data.ScienceBaseMetadata;
-import gov.usgs.earthquake.nshmp.netcdf.reader.NetcdfUtils.Key;
-
-import ucar.ma2.DataType;
-import ucar.nc2.Group;
-
-/**
- * Read in NetCDF file.
- *
- * @author U.S. Geological Survey
- */
-public abstract class Reader {
-
- Group targetGroup;
- NetcdfData netcdfData;
- private NetcdfShape netcdfShape;
-
- static final String FLAG_KEY = "flag_key";
- static final Gson GSON = new Gson();
-
- public Reader(Group targetGroup) throws IOException {
- this.targetGroup = targetGroup;
- netcdfData = readData(targetGroup);
- netcdfShape = buildNetcdfShape(targetGroup);
- }
-
- public NetcdfShape netcdfShape() {
- return netcdfShape;
- }
-
- public NetcdfData netcdfData() {
- return netcdfData;
- }
-
- abstract NetcdfShape buildNetcdfShape(Group group);
-
- NetcdfData readData(Group targetGroup) throws IOException {
- var vSiteClass = targetGroup.findVariableLocal(Key.SITE_CLASS);
- var vImts = targetGroup.findVariableLocal(Key.IMT);
- var vVs30 = targetGroup.findVariableLocal(Key.VS30);
- var stringStringMapType = new TypeToken<Map<String, String>>() {}.getType();
-
- // get list of IMT enums
- Map<String, String> imtFlagKeys = GSON
- .fromJson(vImts.findAttribute(FLAG_KEY)
- .getValues().toString(), stringStringMapType);
- var imts = Arrays.stream((int[]) vImts.read().get1DJavaArray(DataType.INT))
- .boxed()
- .map(imtInt -> imtFlagKeys.get(Integer.toString((imtInt))))
- .map(imt -> Imt.valueOf(imt))
- .collect(Collectors.toUnmodifiableList());
-
- // get list of SiteClass enums
- Map<String, String> siteClassFlagKeys = GSON
- .fromJson(vSiteClass.findAttribute(FLAG_KEY)
- .getValues().toString(), stringStringMapType);
- List<NehrpSiteClass> siteClasses =
- Arrays.stream((int[]) vSiteClass.read().get1DJavaArray(DataType.INT)).boxed()
- .map(siteClassInt -> siteClassFlagKeys.get(Integer.toString(siteClassInt)))
- .map(siteClass -> NehrpSiteClass.valueOf(siteClass))
- .collect(Collectors.toUnmodifiableList());
-
- // Get vs30 map
- Map<String, Double> vs30FlagKeys = GSON
- .fromJson(vVs30.findAttribute(FLAG_KEY).getValues().toString(),
- new TypeToken<Map<String, Double>>() {}.getType());
- Map<NehrpSiteClass, Double> vs30Map = vs30FlagKeys.entrySet().stream()
- .collect(Collectors.toUnmodifiableMap(entry -> NehrpSiteClass.valueOf(entry.getKey()),
- Map.Entry::getValue));
-
- var latitudes = Arrays.stream(NetcdfUtils.getDoubleArray(targetGroup, Key.LAT))
- // TODO: Dynamic set location precision from NetCDF
- .map(lat -> Maths.round(lat, 3))
- .toArray();
-
- var longitudes = Arrays.stream(NetcdfUtils.getDoubleArray(targetGroup, Key.LON))
- // TODO: Dynamic set location precision from NetCDF
- .map(lon -> Maths.round(lon, 3))
- .toArray();
-
- return NetcdfData.builder()
- .imts(imts)
- .latitudes(latitudes)
- .longitudes(longitudes)
- .scienceBaseMetadata(new ScienceBaseMetadata(targetGroup))
- .siteClasses(siteClasses)
- .vs30Map(vs30Map)
- .build();
- }
-}
diff --git a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/reader/ReaderGroundMotions.java b/src/main/java/gov/usgs/earthquake/nshmp/netcdf/reader/ReaderGroundMotions.java
deleted file mode 100644
index f45da139d717469be4fc52160892913a4d392736..0000000000000000000000000000000000000000
--- a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/reader/ReaderGroundMotions.java
+++ /dev/null
@@ -1,32 +0,0 @@
-package gov.usgs.earthquake.nshmp.netcdf.reader;
-
-import java.io.IOException;
-
-import gov.usgs.earthquake.nshmp.netcdf.data.NetcdfShape;
-import gov.usgs.earthquake.nshmp.netcdf.data.NetcdfShape.IndexKey;
-import gov.usgs.earthquake.nshmp.netcdf.reader.NetcdfUtils.Key;
-
-import ucar.nc2.Group;
-
-/**
- * Read in ground motions NetCDF files
- *
- * @author U.S. Geological Survey
- */
-public class ReaderGroundMotions extends Reader {
-
- public ReaderGroundMotions(Group targetGroup) throws IOException {
- super(targetGroup);
- }
-
- @Override
- NetcdfShape buildNetcdfShape(Group group) {
- var vData = group.findVariableLocal(Key.GROUND_MOTION);
- return NetcdfShape.builder()
- .add(IndexKey.IMT, vData.findDimensionIndex(Key.IMT))
- .add(IndexKey.LATITUDE, vData.findDimensionIndex(Key.LAT))
- .add(IndexKey.LONGITUDE, vData.findDimensionIndex(Key.LON))
- .add(IndexKey.SITE_CLASS, vData.findDimensionIndex(Key.SITE_CLASS))
- .build();
- }
-}
diff --git a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/reader/ReaderHazardCurves.java b/src/main/java/gov/usgs/earthquake/nshmp/netcdf/reader/ReaderHazardCurves.java
deleted file mode 100644
index b90c086be3d7e1cbe9756a2c69b2d58885daea6c..0000000000000000000000000000000000000000
--- a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/reader/ReaderHazardCurves.java
+++ /dev/null
@@ -1,99 +0,0 @@
-package gov.usgs.earthquake.nshmp.netcdf.reader;
-
-import java.io.IOException;
-import java.util.Arrays;
-import java.util.Collections;
-import java.util.EnumMap;
-import java.util.List;
-import java.util.Map;
-
-import gov.usgs.earthquake.nshmp.gmm.Imt;
-import gov.usgs.earthquake.nshmp.netcdf.data.NetcdfDataHazardCurves;
-import gov.usgs.earthquake.nshmp.netcdf.data.NetcdfShape;
-import gov.usgs.earthquake.nshmp.netcdf.data.NetcdfShape.IndexKey;
-import gov.usgs.earthquake.nshmp.netcdf.reader.NetcdfUtils.Key;
-
-import ucar.ma2.DataType;
-import ucar.ma2.InvalidRangeException;
-import ucar.nc2.Group;
-import ucar.nc2.Variable;
-
-/**
- * Read in hazard curve NetCDF files.
- *
- * @author U.S. Geological Survey
- */
-public class ReaderHazardCurves extends Reader {
-
- public ReaderHazardCurves(Group targetGroup) throws IOException {
- super(targetGroup);
- }
-
- @Override
- public NetcdfDataHazardCurves netcdfData() {
- return (NetcdfDataHazardCurves) netcdfData;
- }
-
- @Override
- NetcdfDataHazardCurves readData(Group targetGroup) throws IOException {
- var coords = super.readData(targetGroup);
- var vImls = targetGroup.findVariableLocal(Key.IMLS);
-
- // get map of IMLs
- var imls = mapImls(vImls, coords.imts());
-
- return NetcdfDataHazardCurves.builder()
- .imls(imls)
- .imts(coords.imts())
- .latitudes(coords.latitudes())
- .longitudes(coords.longitudes())
- .scienceBaseMetadata(coords.scienceBaseMetadata())
- .siteClasses(coords.siteClasses())
- .vs30Map(coords.vs30Map())
- .build();
- }
-
- @Override
- NetcdfShape buildNetcdfShape(Group group) {
- var vData = group.findVariableLocal(Key.HAZARD);
- return NetcdfShape.builder()
- .add(IndexKey.IML, vData.findDimensionIndex(Key.IMLS))
- .add(IndexKey.IMT, vData.findDimensionIndex(Key.IMT))
- .add(IndexKey.LATITUDE, vData.findDimensionIndex(Key.LAT))
- .add(IndexKey.LONGITUDE, vData.findDimensionIndex(Key.LON))
- .add(IndexKey.SITE_CLASS, vData.findDimensionIndex(Key.SITE_CLASS))
- .build();
- }
-
- /*
- * convert 2D Iml variable (dimensions Imt, Iml) to map of Imls by Imt
- *
- * TODO: use MultiMap or SetMultiMap (etc.) to store unique IML sets? Could
- * then also initialize the underlying XySequence objects for reading in the
- * hazard curves...
- */
- private Map<Imt, double[]> mapImls(Variable vImls, List<Imt> imts) {
- var nIml = vImls.getShape(1);
- Map<Imt, double[]> imtImlMap = new EnumMap<Imt, double[]>(Imt.class);
-
- for (int j = 0; j < imts.size(); j++) {
- var imt = imts.get(j);
-
- // set origin and shape of double[] Imls to read
- var origin = new int[] { j, 0 };
- var shape = new int[] { 1, nIml };
-
- try {
- imtImlMap.put(
- imt,
- (double[]) vImls.read(origin, shape).reduce().get1DJavaArray(DataType.DOUBLE));
- } catch (IOException | InvalidRangeException e) {
- var msg = "Failed read attempt for vImls with origin: " +
- Arrays.toString(origin) + ", shape: " + Arrays.toString(shape);
- throw new RuntimeException(msg);
- }
- }
-
- return Collections.unmodifiableMap(imtImlMap);
- }
-}
diff --git a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/www/Application.java b/src/main/java/gov/usgs/earthquake/nshmp/netcdf/www/Application.java
deleted file mode 100644
index f17109b94566a6f0b44329ee9e9bd604e2ddbec7..0000000000000000000000000000000000000000
--- a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/www/Application.java
+++ /dev/null
@@ -1,21 +0,0 @@
-package gov.usgs.earthquake.nshmp.netcdf.www;
-
-import io.micronaut.runtime.Micronaut;
-import io.swagger.v3.oas.annotations.OpenAPIDefinition;
-import io.swagger.v3.oas.annotations.info.Info;
-
-@OpenAPIDefinition(
- info = @Info(
- title = "NSHMP Static Data Services",
- description = "### Get static curves\n" +
- "See the service usage for supported longitudes, " +
- "latitudes, and site classes"))
-public class Application {
-
- public static void main(String[] args) {
- Micronaut.build(args)
- .mainClass(Application.class)
- .start();
- }
-
-}
diff --git a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/www/NetcdfController.java b/src/main/java/gov/usgs/earthquake/nshmp/netcdf/www/NetcdfController.java
deleted file mode 100644
index 81ac818c3b102ab400864839c54d5a8454d4e19b..0000000000000000000000000000000000000000
--- a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/www/NetcdfController.java
+++ /dev/null
@@ -1,167 +0,0 @@
-package gov.usgs.earthquake.nshmp.netcdf.www;
-
-import java.nio.file.Path;
-
-import gov.usgs.earthquake.nshmp.gmm.NehrpSiteClass;
-import gov.usgs.earthquake.nshmp.netcdf.NetcdfDataType;
-import gov.usgs.earthquake.nshmp.netcdf.NetcdfGroundMotions;
-import gov.usgs.earthquake.nshmp.netcdf.NetcdfHazardCurves;
-import gov.usgs.earthquake.nshmp.www.NshmpMicronautServlet;
-
-import io.micronaut.context.annotation.Value;
-import io.micronaut.context.event.StartupEvent;
-import io.micronaut.core.annotation.Nullable;
-import io.micronaut.http.HttpRequest;
-import io.micronaut.http.HttpResponse;
-import io.micronaut.http.MediaType;
-import io.micronaut.http.annotation.Controller;
-import io.micronaut.http.annotation.Get;
-import io.micronaut.http.annotation.PathVariable;
-import io.micronaut.http.annotation.QueryValue;
-import io.micronaut.runtime.event.annotation.EventListener;
-import io.swagger.v3.oas.annotations.Operation;
-import io.swagger.v3.oas.annotations.media.Content;
-import io.swagger.v3.oas.annotations.media.Schema;
-import io.swagger.v3.oas.annotations.responses.ApiResponse;
-import io.swagger.v3.oas.annotations.tags.Tag;
-import jakarta.inject.Inject;
-
-/**
- * Micronaut controller for getting static hazards or ground motions from a
- * NetCDF file.
- *
- * @see NetcdfService
- *
- * @author U.S. Geological Survey
- */
-@Tag(name = "Static Data")
-@Controller("/curves")
-public class NetcdfController {
-
- @Inject
- private NshmpMicronautServlet servlet;
-
- @Value("${nshmp-ws-static.netcdf-file}")
- Path netcdfPath;
-
- NetcdfService service;
-
- /**
- * Read in data type and return the appropriate service to use.
- */
- @EventListener
- void startup(StartupEvent event) {
- var dataType = NetcdfDataType.getDataType(netcdfPath);
-
- switch (dataType) {
- case GROUND_MOTIONS:
- var netcdfGroundMotions = new NetcdfGroundMotions(netcdfPath);
- service = new NetcdfServiceGroundMotions(netcdfGroundMotions);
- break;
- case HAZARD_CURVES:
- var netcdfHazard = new NetcdfHazardCurves(netcdfPath);
- service = new NetcdfServiceHazardCurves(netcdfHazard);
- break;
- default:
- throw new RuntimeException("Data type [" + dataType + "] not supported");
- }
- }
-
- /**
- * GET method to return a static curve using URL query.
- *
- * @param request The HTTP request
- * @param longitude The longitude of the site
- * @param latitude Latitude of the site
- * @param siteClass The site class (optional)
- */
- @Operation(
- summary = "Returns curve(s) given a longitude, latitude, and/or a site class",
- description = "Retrieve static curve(s) from a NSHM NetCDF file.\n\n" +
- "For supported longitudes, latitudes, and site classes see the usage information.",
- operationId = "netcdf_data_doGetHazard")
- @ApiResponse(
- description = "Returns a static curve from the NetCDF file",
- responseCode = "200",
- content = @Content(
- schema = @Schema(type = "string")))
- @Get(uri = "{?longitude,latitude,siteClass}", produces = MediaType.APPLICATION_JSON)
- public HttpResponse<String> doGet(
- HttpRequest<?> request,
- @Schema(required = true) @QueryValue @Nullable Double longitude,
- @Schema(required = true) @QueryValue @Nullable Double latitude,
- @QueryValue @Nullable NehrpSiteClass siteClass) {
- var query = new Query(longitude, latitude, siteClass);
- return service.handleServiceCall(request, query);
- }
-
- /**
- * GET method to return static curves using slash delimited.
- *
- * @param request The HTTP request
- * @param longitude The longitude of the site
- * @param latitude Latitude of the site
- * @param siteClass The site class
- */
- @Operation(
- summary = "Returns static curves given a longitude, latitude, and site class.",
- description = "Retrieve static curves from a NetCDF file.\n\n" +
- "For supported longitudes, latitudes, and site classes see the usage information.",
- operationId = "netcdf_data_doGetHazardSlashWithSiteClass")
- @ApiResponse(
- description = "Returns static curves from the NetCDF file",
- responseCode = "200",
- content = @Content(
- schema = @Schema(type = "string")))
- @Get(uri = "/{longitude}/{latitude}/{siteClass}", produces = MediaType.APPLICATION_JSON)
- public HttpResponse<String> doGetSlashBySite(
- HttpRequest<?> request,
- @Schema(required = true) @PathVariable @Nullable Double longitude,
- @Schema(required = true) @PathVariable @Nullable Double latitude,
- @Schema(required = true) @PathVariable @Nullable NehrpSiteClass siteClass) {
- return doGet(request, longitude, latitude, siteClass);
- }
-
- /**
- * GET method to return hazard curves using slash delimited.
- *
- * @param request The HTTP request
- * @param longitude The longitude of the site
- * @param latitude Latitude of the site
- */
- @Operation(
- summary = "Returns static curves given a longitude and latitude.",
- description = "Retrieve static curves from a NetCDF file.\n\n" +
- "For supported longitudes and latitudes see the usage information.",
- operationId = "netcdf_data_doGetHazardSlash")
- @ApiResponse(
- description = "Returns static curves from the NSHM NetCDF file",
- responseCode = "200",
- content = @Content(
- schema = @Schema(type = "string")))
- @Get(uri = "/{longitude}/{latitude}", produces = MediaType.APPLICATION_JSON)
- public HttpResponse<String> doGetSlash(
- HttpRequest<?> request,
- @Schema(required = true) @PathVariable @Nullable Double longitude,
- @Schema(required = true) @PathVariable @Nullable Double latitude) {
- return doGet(request, longitude, latitude, null);
- }
-
- static class Query {
- final Double longitude;
- final Double latitude;
- final NehrpSiteClass siteClass;
-
- Query(Double longitude, Double latitude, NehrpSiteClass siteClass) {
- this.longitude = longitude;
- this.latitude = latitude;
- this.siteClass = siteClass;
- }
- }
-
- static enum Service {
- BOUNDING,
- CURVES,
- CURVES_BY_SITE_CLASS,
- }
-}
diff --git a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/www/NetcdfService.java b/src/main/java/gov/usgs/earthquake/nshmp/netcdf/www/NetcdfService.java
deleted file mode 100644
index 0453caa34d443a271a73fe8cc824611deaaa54e1..0000000000000000000000000000000000000000
--- a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/www/NetcdfService.java
+++ /dev/null
@@ -1,229 +0,0 @@
-package gov.usgs.earthquake.nshmp.netcdf.www;
-
-import static gov.usgs.earthquake.nshmp.netcdf.www.NetcdfWsUtils.GSON;
-
-import java.util.Map;
-import java.util.logging.Logger;
-
-import gov.usgs.earthquake.nshmp.Maths;
-import gov.usgs.earthquake.nshmp.data.XySequence;
-import gov.usgs.earthquake.nshmp.geo.Location;
-import gov.usgs.earthquake.nshmp.gmm.NehrpSiteClass;
-import gov.usgs.earthquake.nshmp.netcdf.Netcdf;
-import gov.usgs.earthquake.nshmp.netcdf.data.ScienceBaseMetadata;
-import gov.usgs.earthquake.nshmp.netcdf.www.NetcdfController.Query;
-import gov.usgs.earthquake.nshmp.netcdf.www.NetcdfController.Service;
-import gov.usgs.earthquake.nshmp.netcdf.www.meta.DoubleParameter;
-import gov.usgs.earthquake.nshmp.www.Response;
-
-import io.micronaut.http.HttpRequest;
-import io.micronaut.http.HttpResponse;
-
-/**
- * Abstract service handler for {@code NetcdfController}.
- *
- * @see NetcdfController
- *
- * @author U.S. Geological Survey
- */
-public abstract class NetcdfService {
-
- protected static final Logger LOGGER = Logger.getLogger(NetcdfService.class.getName());
-
- Netcdf<?> netcdf;
-
- protected NetcdfService(Netcdf<?> netcdf) {
- this.netcdf = netcdf;
- }
-
- /**
- * Returns the metadata response.
- *
- * @param httpRequest The HTTP request
- */
- abstract Response<String, Metadata> getMetadataResponse(HttpRequest<?> httpRequest);
-
- /**
- * Returns the service name
- */
- abstract String getServiceName();
-
- /**
- * Returns the netcdf object associated with the specific data type.
- */
- abstract Netcdf<?> netcdf();
-
- /**
- * Returns the static curves at a specific location.
- *
- * @param <T> The response type
- * @param request The request data
- * @param url The URL for the service call
- */
- abstract <T> Response<RequestData, T> processCurves(RequestData request, String url);
-
- /**
- * Returns the static curves at a specific location and site class.
- *
- * @param <T> The response type
- * @param request The request data
- * @param url The URL for the service call
- */
- abstract <T> Response<RequestDataSiteClass, T> processCurvesSiteClass(
- RequestDataSiteClass request,
- String url);
-
- /**
- * Process the service request and returns the reponse.
- *
- * @param httpRequest The HTTP request
- * @param query The HTTP query
- * @param service The NetCDF service
- */
- abstract Response<?, ?> processRequest(HttpRequest<?> httpRequest, Query query, Service service);
-
- /**
- * Handler of HTTP request, returns the service response.
- *
- * @param httpRequest The HTTP request
- * @param query The service query
- */
- HttpResponse<String> handleServiceCall(HttpRequest<?> httpRequest, Query query) {
- try {
- var url = httpRequest.getUri().toString();
- LOGGER.info("Request: " + url);
- LOGGER.fine("Query:\n" + GSON.toJson(query));
-
- if (query.longitude == null && query.latitude == null) {
- return metadata(httpRequest);
- }
- var service = getService(query);
- Response<?, ?> svcResponse = processRequest(httpRequest, query, service);
- var response = GSON.toJson(svcResponse);
- LOGGER.fine("Result:\n" + response);
- return HttpResponse.ok(response);
- } catch (Exception e) {
- var url = httpRequest.getUri().toString();
- return NetcdfWsUtils.handleError(e, getServiceName(), url);
- }
- }
-
- private Service getService(Query query) {
- if (query.siteClass != null) {
- return Service.CURVES_BY_SITE_CLASS;
- } else {
- return Service.CURVES;
- }
- }
-
- private HttpResponse<String> metadata(HttpRequest<?> httpRequest) {
- var svcResponse = getMetadataResponse(httpRequest);
- var response = GSON.toJson(svcResponse);
- LOGGER.fine("Result:\n" + response);
- return HttpResponse.ok(response);
- }
-
- class Metadata {
- final String description;
- final String[] syntax;
- final SourceModel model;
- final DoubleParameter longitude;
- final DoubleParameter latitude;
- final DoubleParameter vs30;
- final NetcdfMetadata netcdfMetadata;
-
- Metadata(HttpRequest<?> request, String description) {
- var url = request.getUri().toString();
- url = url.endsWith("/") ? url.substring(0, url.length() - 1) : url;
- this.description = description;
- syntax = new String[] {
- url + "/{longitude:number}/{latitude:number}",
- url + "?longitude={number}&latitude={number}",
- url + "/{longitude:number}/{latitude:number}/{siteClass:NehrpSiteClass}",
- url + "?longitude={number}&latitude={number}&siteClass={NehrpSiteClass}",
- };
-
- var bounds = netcdf().netcdfData().bounds();
- longitude = new DoubleParameter(
- "Longitude",
- "°",
- Maths.round(bounds.min.longitude, 3),
- Maths.round(bounds.max.longitude, 3));
- latitude = new DoubleParameter(
- "Latitude",
- "°",
- Maths.round(bounds.min.latitude, 3),
- Maths.round(bounds.max.latitude, 3));
- model = new SourceModel();
- vs30 = new DoubleParameter(
- "Vs30",
- "m/s",
- 150,
- 1500);
- netcdfMetadata = new NetcdfMetadata();
- }
- }
-
- class NetcdfMetadata {
- final String netcdfFile;
- final ScienceBaseMetadata scienceBaseMetadata;
-
- NetcdfMetadata() {
- var fileName = netcdf.netcdfPath().getFileName();
- netcdfFile = fileName == null ? netcdf().netcdfPath().toString() : fileName.toString();
- scienceBaseMetadata = netcdf().netcdfData().scienceBaseMetadata();
- }
- }
-
- class SourceModel {
- final String name;
- final Map<NehrpSiteClass, Double> siteClasses;
-
- SourceModel() {
- name = netcdf().netcdfData().scienceBaseMetadata().label;
- siteClasses = netcdf().netcdfData().vs30Map();
- }
- }
-
- static class ResponseMetadata extends RequestDataSiteClass {
- final String xLabel;
- final String yLabel;
-
- ResponseMetadata(
- String xLabel,
- String yLabel,
- Location site,
- NehrpSiteClass siteClass) {
- super(site, siteClass);
- this.xLabel = xLabel;
- this.yLabel = yLabel;
- }
- }
-
- static class ResponseData<T extends ResponseMetadata> {
- final T metadata;
- final XySequence data;
-
- ResponseData(T metadata, XySequence data) {
- this.metadata = metadata;
- this.data = data;
- }
- }
-
- static class RequestData {
- Location site;
-
- RequestData(Location site) {
- this.site = site;
- }
- }
-
- static class RequestDataSiteClass extends RequestData {
- NehrpSiteClass siteClass;
-
- RequestDataSiteClass(Location site, NehrpSiteClass siteClass) {
- super(site);
- this.siteClass = siteClass;
- }
- }
-}
diff --git a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/www/NetcdfServiceGroundMotions.java b/src/main/java/gov/usgs/earthquake/nshmp/netcdf/www/NetcdfServiceGroundMotions.java
deleted file mode 100644
index 4624d09c6d4c9aa816e29c6462d119c7d269f31f..0000000000000000000000000000000000000000
--- a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/www/NetcdfServiceGroundMotions.java
+++ /dev/null
@@ -1,136 +0,0 @@
-package gov.usgs.earthquake.nshmp.netcdf.www;
-
-import java.util.List;
-import java.util.Map;
-import java.util.stream.Collectors;
-
-import gov.usgs.earthquake.nshmp.data.XySequence;
-import gov.usgs.earthquake.nshmp.geo.Location;
-import gov.usgs.earthquake.nshmp.gmm.Imt;
-import gov.usgs.earthquake.nshmp.gmm.NehrpSiteClass;
-import gov.usgs.earthquake.nshmp.netcdf.NetcdfGroundMotions;
-import gov.usgs.earthquake.nshmp.netcdf.data.StaticData;
-import gov.usgs.earthquake.nshmp.netcdf.reader.BoundingReaderGroundMotions;
-import gov.usgs.earthquake.nshmp.netcdf.www.NetcdfController.Query;
-import gov.usgs.earthquake.nshmp.netcdf.www.NetcdfController.Service;
-import gov.usgs.earthquake.nshmp.netcdf.www.NetcdfWsUtils.Key;
-import gov.usgs.earthquake.nshmp.www.Response;
-import gov.usgs.earthquake.nshmp.www.WsUtils;
-import gov.usgs.earthquake.nshmp.www.meta.Status;
-
-import io.micronaut.http.HttpRequest;
-
-/**
- * Handles service calls for ground motions.
- *
- * @see NetcdfController
- *
- * @author U.S. Geological Survey
- */
-public class NetcdfServiceGroundMotions extends NetcdfService {
-
- static final String SERVICE_DESCRIPTION = "Get static ground motions from a NetCDF file";
- static final String SERVICE_NAME = "Static Ground Motions";
- static final String X_LABEL = "Period (s)";
- static final String Y_LABEL = "Median Ground Motion (g)";
-
- protected NetcdfServiceGroundMotions(NetcdfGroundMotions netcdf) {
- super(netcdf);
- }
-
- @Override
- Response<String, Metadata> getMetadataResponse(HttpRequest<?> request) {
- var metadata = new Metadata(request, SERVICE_DESCRIPTION);
- var url = request.getUri().toString();
- return new Response<>(Status.USAGE, SERVICE_NAME, url, metadata, url);
- }
-
- @Override
- String getServiceName() {
- return SERVICE_NAME;
- }
-
- @Override
- NetcdfGroundMotions netcdf() {
- return (NetcdfGroundMotions) netcdf;
- }
-
- @Override
- Response<?, ?> processRequest(HttpRequest<?> httpRequest, Query query, Service service) {
- var site = Location.create(query.longitude, query.latitude);
- var requestData = new RequestData(site);
- var url = httpRequest.getUri().toString();
-
- switch (service) {
- case CURVES:
- return processCurves(requestData, url);
- case CURVES_BY_SITE_CLASS:
- requestData = new RequestDataSiteClass(site, query.siteClass);
- return processCurvesSiteClass(
- (RequestDataSiteClass) requestData, url);
- default:
- throw new RuntimeException("Netcdf service [" + service + "] not found");
- }
- }
-
- @Override
- Response<RequestDataSiteClass, ResponseData<ResponseMetadata>> processCurvesSiteClass(
- RequestDataSiteClass request,
- String url) {
- WsUtils.checkValue(Key.LATITUDE, request.site.latitude);
- WsUtils.checkValue(Key.LONGITUDE, request.site.longitude);
- WsUtils.checkValue(Key.SITE_CLASS, request.siteClass);
- var curves = netcdf().staticData(request.site, request.siteClass);
- var responseData = toResponseData(request, curves);
- return new Response<>(Status.SUCCESS, SERVICE_NAME, request, responseData, url);
- }
-
- @Override
- Response<RequestData, List<ResponseData<ResponseMetadata>>> processCurves(RequestData request,
- String url) {
- WsUtils.checkValue(Key.LATITUDE, request.site.latitude);
- WsUtils.checkValue(Key.LONGITUDE, request.site.longitude);
- var curves = netcdf().staticData(request.site);
- var responseData = toList(request.site, curves);
- return new Response<>(Status.SUCCESS, SERVICE_NAME, request, responseData, url);
- }
-
- List<ResponseData<ResponseMetadata>> toList(
- Location site,
- StaticData<XySequence> curves) {
- return curves.entrySet().stream()
- .map(entry -> {
- var request = new RequestDataSiteClass(site, entry.getKey());
- return toResponseData(request, entry.getValue());
- })
- .collect(Collectors.toList());
- }
-
- ResponseData<ResponseMetadata> toResponseData(
- RequestDataSiteClass request,
- XySequence curves) {
- var metadata = new ResponseMetadataGroundMotions(
- X_LABEL,
- Y_LABEL,
- request.site,
- request.siteClass);
- return new ResponseData<>(metadata, curves);
- }
-
- static class ResponseMetadataGroundMotions extends ResponseMetadata {
- Map<String, Double> imtValues;
-
- ResponseMetadataGroundMotions(
- String xLabel,
- String yLabel,
- Location site,
- NehrpSiteClass siteClass) {
- super(xLabel, yLabel, site, siteClass);
- imtValues = Map.of(
- Imt.PGA.name(),
- BoundingReaderGroundMotions.PGA_VALUE,
- Imt.PGV.name(),
- BoundingReaderGroundMotions.PGV_VALUE);
- }
- }
-}
diff --git a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/www/NetcdfServiceHazardCurves.java b/src/main/java/gov/usgs/earthquake/nshmp/netcdf/www/NetcdfServiceHazardCurves.java
deleted file mode 100644
index 51c5842d2fe0fd2beab761ed80e0ab5cd8fa1f62..0000000000000000000000000000000000000000
--- a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/www/NetcdfServiceHazardCurves.java
+++ /dev/null
@@ -1,141 +0,0 @@
-package gov.usgs.earthquake.nshmp.netcdf.www;
-
-import java.util.List;
-import java.util.stream.Collectors;
-
-import gov.usgs.earthquake.nshmp.data.XySequence;
-import gov.usgs.earthquake.nshmp.geo.Location;
-import gov.usgs.earthquake.nshmp.gmm.Imt;
-import gov.usgs.earthquake.nshmp.gmm.NehrpSiteClass;
-import gov.usgs.earthquake.nshmp.netcdf.NetcdfHazardCurves;
-import gov.usgs.earthquake.nshmp.netcdf.data.StaticData;
-import gov.usgs.earthquake.nshmp.netcdf.data.StaticDataHazardCurves;
-import gov.usgs.earthquake.nshmp.netcdf.www.NetcdfController.Query;
-import gov.usgs.earthquake.nshmp.netcdf.www.NetcdfController.Service;
-import gov.usgs.earthquake.nshmp.netcdf.www.NetcdfWsUtils.Key;
-import gov.usgs.earthquake.nshmp.www.Response;
-import gov.usgs.earthquake.nshmp.www.WsUtils;
-import gov.usgs.earthquake.nshmp.www.meta.Status;
-
-import io.micronaut.http.HttpRequest;
-
-/**
- * Handles service calls for hazard curves.
- *
- * @see NetcdfController
- *
- * @author U.S. Geological Survey
- */
-public class NetcdfServiceHazardCurves extends NetcdfService {
-
- static final String SERVICE_DESCRIPTION = "Get static hazard curves from a NetCDF file";
- static final String SERVICE_NAME = "Static Hazard Curves";
- static final String X_LABEL = "Ground Motion (g)";
- static final String Y_LABEL = "Annual Frequency of Exceedence";
-
- NetcdfServiceHazardCurves(NetcdfHazardCurves netcdf) {
- super(netcdf);
- }
-
- @Override
- Response<String, Metadata> getMetadataResponse(HttpRequest<?> request) {
- var metadata = new Metadata(request, SERVICE_DESCRIPTION);
- var url = request.getUri().toString();
- return new Response<>(Status.USAGE, SERVICE_NAME, url, metadata, url);
- }
-
- @Override
- String getServiceName() {
- return SERVICE_NAME;
- }
-
- @Override
- NetcdfHazardCurves netcdf() {
- return (NetcdfHazardCurves) netcdf;
- }
-
- @Override
- Response<RequestData, List<List<ResponseData<ResponseMetadataHazard>>>> processCurves(
- RequestData request,
- String url) {
- WsUtils.checkValue(Key.LATITUDE, request.site.latitude);
- WsUtils.checkValue(Key.LONGITUDE, request.site.longitude);
- var curves = netcdf().staticData(request.site);
- var curvesAsList = toList(request.site, curves);
- return new Response<>(Status.SUCCESS, SERVICE_NAME, request, curvesAsList, url);
- }
-
- @Override
- Response<RequestDataSiteClass, List<ResponseData<ResponseMetadataHazard>>> processCurvesSiteClass(
- RequestDataSiteClass request,
- String url) {
- WsUtils.checkValue(Key.LATITUDE, request.site.latitude);
- WsUtils.checkValue(Key.LONGITUDE, request.site.longitude);
- WsUtils.checkValue(Key.SITE_CLASS, request.siteClass);
- var curves = netcdf().staticData(request.site, request.siteClass);
- var curvesAsList = toList(request, curves);
- return new Response<>(Status.SUCCESS, SERVICE_NAME, request, curvesAsList, url);
- }
-
- @Override
- Response<?, ?> processRequest(HttpRequest<?> httpRequest, Query query, Service service) {
- var site = Location.create(query.longitude, query.latitude);
- var requestData = new RequestData(site);
- var url = httpRequest.getUri().toString();
-
- switch (service) {
- case CURVES:
- return processCurves(requestData, url);
- case CURVES_BY_SITE_CLASS:
- requestData = new RequestDataSiteClass(site, query.siteClass);
- return processCurvesSiteClass(
- (RequestDataSiteClass) requestData, url);
- default:
- throw new RuntimeException("Netcdf service [" + service + "] not found");
- }
- }
-
- List<ResponseData<ResponseMetadataHazard>> toList(
- RequestDataSiteClass request,
- StaticDataHazardCurves curves) {
- return curves.entrySet().stream()
- .map((entry) -> {
- return toResponseData(request, entry.getKey(), entry.getValue());
- })
- .collect(Collectors.toList());
- }
-
- List<List<ResponseData<ResponseMetadataHazard>>> toList(
- Location site,
- StaticData<StaticDataHazardCurves> curves) {
- return curves.entrySet().stream()
- .map(entry -> {
- var request = new RequestDataSiteClass(site, entry.getKey());
- return toList(request, entry.getValue());
- })
- .collect(Collectors.toList());
- }
-
- ResponseData<ResponseMetadataHazard> toResponseData(
- RequestDataSiteClass request,
- Imt imt,
- XySequence curves) {
- var metadata =
- new ResponseMetadataHazard(X_LABEL, Y_LABEL, request.site, request.siteClass, imt);
- return new ResponseData<>(metadata, curves);
- }
-
- static class ResponseMetadataHazard extends ResponseMetadata {
- final Imt imt;
-
- ResponseMetadataHazard(
- String xLabel,
- String yLabel,
- Location site,
- NehrpSiteClass siteClass,
- Imt imt) {
- super(xLabel, yLabel, site, siteClass);
- this.imt = imt;
- }
- }
-}
diff --git a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/www/NetcdfWsUtils.java b/src/main/java/gov/usgs/earthquake/nshmp/netcdf/www/NetcdfWsUtils.java
deleted file mode 100644
index 79dafabeadec0284ad344845b51910568287f8f0..0000000000000000000000000000000000000000
--- a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/www/NetcdfWsUtils.java
+++ /dev/null
@@ -1,79 +0,0 @@
-package gov.usgs.earthquake.nshmp.netcdf.www;
-
-import static com.google.common.base.CaseFormat.UPPER_CAMEL;
-import static com.google.common.base.CaseFormat.UPPER_UNDERSCORE;
-
-import java.lang.reflect.Type;
-import java.util.logging.Logger;
-
-import com.google.gson.Gson;
-import com.google.gson.GsonBuilder;
-import com.google.gson.JsonElement;
-import com.google.gson.JsonObject;
-import com.google.gson.JsonSerializationContext;
-import com.google.gson.JsonSerializer;
-
-import gov.usgs.earthquake.nshmp.Maths;
-import gov.usgs.earthquake.nshmp.geo.Location;
-import gov.usgs.earthquake.nshmp.gmm.Imt;
-import gov.usgs.earthquake.nshmp.gmm.NehrpSiteClass;
-import gov.usgs.earthquake.nshmp.www.Response;
-import gov.usgs.earthquake.nshmp.www.WsUtils.EnumSerializer;
-import gov.usgs.earthquake.nshmp.www.WsUtils.NaNSerializer;
-import gov.usgs.earthquake.nshmp.www.meta.Status;
-
-import io.micronaut.http.HttpResponse;
-
-public class NetcdfWsUtils {
- static final Gson GSON;
-
- private static final Logger LOGGER = Logger.getLogger(NetcdfWsUtils.class.getName());
-
- static {
- GSON = new GsonBuilder()
- .registerTypeAdapter(Imt.class, new EnumSerializer<Imt>())
- .registerTypeAdapter(NehrpSiteClass.class, new EnumSerializer<NehrpSiteClass>())
- .registerTypeAdapter(Double.class, new NaNSerializer())
- .registerTypeAdapter(Location.class, new LocationSerializer())
- .disableHtmlEscaping()
- .serializeNulls()
- .setPrettyPrinting()
- .create();
- }
-
- public static HttpResponse<String> handleError(
- Throwable e,
- String name,
- String url) {
- var msg = e.getMessage() + " (see logs)";
- var svcResponse = new Response<>(Status.ERROR, name, url, msg, url);
- var response = GSON.toJson(svcResponse);
- LOGGER.severe(name + " -\n" + response);
- e.printStackTrace();
- return HttpResponse.serverError(response);
- }
-
- static enum Key {
- LATITUDE,
- LONGITUDE,
- SITE_CLASS,
- IMT;
-
- @Override
- public String toString() {
- return UPPER_UNDERSCORE.to(UPPER_CAMEL, name());
- }
- }
-
- public static final class LocationSerializer implements JsonSerializer<Location> {
-
- @Override
- public JsonElement serialize(Location location, Type type, JsonSerializationContext context) {
- JsonObject jObj = new JsonObject();
- jObj.addProperty("longitude", Maths.round(location.longitude, 5));
- jObj.addProperty("latitude", Maths.round(location.latitude, 5));
-
- return jObj;
- }
- }
-}
diff --git a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/www/SwaggerController.java b/src/main/java/gov/usgs/earthquake/nshmp/netcdf/www/SwaggerController.java
deleted file mode 100644
index ec3e9dfc765f07f26416d4678e715ac009e5720c..0000000000000000000000000000000000000000
--- a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/www/SwaggerController.java
+++ /dev/null
@@ -1,46 +0,0 @@
-package gov.usgs.earthquake.nshmp.netcdf.www;
-
-import java.nio.charset.StandardCharsets;
-import java.util.stream.Collectors;
-
-import com.google.common.io.Resources;
-
-import gov.usgs.earthquake.nshmp.www.NshmpMicronautServlet;
-
-import io.micronaut.http.HttpRequest;
-import io.micronaut.http.HttpResponse;
-import io.micronaut.http.MediaType;
-import io.micronaut.http.annotation.Controller;
-import io.micronaut.http.annotation.Get;
-import io.swagger.v3.oas.annotations.Hidden;
-import io.swagger.v3.oas.annotations.tags.Tag;
-import jakarta.inject.Inject;
-
-/**
- * Expose OpenAPI YAML file.
- *
- * @author U.S. Geological Survey
- */
-@Tag(
- name = "Swagger",
- description = "Swagger OpenAPI YAML")
-@Hidden
-@Controller("/swagger")
-public class SwaggerController {
-
- @Inject
- private NshmpMicronautServlet servlet;
-
- @Get(produces = MediaType.TEXT_EVENT_STREAM)
- public HttpResponse<String> doGet(HttpRequest<?> request) {
- try {
- var url = Resources.getResource("META-INF/swagger/nshmp-ws-static.yml");
- var yml = Resources.readLines(url, StandardCharsets.UTF_8)
- .stream()
- .collect(Collectors.joining("\n"));
- return HttpResponse.ok(yml);
- } catch (Exception e) {
- return NetcdfWsUtils.handleError(e, "Swagger", request.getUri().getPath());
- }
- }
-}
diff --git a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/www/meta/DoubleParameter.java b/src/main/java/gov/usgs/earthquake/nshmp/netcdf/www/meta/DoubleParameter.java
deleted file mode 100644
index 6a4bd319d258a4b28f2a585c7231213739de187d..0000000000000000000000000000000000000000
--- a/src/main/java/gov/usgs/earthquake/nshmp/netcdf/www/meta/DoubleParameter.java
+++ /dev/null
@@ -1,16 +0,0 @@
-package gov.usgs.earthquake.nshmp.netcdf.www.meta;
-
-public final class DoubleParameter {
-
- private final String name;
- private final String units;
- private final double min;
- private final double max;
-
- public DoubleParameter(String name, String units, double min, double max) {
- this.name = name;
- this.units = units;
- this.min = min;
- this.max = max;
- }
-}
diff --git a/src/main/resources/application.yml b/src/main/resources/application.yml
deleted file mode 100644
index 448a7d535a1b583240dcdbd0dacac534c08ad192..0000000000000000000000000000000000000000
--- a/src/main/resources/application.yml
+++ /dev/null
@@ -1,17 +0,0 @@
-micronaut:
- io:
- watch:
- paths: src
- restart: true
- router:
- static-resources:
- swagger:
- enabled: true
- paths: classpath:swagger
- mapping: /**
-
-nshmp-ws-static:
- # Hazard example
- netcdf-file: ${netcdf:src/main/resources/hazard-example.nc}
- # Ground motions example
- # netcdf-file: ${netcdf:src/main/resources/rtsa-example.nc}
diff --git a/src/main/resources/eclipse.importorder b/src/main/resources/eclipse.importorder
deleted file mode 100644
index 2ef1b480f52563e1089abcb404d3476e8a89931b..0000000000000000000000000000000000000000
--- a/src/main/resources/eclipse.importorder
+++ /dev/null
@@ -1,7 +0,0 @@
-#Organize Import Order
-0=java
-1=javax
-2=org
-3=com
-4=gov
-5=ucar
diff --git a/src/main/resources/hazard-example.nc b/src/main/resources/hazard-example.nc
deleted file mode 100644
index 521866c0689b6ad029a2bfd7f3461ad9e69363f4..0000000000000000000000000000000000000000
Binary files a/src/main/resources/hazard-example.nc and /dev/null differ
diff --git a/src/main/resources/logback.xml b/src/main/resources/logback.xml
deleted file mode 100644
index f74e41693090ae1b24cabe0642f4ec814564c4a1..0000000000000000000000000000000000000000
--- a/src/main/resources/logback.xml
+++ /dev/null
@@ -1,17 +0,0 @@
-<configuration>
-
- <appender name="STDOUT"
- class="ch.qos.logback.core.ConsoleAppender">
- <withJansi>true</withJansi>
- <!-- encoders are assigned the type ch.qos.logback.classic.encoder.PatternLayoutEncoder
- by default -->
- <encoder>
- <pattern>%cyan(%d{HH:mm:ss.SSS}) %gray([%thread])
- %highlight(%-5level) %magenta(%logger{36}) - %msg%n</pattern>
- </encoder>
- </appender>
-
- <root level="info">
- <appender-ref ref="STDOUT" />
- </root>
-</configuration>
diff --git a/src/main/resources/nshmp.eclipse-format.xml b/src/main/resources/nshmp.eclipse-format.xml
deleted file mode 100644
index 181dbd16d380cb5688372df1ca124177b8c583f0..0000000000000000000000000000000000000000
--- a/src/main/resources/nshmp.eclipse-format.xml
+++ /dev/null
@@ -1,916 +0,0 @@
-<?xml version="1.0" encoding="UTF-8" standalone="no"?>
-<profiles version="13">
- <profile kind="CodeFormatterProfile" name="nshmp" version="13">
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_after_ellipsis"
- value="insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_enum_declarations"
- value="insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_new_line_in_empty_annotation_declaration"
- value="do not insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_allocation_expression"
- value="do not insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_before_at_in_annotation_type_declaration"
- value="insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.parentheses_positions_in_for_statment"
- value="common_lines" />
- <setting
- id="org.eclipse.jdt.core.formatter.comment.new_lines_at_block_boundaries"
- value="true" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_constructor_declaration_parameters"
- value="insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.comment.insert_new_line_for_parameter"
- value="do not insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_new_line_after_annotation_on_package"
- value="insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.parentheses_positions_in_method_invocation"
- value="common_lines" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_between_empty_parens_in_enum_constant"
- value="do not insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.blank_lines_after_imports"
- value="1" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_while"
- value="do not insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.comment.insert_new_line_before_root_tags"
- value="do not insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_between_empty_parens_in_annotation_type_member_declaration"
- value="do not insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_method_declaration_throws"
- value="do not insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.parentheses_positions_in_switch_statement"
- value="common_lines" />
- <setting
- id="org.eclipse.jdt.core.formatter.comment.format_javadoc_comments"
- value="true" />
- <setting id="org.eclipse.jdt.core.formatter.indentation.size"
- value="2" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_after_postfix_operator"
- value="do not insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.parentheses_positions_in_enum_constant_declaration"
- value="common_lines" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_for_increments"
- value="insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_type_arguments"
- value="insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_for_inits"
- value="do not insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_new_line_in_empty_anonymous_type_declaration"
- value="do not insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_after_semicolon_in_for"
- value="insert" />
- <setting id="org.eclipse.jdt.core.formatter.disabling_tag"
- value="@formatter:off" />
- <setting
- id="org.eclipse.jdt.core.formatter.continuation_indentation"
- value="2" />
- <setting
- id="org.eclipse.jdt.core.formatter.alignment_for_enum_constants"
- value="81" />
- <setting
- id="org.eclipse.jdt.core.formatter.blank_lines_before_imports"
- value="1" />
- <setting
- id="org.eclipse.jdt.core.formatter.blank_lines_after_package"
- value="1" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_after_binary_operator"
- value="insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_multiple_local_declarations"
- value="insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.parentheses_positions_in_if_while_statement"
- value="common_lines" />
- <setting
- id="org.eclipse.jdt.core.formatter.alignment_for_arguments_in_enum_constant"
- value="16" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_after_opening_angle_bracket_in_parameterized_type_reference"
- value="do not insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.comment.indent_root_tags"
- value="true" />
- <setting
- id="org.eclipse.jdt.core.formatter.wrap_before_or_operator_multicatch"
- value="true" />
- <setting id="org.eclipse.jdt.core.formatter.enabling_tag"
- value="@formatter:on" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_after_closing_brace_in_block"
- value="insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.comment.count_line_length_from_starting_position"
- value="false" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_before_parenthesized_expression_in_return"
- value="insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.alignment_for_throws_clause_in_method_declaration"
- value="16" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_new_line_after_annotation_on_parameter"
- value="do not insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.keep_then_statement_on_same_line"
- value="false" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_new_line_after_annotation_on_field"
- value="insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_explicitconstructorcall_arguments"
- value="insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_new_line_in_empty_block"
- value="do not insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_after_prefix_operator"
- value="do not insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.blank_lines_between_type_declarations"
- value="2" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_before_closing_brace_in_array_initializer"
- value="insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_for"
- value="do not insert" />
- <setting
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- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_method_declaration"
- value="do not insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_if"
- value="do not insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_before_semicolon"
- value="do not insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_before_postfix_operator"
- value="do not insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_try"
- value="do not insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_before_opening_angle_bracket_in_type_arguments"
- value="do not insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_cast"
- value="do not insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.comment.format_block_comments"
- value="true" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_before_lambda_arrow"
- value="insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_method_declaration"
- value="do not insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.keep_imple_if_on_one_line"
- value="true" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_enum_declaration"
- value="insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.alignment_for_parameters_in_method_declaration"
- value="16" />
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- id="org.eclipse.jdt.core.formatter.insert_space_between_brackets_in_array_type_reference"
- value="do not insert" />
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- id="org.eclipse.jdt.core.formatter.insert_space_before_opening_angle_bracket_in_type_parameters"
- value="do not insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_before_semicolon_in_for"
- value="do not insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_method_declaration_throws"
- value="insert" />
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- id="org.eclipse.jdt.core.formatter.insert_space_before_opening_bracket_in_array_allocation_expression"
- value="do not insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.indent_statements_compare_to_body"
- value="true" />
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- id="org.eclipse.jdt.core.formatter.alignment_for_multiple_fields"
- value="16" />
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- id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_enum_constant_arguments"
- value="insert" />
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- id="org.eclipse.jdt.core.formatter.insert_space_before_prefix_operator"
- value="do not insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.brace_position_for_array_initializer"
- value="end_of_line" />
- <setting
- id="org.eclipse.jdt.core.formatter.wrap_before_binary_operator"
- value="false" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_method_declaration"
- value="insert" />
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- value="insert" />
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- id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_catch"
- value="do not insert" />
- <setting id="org.eclipse.jdt.core.compiler.compliance"
- value="1.8" />
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- id="org.eclipse.jdt.core.formatter.insert_space_before_closing_bracket_in_array_reference"
- value="do not insert" />
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- id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_annotation"
- value="insert" />
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- id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_enum_constant_arguments"
- value="do not insert" />
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- id="org.eclipse.jdt.core.formatter.parentheses_positions_in_lambda_declaration"
- value="common_lines" />
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- value="do not insert" />
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- value="do not insert" />
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- id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_multiple_local_declarations"
- value="do not insert" />
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- id="org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_annotation_type_declaration"
- value="insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_before_opening_bracket_in_array_reference"
- value="do not insert" />
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- id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_method_declaration"
- value="do not insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.wrap_outer_expressions_when_nested"
- value="true" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_after_closing_paren_in_cast"
- value="insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.brace_position_for_enum_constant"
- value="end_of_line" />
- <setting
- id="org.eclipse.jdt.core.formatter.brace_position_for_type_declaration"
- value="end_of_line" />
- <setting
- id="org.eclipse.jdt.core.formatter.blank_lines_before_package"
- value="0" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_for"
- value="insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_synchronized"
- value="insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_for_increments"
- value="do not insert" />
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- id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_annotation_type_member_declaration"
- value="do not insert" />
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- id="org.eclipse.jdt.core.formatter.alignment_for_expressions_in_for_loop_header"
- value="0" />
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- id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_while"
- value="do not insert" />
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- id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_enum_constant"
- value="do not insert" />
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- value="do not insert" />
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- value="do not insert" />
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- id="org.eclipse.jdt.core.formatter.insert_space_after_opening_angle_bracket_in_type_parameters"
- value="do not insert" />
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- value="true" />
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- id="org.eclipse.jdt.core.formatter.insert_space_after_lambda_arrow"
- value="insert" />
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- id="org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_constructor_declaration"
- value="insert" />
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- id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_constructor_declaration_throws"
- value="do not insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.join_lines_in_comments"
- value="true" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_before_closing_angle_bracket_in_type_parameters"
- value="do not insert" />
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- id="org.eclipse.jdt.core.formatter.insert_space_before_question_in_conditional"
- value="insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.comment.indent_parameter_description"
- value="false" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_new_line_before_finally_in_try_statement"
- value="do not insert" />
- <setting id="org.eclipse.jdt.core.formatter.tabulation.char"
- value="space" />
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- id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_multiple_field_declarations"
- value="do not insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.blank_lines_between_import_groups"
- value="1" />
- <setting id="org.eclipse.jdt.core.formatter.lineSplit"
- value="100" />
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- id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_annotation"
- value="do not insert" />
- <setting
- id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_switch"
- value="insert" />
- </profile>
-</profiles>
diff --git a/src/main/resources/rtsa-example.nc b/src/main/resources/rtsa-example.nc
deleted file mode 100644
index 0b4e8d883e15107bd60ed7fc8bde3a9da0066427..0000000000000000000000000000000000000000
Binary files a/src/main/resources/rtsa-example.nc and /dev/null differ
diff --git a/src/main/resources/swagger/favicon.ico b/src/main/resources/swagger/favicon.ico
deleted file mode 100644
index 0c3e87c87b8ecc9900a3b6368598be574e9d0716..0000000000000000000000000000000000000000
Binary files a/src/main/resources/swagger/favicon.ico and /dev/null differ
diff --git a/src/main/resources/swagger/index.css b/src/main/resources/swagger/index.css
deleted file mode 100644
index 65f90aca32b0c4145e7f2e7fa437cb2448e84b59..0000000000000000000000000000000000000000
--- a/src/main/resources/swagger/index.css
+++ /dev/null
@@ -1,73 +0,0 @@
-html,
-body {
- height: 100%;
- overflow: hidden;
-}
-
-body {
- color: #333;
- font-family: 'Roboto', 'Helvetica Neue', Helvetica, Arial, sans-serif;
- margin: 0;
- overflow: scroll;
-}
-
-#swagger-ui {
- padding-top: 1em;
- padding-bottom: 50px;
-}
-
-.nshmp-template-header,
-.nshmp-template-footer {
- background-color: #3d5e80;
- box-shadow: 0 1px 8px rgba(0, 0, 0, 0.5);
- height: 30px;
- padding: 10px;
- position: fixed;
- width: 100vw;
- z-index: 4;
-}
-
-/* ---- Header ---- */
-
-.nshmp-template-header {
- top: 0;
-}
-
-.nshmp-template-header .nshmp-template-header--logo {
- height: 28px;
- overflow: hidden;
-
-}
-
-.nshmp-template-header--logo .usgs-logo {
- display: inline-block;
- height: 100%;
- position: relative;
-
-}
-
-.nshmp-template-header--logo .usgs-logo img {
- border: none;
- height: 140%;
- max-width: 100%;
-}
-
-/* ---- Footer ---- */
-
-.nshmp-template-footer {
- bottom: 0;
- font-size: large;
- text-align: center;
-}
-
-.nshmp-template-footer a {
- color: white;
- cursor: pointer;
- line-height: 30px;
- padding: 0 1em;
- text-decoration: none;
-}
-
-.nshmp-template-footer a:visited {
- color: white;
-}
diff --git a/src/main/resources/swagger/index.html b/src/main/resources/swagger/index.html
deleted file mode 100644
index 5bd722b5c63c977af1306b9b58e7b4d85308c8b3..0000000000000000000000000000000000000000
--- a/src/main/resources/swagger/index.html
+++ /dev/null
@@ -1,54 +0,0 @@
-<!DOCTYPE html>
-<html lang="en">
- <head>
- <title>NSHMP Static Data Services</title>
- <meta charset="UTF-8" />
- <link
- rel="icon"
- type="image/x-icon"
- href="favicon.ico"
- />
- <script src="https://unpkg.com/swagger-ui-dist/swagger-ui-bundle.js"></script>
- <script src="https://unpkg.com/swagger-ui-dist/swagger-ui-standalone-preset.js"></script>
- <link
- rel="stylesheet"
- type="text/css"
- href="https://unpkg.com/swagger-ui-dist/swagger-ui.css"
- />
- <link
- rel="stylesheet"
- type="text/css"
- href="https://unpkg.com/swagger-ui-themes@3.0.0/themes/3.x/theme-material.css"
- />
- <link
- rel="stylesheet"
- type="text/css"
- href="index.css"
- />
- </head>
-
- <body>
- <header class="nshmp-template-header">
- <div class="nshmp-template-header--logo">
- <a href="" class="usgs-logo">
- <img alt="USGS" src="usgs-logo.svg" />
- </a>
- </div>
- </header>
-
- <div id="swagger-ui"></div>
-
- <footer class="nshmp-template-footer">
- <a href="https://code.usgs.gov/ghsc/nshmp/nshmp-ws-static/-/blob/main/LICENSE.md">
- License
- </a>
-
- <a href="https://code.usgs.gov/ghsc/nshmp/nshmp-ws-static/-/blob/main/DISCLAIMER.md">
- Disclaimer
- </a>
-
- </footer>
-
- <script src="index.js"></script>
- </body>
-</html>
diff --git a/src/main/resources/swagger/index.js b/src/main/resources/swagger/index.js
deleted file mode 100644
index 06e5a1326e3df94485c3d6879f3d3d773b4dcecf..0000000000000000000000000000000000000000
--- a/src/main/resources/swagger/index.js
+++ /dev/null
@@ -1,38 +0,0 @@
-window.onload = function() {
- let contextPath = window.location.pathname;
- contextPath = contextPath.endsWith('/') ? contextPath.slice(0, -1) : contextPath;
-
- const ui = SwaggerUIBundle({
- url: `./swagger`,
- dom_id: '#swagger-ui',
- tagsSorter: 'alpha',
- presets: [SwaggerUIBundle.presets.apis, SwaggerUIStandalonePreset],
- plugins: [SwaggerUIBundle.plugins.DownloadUrl, updateContextPath(contextPath)],
- validatorUrl: null,
- deepLinking: true
- });
-
- window.ui = ui;
-};
-
-function updateContextPath(contextPath) {
- return {
- statePlugins: {
- spec: {
- wrapActions: {
- updateJsonSpec: (oriAction) => (...args) => {
- const [spec] = args;
- if (spec && spec.paths) {
- const newPaths = {};
- Object.entries(spec.paths).forEach(
- ([path, value]) => (newPaths[contextPath + path] = value)
- );
- spec.paths = newPaths;
- }
- oriAction(...args);
- },
- },
- },
- },
- };
-}
diff --git a/src/main/resources/swagger/usgs-logo.svg b/src/main/resources/swagger/usgs-logo.svg
deleted file mode 100644
index d33f18c4c10451bc3a3540afabb67f420775b8cf..0000000000000000000000000000000000000000
--- a/src/main/resources/swagger/usgs-logo.svg
+++ /dev/null
@@ -1 +0,0 @@
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class="a"/><path d="M1784 415.3h73.9v132.5l-6.1 2.3c-19.1 6.7-41.6 11.6-62.4 11.6 -71.5 0-89.8-33.3-89.8-221.2 0-116.4 0-222 78.2-222 60.8 0 73.6 41 74.8 90.6h125.1c1-116.5-74-180.4-192.3-180.4 -205.4 0-212.9 153.8-212.9 305.2 0 227.8 24.7 316.2 235.9 316.2 49 0 127-11.1 163-20.9 2.2-0.6 6.1-3 6.1-6.1 0-16.4 0-298.4 0-298.4h-193.3V415.3L1784 415.3z" class="a"/><path d="M71.3 823.1c-1.2 4.8-2 9.5-1.2 12.8 1 3.4 3.8 5 9.6 5s11.7-3.8 13.2-10.9c4.8-22.5-48.3-17.4-41.2-51.2 4.9-22.9 29-29.8 48.1-29.8 20.1 0 36.3 9.7 29.8 32.5h-29c1.6-7.3 1.7-11.7 0-13.6 -1.5-1.9-3.9-2.3-7.1-2.3 -6.5 0-11 4.2-12.5 11.3 -3.6 16.8 48.7 15.9 41.4 49.9 -3.9 18.5-22 32.3-46.5 32.3 -25.8 0-41.6-6.5-33.7-36.1H71.3L71.3 823.1z" class="a"/><path d="M197.9 789c3.3-15.7 0.5-21-8.8-21 -12.6 0-16 11.1-20.7 33.2 -6.9 32.3-5.6 39.2 5.3 39.2 9.2 0 15.4-8.4 18.4-22.2h29.6c-6.1 28.7-24.3 41.1-52 41.1 -38.2 0-38.3-23.3-31.2-56.4 6.2-28.9 15.6-53.7 54.6-53.7 27.3 0 40.2 12.2 34.3 39.9H197.9z" class="a"/><path d="M258.7 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\ No newline at end of file
diff --git a/src/test/java/gov/usgs/earthquake/nshmp/netcdf/SiteClassTests.java b/src/test/java/gov/usgs/earthquake/nshmp/netcdf/SiteClassTests.java
deleted file mode 100644
index 67f4f1cb2c9e53d212763590bad0b9c58f1875bf..0000000000000000000000000000000000000000
--- a/src/test/java/gov/usgs/earthquake/nshmp/netcdf/SiteClassTests.java
+++ /dev/null
@@ -1,41 +0,0 @@
-package gov.usgs.earthquake.nshmp.netcdf;
-
-import static org.junit.jupiter.api.Assertions.assertEquals;
-import static org.junit.jupiter.api.Assertions.assertThrows;
-
-import org.junit.jupiter.api.Test;
-
-class SiteClassTests {
-
- @Test
- final void testVs30() {
- assertEquals(2000, SiteClass.A.vs30());
- assertEquals(1500, SiteClass.AB.vs30());
- assertEquals(1080, SiteClass.B.vs30());
- assertEquals(760, SiteClass.BC.vs30());
- assertEquals(530, SiteClass.C.vs30());
- assertEquals(365, SiteClass.CD.vs30());
- assertEquals(260, SiteClass.D.vs30());
- assertEquals(185, SiteClass.DE.vs30());
- assertEquals(150, SiteClass.E.vs30());
- }
-
- @Test
- final void testOfValue() {
- assertEquals(SiteClass.A, SiteClass.ofValue(2000));
- assertEquals(SiteClass.AB, SiteClass.ofValue(1500));
- assertEquals(SiteClass.B, SiteClass.ofValue(1080));
- assertEquals(SiteClass.BC, SiteClass.ofValue(760));
- assertEquals(SiteClass.C, SiteClass.ofValue(530));
- assertEquals(SiteClass.CD, SiteClass.ofValue(365));
- assertEquals(SiteClass.D, SiteClass.ofValue(260));
- assertEquals(SiteClass.DE, SiteClass.ofValue(185));
- assertEquals(SiteClass.E, SiteClass.ofValue(150));
-
- assertThrows(IllegalArgumentException.class,
- () -> {
- SiteClass.ofValue(0);
- });
- }
-
-}
diff --git a/src/test/resources/invalid-netcdf-file.nc b/src/test/resources/invalid-netcdf-file.nc
deleted file mode 100644
index 24d309ee84916c2518cfd90f8acbb2741cc34795..0000000000000000000000000000000000000000
--- a/src/test/resources/invalid-netcdf-file.nc
+++ /dev/null
@@ -1 +0,0 @@
-invalid netcdf file
diff --git a/src/test/resources/map-netcdf-test-0p05.geojson b/src/test/resources/map-netcdf-test-0p05.geojson
deleted file mode 100644
index 819addfaddbb0da515d7f47c0bf94e657394d4c7..0000000000000000000000000000000000000000
--- a/src/test/resources/map-netcdf-test-0p05.geojson
+++ /dev/null
@@ -1,50 +0,0 @@
-{
- "type": "FeatureCollection",
- "features": [
- {
- "type": "Feature",
- "id": "Extents",
- "geometry": {
- "type": "Polygon",
- "coordinates": [
- [
- [-105.31, 39.15],
- [-105.31, 39.31],
- [-105.10, 39.31],
- [-105.10, 39.15],
- [-105.31, 39.15]
- ]
- ]
- },
- "properties": {
- "fill": "#AA0078",
- "stroke": "#AA0078",
- "title": "Conterminous US Map Extents"
- }
- },
- {
- "type": "Feature",
- "geometry": {
- "type": "Polygon",
- "coordinates": [
- [
- [-105.31, 39.15],
- [-105.25, 39.25],
- [-105.30, 39.25],
- [-105.30, 39.31],
- [-105.22, 39.30],
- [-105.15, 39.30],
- [-105.15, 39.25],
- [-105.10, 39.25],
- [-105.13, 39.15],
- [-105.31, 39.15]
- ]
- ]
- },
- "properties": {
- "spacing": 0.05,
- "title": "Conterminous US netCDF Test Region"
- }
- }
- ]
-}
diff --git a/src/test/resources/nshmp-conus-test-fv.0.3.nc b/src/test/resources/nshmp-conus-test-fv.0.3.nc
deleted file mode 100644
index 1cff28e4aabc1888e673b28fe86f0a8c4444e7af..0000000000000000000000000000000000000000
Binary files a/src/test/resources/nshmp-conus-test-fv.0.3.nc and /dev/null differ
diff --git a/src/test/resources/nshmp-conus-test-fv.0.4.nc b/src/test/resources/nshmp-conus-test-fv.0.4.nc
deleted file mode 100644
index 3d1966c875908dba6b6c2a5d83e06a8456600750..0000000000000000000000000000000000000000
Binary files a/src/test/resources/nshmp-conus-test-fv.0.4.nc and /dev/null differ
diff --git a/src/test/resources/nshmp-conus-test-fv.1.0.nc b/src/test/resources/nshmp-conus-test-fv.1.0.nc
deleted file mode 100644
index ac2e5d506110070fbba0ac34edb9748d38df4c15..0000000000000000000000000000000000000000
Binary files a/src/test/resources/nshmp-conus-test-fv.1.0.nc and /dev/null differ