Commit 600bf6e3 authored by Fisher, Jason C.'s avatar Fisher, Jason C.
Browse files

Fix invalid URL's and bump version

parent 878992d4
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## Code of Conduct ## Code of Conduct
All contributions to- and interactions surrounding- this project will abide by the [USGS Code of Scientific Conduct](https://www2.usgs.gov/fsp/fsp_code_of_scientific_conduct.asp). All contributions to- and interactions surrounding- this project will abide by the [USGS Code of Scientific Conduct](https://www.usgs.gov/about/organization/science-support/science-quality-and-integrity/fundamental-science-practices).
Package: inldata Package: inldata
Title: Collection of Datasets for the USGS-INL Aquifer Monitoring Networks Title: Collection of Datasets for the USGS-INL Aquifer Monitoring Networks
Version: 1.0.1 Version: 1.0.2
Authors@R: person(given = c("Jason", "C."), Authors@R: person(given = c("Jason", "C."),
family = "Fisher", role=c("aut", "cre"), family = "Fisher", role=c("aut", "cre"),
email = "jfisher@usgs.gov", email = "jfisher@usgs.gov",
......
# inlmisc 1.0.2
- Fixed invalid URL's.
# inldata 1.0.1 # inldata 1.0.1
- In DESCRIPTION file, move **sp** and **raster** form Suggests to Imports. - In DESCRIPTION file, move **sp** and **raster** form Suggests to Imports.
......
...@@ -8,7 +8,7 @@ ...@@ -8,7 +8,7 @@
#' Human Health Benchmarks for Pesticides #' Human Health Benchmarks for Pesticides
#' (\href{https://iaspub.epa.gov/apex/pesticides/f?p=HHBP:home}{HHBPs}), and #' (\href{https://iaspub.epa.gov/apex/pesticides/f?p=HHBP:home}{HHBPs}), and
#' the U.S. Geological Survey (USGS) Health-Based Screening Levels #' the U.S. Geological Survey (USGS) Health-Based Screening Levels
#' (\href{https://water.usgs.gov/nawqa/HBSL}{HBSLs}). #' (\href{https://water.usgs.gov/water-resources/hbsl/}{HBSLs}).
#' #'
#' @format A data frame with 74 records and 9 variables: #' @format A data frame with 74 records and 9 variables:
#' \describe{ #' \describe{
...@@ -28,7 +28,7 @@ ...@@ -28,7 +28,7 @@
#' #'
#' @source Many of the water-quality benchmarks were accessed from the #' @source Many of the water-quality benchmarks were accessed from the
#' U.S. Geological Survey Health-Based Screening Levels database, #' U.S. Geological Survey Health-Based Screening Levels database,
#' accessed on August 8, 2017, from \url{https://water.usgs.gov/nawqa/HBSL}. #' accessed on August 8, 2017, from \url{https://water.usgs.gov/water-resources/hbsl/}.
#' Benchmarks for total Trihalomethanes, Tritium, and Strontium-90 were #' Benchmarks for total Trihalomethanes, Tritium, and Strontium-90 were
#' provided by the U.S. Environmental Protection Agency (2015). #' provided by the U.S. Environmental Protection Agency (2015).
#' Note that MCL benchmark values reported in millirem per year were #' Note that MCL benchmark values reported in millirem per year were
......
#' Idaho National Laboratory Facilities #' Idaho National Laboratory Facilities
#' #'
#' Federal research facilities at the #' Federal research facilities at the
#' Idaho National Laboratory (\href{https://www.inl.gov/}{INL}). #' Idaho National Laboratory (\href{https://inl.gov/}{INL}).
#' #'
#' @format A SpatialPolygonsDataFrame object with 7 features and 1 variable. #' @format A SpatialPolygonsDataFrame object with 7 features and 1 variable.
#' See \code{\link{projection}} dataset for coordinate reference system information. #' See \code{\link{projection}} dataset for coordinate reference system information.
......
#' Idaho National Laboratory Boundary #' Idaho National Laboratory Boundary
#' #'
#' Boundary of the Idaho National Laboratory (\href{https://www.inl.gov/}{INL}). #' Boundary of the Idaho National Laboratory (\href{https://inl.gov/}{INL}).
#' #'
#' @format A SpatialPolygonsDataFrame of the \pkg{sp} package object with 1 feature and 4 variables. #' @format A SpatialPolygonsDataFrame of the \pkg{sp} package object with 1 feature and 4 variables.
#' See \code{\link{projection}} dataset for coordinate reference system information. #' See \code{\link{projection}} dataset for coordinate reference system information.
......
...@@ -11,7 +11,7 @@ ...@@ -11,7 +11,7 @@
#' \item{\code{parameter_group_nm}}{parameter group name, such as \code{"Radiochemical"}} #' \item{\code{parameter_group_nm}}{parameter group name, such as \code{"Radiochemical"}}
#' \item{\code{parameter_nm}}{long parameter name, such as \code{"Strontium-90, water, unfiltered, picocuries per liter"}} #' \item{\code{parameter_nm}}{long parameter name, such as \code{"Strontium-90, water, unfiltered, picocuries per liter"}}
#' \item{\code{casrn}}{Chemical Abstracts Service #' \item{\code{casrn}}{Chemical Abstracts Service
#' (\href{https://www.cas.org/content/chemical-substances/faqs}{CAS}) registry number, #' (\href{https://www.cas.org/support/documentation/chemical-substances/faqs}{CAS}) registry number,
#' such as \code{"10098-97-2"} for Strontium-90} #' such as \code{"10098-97-2"} for Strontium-90}
#' \item{\code{srsname}}{Substance Registry Services #' \item{\code{srsname}}{Substance Registry Services
#' (\href{https://iaspub.epa.gov/sor_internet/registry/substreg/home/overview/home.do}{SRS}) name, #' (\href{https://iaspub.epa.gov/sor_internet/registry/substreg/home/overview/home.do}{SRS}) name,
......
...@@ -12,7 +12,7 @@ ...@@ -12,7 +12,7 @@
#' and has cell sizes that are constant at 100 meters by 100 meters. #' and has cell sizes that are constant at 100 meters by 100 meters.
#' See \code{\link{projection}} dataset for coordinate reference system information. #' See \code{\link{projection}} dataset for coordinate reference system information.
#' #'
#' @source The National Map (\href{https://nationalmap.gov/elevation.html}{TNM}) #' @source The National Map (\href{https://www.usgs.gov/core-science-systems/national-geospatial-program/national-map}{TNM})
#' 1/3-arc-second DEM (Gesch, 2007; Gesch and others, 2002), accessed on August 4, 2020. #' 1/3-arc-second DEM (Gesch, 2007; Gesch and others, 2002), accessed on August 4, 2020.
#' This dataset can be downloaded in a Esri ArcGRID \eqn{\textsuperscript{TM}}{™} format using #' This dataset can be downloaded in a Esri ArcGRID \eqn{\textsuperscript{TM}}{™} format using
#' \href{https://viewer.nationalmap.gov/basic/}{TNM Download}. #' \href{https://viewer.nationalmap.gov/basic/}{TNM Download}.
......
...@@ -129,7 +129,7 @@ Code of Conduct ...@@ -129,7 +129,7 @@ Code of Conduct
All contributions to- and interactions surrounding- this project will All contributions to- and interactions surrounding- this project will
abide by the [USGS Code of Scientific abide by the [USGS Code of Scientific
Conduct](https://www2.usgs.gov/fsp/fsp_code_of_scientific_conduct.asp). Conduct](https://www.usgs.gov/about/organization/science-support/science-quality-and-integrity/fundamental-science-practices).
Disclaimer Disclaimer
---------- ----------
...@@ -268,7 +268,7 @@ Year of version ...@@ -268,7 +268,7 @@ Year of version
Version Version
</th> </th>
<td> <td>
1.0.0 1.0.2
</td> </td>
</tr> </tr>
<tr> <tr>
......
...@@ -30,7 +30,7 @@ Each of the package datasets represents a snapshot of the data at a specified po ...@@ -30,7 +30,7 @@ Each of the package datasets represents a snapshot of the data at a specified po
| +-- siteids.txt (site numbers) | +-- siteids.txt (site numbers)
+-- README.md +-- README.md
+-- background.tsv (background concentrations) +-- background.tsv (background concentrations)
+-- benchmarks.csv (benchmark concentrations, see https://water.usgs.gov/nawqa/HBSL) +-- benchmarks.csv (benchmark concentrations, see https://water.usgs.gov/water-resources/hbsl/)
+-- build-datasets.R (script for building datasets) +-- build-datasets.R (script for building datasets)
+-- counting-error.tsv (radioactivity counting error) +-- counting-error.tsv (radioactivity counting error)
+-- detection-limites.tsv (laboratory detection limits) +-- detection-limites.tsv (laboratory detection limits)
......
...@@ -24,7 +24,7 @@ A data frame with 74 records and 9 variables: ...@@ -24,7 +24,7 @@ A data frame with 74 records and 9 variables:
\source{ \source{
Many of the water-quality benchmarks were accessed from the Many of the water-quality benchmarks were accessed from the
U.S. Geological Survey Health-Based Screening Levels database, U.S. Geological Survey Health-Based Screening Levels database,
accessed on August 8, 2017, from \url{https://water.usgs.gov/nawqa/HBSL}. accessed on August 8, 2017, from \url{https://water.usgs.gov/water-resources/hbsl/}.
Benchmarks for total Trihalomethanes, Tritium, and Strontium-90 were Benchmarks for total Trihalomethanes, Tritium, and Strontium-90 were
provided by the U.S. Environmental Protection Agency (2015). provided by the U.S. Environmental Protection Agency (2015).
Note that MCL benchmark values reported in millirem per year were Note that MCL benchmark values reported in millirem per year were
...@@ -42,7 +42,7 @@ the U.S. Environmental Protection Agency (USEPA) Maximum Contaminant Levels ...@@ -42,7 +42,7 @@ the U.S. Environmental Protection Agency (USEPA) Maximum Contaminant Levels
Human Health Benchmarks for Pesticides Human Health Benchmarks for Pesticides
(\href{https://iaspub.epa.gov/apex/pesticides/f?p=HHBP:home}{HHBPs}), and (\href{https://iaspub.epa.gov/apex/pesticides/f?p=HHBP:home}{HHBPs}), and
the U.S. Geological Survey (USGS) Health-Based Screening Levels the U.S. Geological Survey (USGS) Health-Based Screening Levels
(\href{https://water.usgs.gov/nawqa/HBSL}{HBSLs}). (\href{https://water.usgs.gov/water-resources/hbsl/}{HBSLs}).
} }
\examples{ \examples{
str(benchmarks) str(benchmarks)
......
...@@ -17,7 +17,7 @@ facilities ...@@ -17,7 +17,7 @@ facilities
} }
\description{ \description{
Federal research facilities at the Federal research facilities at the
Idaho National Laboratory (\href{https://www.inl.gov/}{INL}). Idaho National Laboratory (\href{https://inl.gov/}{INL}).
} }
\examples{ \examples{
inlmisc::PlotMap(facilities, dms.tick = TRUE) inlmisc::PlotMap(facilities, dms.tick = TRUE)
......
...@@ -16,7 +16,7 @@ U.S. Geological Survey ...@@ -16,7 +16,7 @@ U.S. Geological Survey
inl inl
} }
\description{ \description{
Boundary of the Idaho National Laboratory (\href{https://www.inl.gov/}{INL}). Boundary of the Idaho National Laboratory (\href{https://inl.gov/}{INL}).
} }
\examples{ \examples{
inlmisc::PlotMap(inl, dms.tick = TRUE) inlmisc::PlotMap(inl, dms.tick = TRUE)
......
...@@ -11,7 +11,7 @@ A data frame with 74 records and 7 variables: ...@@ -11,7 +11,7 @@ A data frame with 74 records and 7 variables:
\item{\code{parameter_group_nm}}{parameter group name, such as \code{"Radiochemical"}} \item{\code{parameter_group_nm}}{parameter group name, such as \code{"Radiochemical"}}
\item{\code{parameter_nm}}{long parameter name, such as \code{"Strontium-90, water, unfiltered, picocuries per liter"}} \item{\code{parameter_nm}}{long parameter name, such as \code{"Strontium-90, water, unfiltered, picocuries per liter"}}
\item{\code{casrn}}{Chemical Abstracts Service \item{\code{casrn}}{Chemical Abstracts Service
(\href{https://www.cas.org/content/chemical-substances/faqs}{CAS}) registry number, (\href{https://www.cas.org/support/documentation/chemical-substances/faqs}{CAS}) registry number,
such as \code{"10098-97-2"} for Strontium-90} such as \code{"10098-97-2"} for Strontium-90}
\item{\code{srsname}}{Substance Registry Services \item{\code{srsname}}{Substance Registry Services
(\href{https://iaspub.epa.gov/sor_internet/registry/substreg/home/overview/home.do}{SRS}) name, (\href{https://iaspub.epa.gov/sor_internet/registry/substreg/home/overview/home.do}{SRS}) name,
......
...@@ -15,7 +15,7 @@ A RasterStack of the \pkg{raster} package with 2 layers. ...@@ -15,7 +15,7 @@ A RasterStack of the \pkg{raster} package with 2 layers.
See \code{\link{projection}} dataset for coordinate reference system information. See \code{\link{projection}} dataset for coordinate reference system information.
} }
\source{ \source{
The National Map (\href{https://nationalmap.gov/elevation.html}{TNM}) The National Map (\href{https://www.usgs.gov/core-science-systems/national-geospatial-program/national-map}{TNM})
1/3-arc-second DEM (Gesch, 2007; Gesch and others, 2002), accessed on August 4, 2020. 1/3-arc-second DEM (Gesch, 2007; Gesch and others, 2002), accessed on August 4, 2020.
This dataset can be downloaded in a Esri ArcGRID \eqn{\textsuperscript{TM}}{™} format using This dataset can be downloaded in a Esri ArcGRID \eqn{\textsuperscript{TM}}{™} format using
\href{https://viewer.nationalmap.gov/basic/}{TNM Download}. \href{https://viewer.nationalmap.gov/basic/}{TNM Download}.
......
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