README.md 75.5 KB
Newer Older
1
2
# USGS Public Project Explorer

3
 **[ABAM_project / ABAM_package](https://code.usgs.gov/abam/abam_package)**
4
_Updated: 2022-05-18T14:27:50.234Z_
5
 
6
R package ABAM facilitates the workflow for the Annual Brome Adaptive Management (ABAM) decision support tool. The ABAM program is a partnership between the National Park Service and USGS.
7
 ___
8
9
10
11
12
13
14
 **[ARC / deep-learning-with-telemetry-data](https://code.usgs.gov/arc/deep-learning-with-telemetry-data)**
_Updated: 2019-11-13T21:58:18.625Z_
 
Repo for unsupervised clustering of golden eagle telemetry data with deep learning code
 ___
 **[ARC / rasterized-building-footprints](https://code.usgs.gov/arc/rasterized-building-footprints)**
_Updated: 2020-06-23T18:02:08.528Z_
15
16
17
18
19
 ___
 **[ASL / Papers / Ringler / Digitizer Paper](https://code.usgs.gov/asl/papers/ringler/digitizer-paper)**
_Updated: 2022-08-31T21:22:38.089Z_
 
This is code for an SRL paper on digitizers.
20
21
 ___
 **[ASL / Papers / Ringler / GSN Timing](https://code.usgs.gov/asl/papers/ringler/gsn-timing)**
22
_Updated: 2021-05-12T23:18:29.302Z_
23
24
25
26
27
 ___
 **[ASL / Papers / Ringler / Instrument Gallery Code](https://code.usgs.gov/asl/papers/ringler/instrument-gallery-code)**
_Updated: 2021-12-01T15:16:25.802Z_
 
This is code for the instrument failure gallery.  Ringler, A. T., D. Mason, G. Laske, T. Storm, and M. Templeton (2021).  Why do my squiggles look funny? A gallery of compromised seismic signals, Seismological Research letters.
28
29
30
31
32
 ___
 **[ASL / Papers / Ringler / Rayleigh attenuation study](https://code.usgs.gov/asl/papers/ringler/rayleigh-attenuation-study)**
_Updated: 2021-03-11T19:17:16.185Z_
 
Code for Rayleigh wave inversion.
33
34
35
36
37
 ___
 **[ASL / Papers / Ringler / Sensor Rodeo](https://code.usgs.gov/asl/papers/ringler/sensor-rodeo)**
_Updated: 2022-01-13T23:42:33.188Z_
 
Code for Local variations in broadband sensor installations: Orientations, sensitivities, and noise levels, Pure Appl. Geophys.
38
39
40
41
42
 ___
 **[ASL / Papers / Ringler / normal_mode_GSN](https://code.usgs.gov/asl/papers/ringler/normal_mode_gsn)**
_Updated: 2022-03-30T13:10:58.253Z_
 
Normal Modes GSN paper
43
44
 ___
 **[ASL / Papers / dwilson / seismic-network-detection-modeling](https://code.usgs.gov/asl/papers/dwilson/seismic-network-detection-modeling)**
45
_Updated: 2022-01-10T19:27:20.103Z_
46
47
48
49
50
51
52
53
54
55
 ___
 **[ASL / Papers / reanthony / Acoustic-Seismic-Observations](https://code.usgs.gov/asl/papers/reanthony/Acoustic-Seismic-Observations)**
_Updated: 2022-04-15T17:35:55.543Z_
 
Scripts to make figures presented in: "Characteristics, Relationships, and Precision of Direct Acoustic-to-Seismic Coupling Measurements from Local Explosions" which is under consideration for publication at Geophysical Journal International 
 ___
 **[ASL / Papers / reanthony / SARNET_CNN_Film_Chip_Classifier ](https://code.usgs.gov/asl/papers/reanthony/sarnet_cnn_film_chip_classifier)**
_Updated: 2022-04-15T17:37:28.081Z_
 
This code is a convolutional neural network (CNN) that is used to sort World-Wide Standardized Seismographic Network film chips into different classes of "interestingness" based on amplitude variations of the traces recorded on the film chips. 
56
57
58
 ___
 **[ASL / Papers / reanthony / TA-noise-maps-BSSA](https://code.usgs.gov/asl/papers/reanthony/ta-noise-maps-BSSA)**
_Updated: 2021-12-16T22:49:47.252Z_
59
60
 ___
 **[ASL / asl-java-utils](https://code.usgs.gov/asl/asl-java-utils)**
61
_Updated: 2022-09-12T21:01:55.178Z_
62
63
64
65
 
Java code to handle common, shared processing tasks like SEED file loading and power spectra calculation
 ___
 **[Alaska Science Center / Arctic_Shorebird_Population_Model](https://code.usgs.gov/asc/arctic_shorebird_population_model)**
66
_Updated: 2021-01-14T22:46:14.067Z_
67
68
69
70
71
72
73
 ___
 **[Alaska Science Center / Bioinformatics / USGS_ASC_Python_and_Biopython_scripts](https://code.usgs.gov/asc/Bioinformatics/USGS_ASC_Python_and_Biopython_scripts)**
_Updated: 2020-03-04T18:32:43.372Z_
 
U.S. Geological Survey, Alaska Science Center, bioinformatic scripts written in Python and Biopython used to facilitate primer design, database development, and Next Generation Sequencing data processing
 ___
 **[Alaska Science Center / Icemail](https://code.usgs.gov/asc/icemail)**
74
_Updated: 2021-04-29T22:59:46.917Z_
75
76
 
Scripting to support logistics and navigational planning in Alaskan ice bearing waters. Provides information in a manner that is convenient for users aboard offshore vessels and remote communities with limited internet data access.
77
78
 ___
 **[Alaska Science Center / Nest_Survival_Bias_Analysis](https://code.usgs.gov/asc/nest_survival_bias_analysis)**
79
_Updated: 2022-08-18T21:55:49.327Z_
80
81
 
Script to simulate data and apply four estimators of nest success to evaluate bias resulting from changes in daily survival rates with age
82
83
84
85
86
 ___
 **[Alaska Science Center / SBS_Polar_Bear_Dens](https://code.usgs.gov/asc/sbs_polar_bear_dens)**
_Updated: 2022-09-02T18:07:07.388Z_
 
Code for analysis of polar bear maternal den abundance and distribution in the Southern Beaufort Sea (1982-2015).
87
88
 ___
 **[BHS Risk Tool Group / BHSRoCTGUI](https://code.usgs.gov/bhs-risk-tool-group/bhsroctgui)**
89
_Updated: 2021-09-23T15:38:43.029Z_
90
91
92
93
94
 ___
 **[BHS Risk Tool Group / BHSforay](https://code.usgs.gov/bhs-risk-tool-group/bhsforay)**
_Updated: 2021-04-28T23:00:01.670Z_
 ___
 **[BHS Risk Tool Group / BHSkde](https://code.usgs.gov/bhs-risk-tool-group/bhskde)**
95
_Updated: 2022-01-22T23:21:34.110Z_
96
97
 ___
 **[BHS Risk Tool Group / Bighorn Sheep Risk Tool](https://code.usgs.gov/bhs-risk-tool-group/bighorn-sheep-risk-tool)**
98
_Updated: 2022-05-01T00:10:29.747Z_
99
100
 ___
 **[CCH / DSAS](https://code.usgs.gov/cch/dsas)**
101
_Updated: 2022-02-10T19:04:21.639Z_
102
103
104
 
Digital Shoreline Analysis System
 ___
105
 **[California Water Science Center / One Water Hydrologic Flow Model - Legacy / OneWater - Legacy Version](https://code.usgs.gov/cawsc/owhm/onewater)**
106
107
_Updated: 2019-11-08T20:04:11.803Z_
_Tags: Conjunctive Use | Fortran | Integrated Hydrologic Modeling | MF-OWHM | MODFLOW | MODFLOW-OWHM | Numerical Simulation | OneWater_
108
109
110
111
112
113
114
115
 
Legacy MF-OWHM for

Hanson, R.T. and others, 2018, Rio Grande ... U.S Geological Survey Open-File Report 2018–1091, https://doi.org/10.3133/ofr20181091

Superseded repo is at: 

https://code.usgs.gov/modflow/mf-owhm.git
116
117
118
 ___
 **[California Water Science Center / draper](https://code.usgs.gov/cawsc/draper)**
_Updated: 2019-07-29T16:41:20.693Z_
119
120
121
122
123
 ___
 **[Chesapeake Bay Data Management / ChesapeakeBayDataCatalogApplication](https://code.usgs.gov/chesapeake-bay-data-management/ChesapeakeBayDataCatalogApplication)**
_Updated: 2022-07-25T14:34:14.621Z_
 
This code develops an RShiny application to interact with the USGS Chesapeake Bay Theme 4 Data Catalog to assist users in identifying and interacting with datasets used in and across efforts related to the USGS Chesapeake Bay science efforts. 
124
125
 ___
 **[Chesapeake Bay Science / Assessments / OverlapZones_kkrause](https://code.usgs.gov/chesapeake-bay-science/assessments/overlapzones_kkrause)**
126
_Updated: 2021-03-09T15:40:49.330Z_
127
128
129
130
 
Summarize raster layers within overlapping polygons. This project contains a script and files relating to the summarization of continuous and discrete raster data within overlapping zones.
 ___
 **[Columbia River Research Lab - Quantitative Fisheries Ecology Section / Enhanced_Acoustic_Telemetry_Project](https://code.usgs.gov/crrl_qfes/Enhanced_Acoustic_Telemetry_Project)**
131
_Updated: 2022-07-20T16:35:55.738Z_
132
133
134
135
 
Project to house daily simulations from the Delta STARS model.
 ___
 **[Columbia River Research Lab - Quantitative Fisheries Ecology Section / Winter_Run_CJS](https://code.usgs.gov/crrl_qfes/Winter_Run_CJS)**
136
_Updated: 2021-11-26T23:15:17.801Z_
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
 ___
 **[Community for Data Integration / CDI FY16 / evac_dash](https://code.usgs.gov/cdi/cdi-fy16/evac_dash)**
_Updated: 2020-04-10T21:02:55.334Z_
 
Code repository for projects funded by the USGS Community for Data Integration
 ___
 **[Community for Data Integration / CDI FY16 / hazardviz](https://code.usgs.gov/cdi/cdi-fy16/hazardviz)**
_Updated: 2020-04-10T21:18:17.237Z_
 
Code repository for projects funded by the USGS Community for Data Integration
 ___
 **[Community for Data Integration / CDI FY16 / hunting_invasive_species_with_htcondor](https://code.usgs.gov/cdi/cdi-fy16/hunting_invasive_species_with_htcondor)**
_Updated: 2020-04-10T21:19:31.045Z_
 
Code repository for projects funded by the USGS Community for Data Integration
 ___
 **[Community for Data Integration / CDI FY17 / photometadata-webmap-cdi](https://code.usgs.gov/cdi/CDI-FY17/photometadata-webmap-cdi)**
_Updated: 2020-04-10T20:38:31.922Z_
 
Code repository for projects funded by the USGS Community for Data Integration
157
158
159
 ___
 **[Community for Data Integration / CDI FY20 / Jupyter Data Stories](https://code.usgs.gov/cdi/cdi-fy20/jupyter-data-stories)**
_Updated: 2021-01-04T21:18:03.813Z_
160
161
162
 ___
 **[CooperativeResearchUnits / Bayesian Analysis of Line Transect Distance Sampling ](https://code.usgs.gov/cooperativeresearchunits/vegetation-ltds)**
_Updated: 2022-09-12T14:43:49.055Z_
163
164
 ___
 **[CooperativeResearchUnits / Co-occurrence Simulation ](https://code.usgs.gov/cooperativeresearchunits/co-occurrence-simulation)**
165
_Updated: 2022-04-29T18:17:21.964Z_
166
167
168
169
170
 ___
 **[CooperativeResearchUnits / Geoprocessing Layers](https://code.usgs.gov/cooperativeresearchunits/geoprocessing-layers)**
_Updated: 2022-04-07T17:59:05.633Z_
 
The Processing of Geospatial Data for the Habitat Risk Software allows the user to process publicly available geospatial data into the format necessary for inclusion in the Habitat Risk Software (Hanley et al. 2021), which is the software that levera
171
172
 ___
 **[CooperativeResearchUnits / Modeling gopher tortoises population viability](https://code.usgs.gov/cooperativeresearchunits/modeling-gopher-tortoises-population-viability)**
173
_Updated: 2022-05-10T17:53:11.426Z_
174
175
 
The code was developed to support the SSA and listing decision for Gopher Tortoises
176
177
178
 ___
 **[CooperativeResearchUnits / Predicting climate change impacts on poikilotherms using physiologically guided species abundance models](https://code.usgs.gov/cooperativeresearchunits/predicting-climate-change-poikilotherms)**
_Updated: 2022-07-18T17:26:32.402Z_
179
180
 ___
 **[DevOps / Images](https://code.usgs.gov/devops/images)**
181
_Updated: 2022-08-17T18:56:00.549Z_
182
183
184
185
 
This project serves as an image registry for use througout the USGS. Some images
are direct mirrors from Docker Hub and provided for reliable access while on the
DOI network.
186
187
 ___
 **[EH Geospatial CTT / Applications](https://code.usgs.gov/eh-geospatial-ctt/applications)**
188
_Updated: 2022-05-31T00:10:31.759Z_
189
190
 ___
 **[Eastern Ecological Science Center / sars-cov-2-transmission-risk-from-humans-to-bats](https://code.usgs.gov/eastern-ecological-science-center/sars-cov-2-transmission-risk-from-humans-to-bats)**
191
_Updated: 2021-10-22T11:21:47.008Z_
192
193
194
_Tags: COVID-19 | SARS-COV-2 | bats | risk assessment | wildlife disease | zoonotic_
 
Decision-Support Tool to Estimate SARS-CoV-2 Human-to-bat Transmission Risk
195
196
197
198
199
200
 ___
 **[Ecosystems / FRESC / ArcGIS Pro Custom Barcode Creation Tool](https://code.usgs.gov/ecosystems/FRESC/arcgis-pro-custom-barcode-creation-tool)**
_Updated: 2019-02-28T18:51:28.366Z_
 
This tool is being provided free to the public in support of field and laboratory specialists who would like to create custom bar codes in order to better maintain their field and laboratory samples.
This data release contains all of the source code.
201
202
203
204
205
 ___
 **[Ecosystems / FRESC / GIS Clipping and Summarization Toolbox](https://code.usgs.gov/ecosystems/FRESC/gis-clipping-and-summarization-toolbox)**
_Updated: 2022-01-11T18:56:19.727Z_
 
This ArcGIS Pro toolbox assists users to efficiently summarize and compile raster information within discrete units (polygons or points) in an area of interest or to create a frequency raster that counts the number of overlapping polygons.
206
207
208
209
210
 ___
 **[Ecosystems / FRESC / Mercury Condition Index Tool](https://code.usgs.gov/ecosystems/FRESC/mercury-condition-index-tool)**
_Updated: 2022-06-06T22:22:12.822Z_
 
The Mercury Condition Index Tool uses existing data of mercury concentrations in certain animals within national parks to estimate a park level Condition Index (and associated uncertainty) for mercury.
211
212
213
214
215
 ___
 **[Ecosystems / FRESC / cbinom-dpqr-family-of-functions](https://code.usgs.gov/ecosystems/FRESC/cbinom-dpqr_family-of-functions)**
_Updated: 2019-07-30T17:34:41.041Z_
 
This R package provides a standard d/p/q/r suite of functions for a continuous binomial distribution as presented by: Ilienko, Andreii. 2013. 
216
217
218
219
220
 ___
 **[Ecosystems / FRESC / dwp](https://code.usgs.gov/ecosystems/FRESC/dwp)**
_Updated: 2022-01-31T23:24:49.516Z_
 
R package for estimating fraction of bird and bat carcasses lying in the searched area at wind and solar power facilities.
221
222
223
224
225
 ___
 **[Ecosystems / FRESC / sagebrush_hurdle_model](https://code.usgs.gov/ecosystems/FRESC/sagebrush_hurdle_model)**
_Updated: 2019-06-27T16:12:22.705Z_
 ___
 **[Ecosystems / GenEst](https://code.usgs.gov/ecosystems/GenEst)**
226
_Updated: 2021-07-21T19:26:15.255Z_
227
228
 ___
 **[FluEgg / fluegg](https://code.usgs.gov/FluEgg/fluegg)**
229
_Updated: 2022-05-26T15:25:37.255Z_
230
231
232
233
234
 ___
 **[GECSC / CA_BP_features_acmse22](https://code.usgs.gov/gecsc/ca_bp_features_acmse22)**
_Updated: 2022-04-15T20:23:13.136Z_
 
Source code for the paper: Pastorino, J., et al. 2022. Determination of Optimal Set of Spatio-temporal Features for Predicting Burn Probability in the State of California, USA. In 2022 ACMSE'22https://doi.org/10.1145/3476883.3520228
235
236
237
238
239
240
241
 ___
 **[GECSC / Tracking disturbance and inundation to identify wetland loss](https://code.usgs.gov/gecsc/tracking-disturbance-and-inundation-to-identify-wetland-loss)**
_Updated: 2020-06-19T17:14:10.924Z_
 
This project uses Landsat image collections, processed with JavaScript codes in Google Earth Engine, to track annual inundation and disturbance extent. The projects study area extent is the Mid-Atlantic Region, United States.
 ___
 **[GFT / Python GIS Flood Tool](https://code.usgs.gov/gft/python-gis-flood-tool)**
242
_Updated: 2021-07-22T19:24:04.452Z_
243
244
 ___
 **[GMEGSC / ibluff](https://code.usgs.gov/gmegsc/ibluff)**
245
_Updated: 2021-09-07T14:35:21.637Z_
246
247
 ___
 **[Genetics for Western Restoration and Conservation / popmaps](https://code.usgs.gov/GWRC/popmaps)**
248
_Updated: 2022-07-09T00:03:01.733Z_
249
250
 
Population Management using Ancestry Probability Surfaces
251
252
 ___
 **[Great Lakes Science Center / Wetlands / Annual Management Unit Summary Code](https://code.usgs.gov/great-lakes-science-center/wetlands/annual-management-unit-summary-code)**
253
_Updated: 2021-01-22T22:14:51.700Z_
254
255
 
This software summarizes participant data submitted to the Phragmites Adaptive Management Framework into individualized PDF reports that allow participants to track and share their progress in the program.
256
257
258
259
260
 ___
 **[Great Lakes Science Center / Wetlands / Data analysis and figures for Differences in Rhizosphere Microbial Communities Between Native and Non-Native Phragmites australis May Depend on Stand Density](https://code.usgs.gov/great-lakes-science-center/wetlands/Phrag-Rhizosphere-Analysis)**
_Updated: 2021-08-12T15:14:43.850Z_
 
This repository hold the code to reproduce the data analyses and figures found in "Differences in Rhizosphere Microbial Communities Between Native and Non-Native Phragmites australis May Depend on Stand Density" published in Ecology and Evolution.
261
262
263
264
265
 ___
 **[HyMETT / HyMETT](https://code.usgs.gov/hymett/hymett)**
_Updated: 2022-01-13T19:23:22.939Z_
 
HyMETT R package
266
 ___
267
 **[INLPO / ObsNetQW](https://code.usgs.gov/inl/obsnetqw)**
268
_Updated: 2021-07-19T16:52:08.787Z_
269
270
 
Assessment of a water-quality aquifer monitoring network
271
 ___
272
 **[INLPO / inldata](https://code.usgs.gov/inl/inldata)**
273
_Updated: 2022-09-02T15:45:09.481Z_
274
275
 
Collection of datasets for the USGS-INL aquifer monitoring networks
276
 ___
277
 **[INLPO / inlpubs](https://code.usgs.gov/inl/inlpubs)**
278
_Updated: 2022-09-09T18:22:41.730Z_
279
 
280
USGS INL Project Office publications: https://rconnect.usgs.gov/inlpo/inlpubs/
281
282
 ___
 **[ISO Content Specs / Basic Modules](https://code.usgs.gov/iso-content-specs/basic-modules)**
283
_Updated: 2022-05-26T17:39:38.227Z_
284
285
286
287
 
Essential modules for ISO metadata, defining documentation requirements for Basic (all USGS metadata), Geospatial, Lineage, Biological.
 ___
 **[Legleiter, Carl J. / ORByT - Optical River Bathymetry Toolkit](https://code.usgs.gov/cjl/orbyt-optical-river-bathymetry-toolkit)**
288
_Updated: 2022-03-17T14:10:32.021Z_
289
290
 
The Optical River Bathymetry Toolkit, ORByT, is an application to facilitate mapping water depth in river channels from passive optical image data.  ORByT provides an integrated workflow for image processing, depth retrieval, and export of results.
291
292
 ___
 **[MAKB / MapKB](https://code.usgs.gov/makb/MapKB)**
293
_Updated: 2022-06-01T00:10:42.101Z_
294
 
295
This is the proof-of-concept for the Map as a Knowledge Base (MapKB). Dalia Varanka and Lynn Usery created the conceptual design and the software implementation was developed by Jacques Bourquin. 
296
297
 ___
 **[MAKB / MapKB Assets](https://code.usgs.gov/makb/mapkb-assets)**
298
_Updated: 2021-05-13T23:09:04.057Z_
299
300
 ___
 **[MAKB / MapKB Docker Container](https://code.usgs.gov/makb/mapkb-docker-container)**
301
_Updated: 2021-05-14T17:03:51.032Z_
302
 
303
Docker container for MapKB
304
305
 ___
 **[Mississippi Alluvial Plain / gw / Convert infoGW to GWmaster for visGWDB](https://code.usgs.gov/map/gw/infoGW2visGWDB)**
306
_Updated: 2022-07-25T18:12:23.097Z_
307
308
309
_Tags: Benford's law | groundwater | water level_
 
An R groundwater-data processing utility for manipulating, veracity checking, and converting an 'infoGW' object to the 'GWmaster' object for the visGWDB software with demonstration for the Mississippi River Valley alluvial aquifer.
310
311
 ___
 **[Mississippi Alluvial Plain / gw / GW Level Stat Models / covMRVAgen1](https://code.usgs.gov/map/gw/levs/covMRVAgen1)**
312
_Updated: 2022-08-09T21:41:12.358Z_
313
 
314
Generation 1 series of statistical modeling of water levels in the Mississippi River Valley alluvial aquifer, Mississippi River alluvial plain.
315
 ___
316
 **[Mississippi Alluvial Plain / gw / Groundwater informatics](https://code.usgs.gov/map/gw/visGWDBmrva)**
317
_Updated: 2021-03-20T13:33:23.025Z_
318
319
320
_Tags: generalized additive model | groundwater | hydrograph | statistics | support vector machine | water level_
 
The code collection of visGWDB is a framework for groundwater-level informatics. This visGWDBmrva repository is made to be a static demonstration for the Mississippi River Valley alluvial aquifer (MRVA) and support of other derivative products.
321
322
323
 ___
 **[Mississippi Alluvial Plain / maprandomforest](https://code.usgs.gov/map/maprandomforest)**
_Updated: 2021-06-08T18:06:38.808Z_
324
325
326
327
328
 ___
 **[Mississippi Alluvial Plain / wu / aiwum1](https://code.usgs.gov/map/wu/aiwum1)**
_Updated: 2021-03-31T18:47:08.953Z_
 
Aquaculture and Irrigation Water-Use Model (AIWUM) version 1 with demonstration for the Mississippi Alluvial Plain.
329
330
 ___
 **[NPWRC-R / hexgrid](https://code.usgs.gov/npwrc-r/hexgrid)**
331
_Updated: 2021-07-22T17:16:39.281Z_
332
333
334
_Tags: Construction and analysis of hexagonal grids_
 
Package `hexgrid` supports the representation, construction, and analysis of polygons in general and hexagonal grids in particular, with an emphasis on applications in wildlife ecology.
335
336
 ___
 **[NPWRC-R / mort](https://code.usgs.gov/npwrc-r/mort)**
337
_Updated: 2020-10-27T15:00:53.841Z_
338
339
 
R functions and tutorials: Organizing interval data and estimating cause-specific mortality.
340
341
342
343
344
 ___
 **[NWHC software / Applying Simulated Treatments to Bat Populations Experiencing Severe White-nose Syndrome Mortality](https://code.usgs.gov/nwhc-software/simulated-WNS-treatments)**
_Updated: 2022-08-18T14:44:48.880Z_
 
We developed a model allowing for the application of treatment strategies to bat populations at risk of severe mortality from white-nose syndrome.
345
346
 ___
 **[NWHC software / Software for Space matters - host spatial structure and model plague transmission dynamics and pathways](https://code.usgs.gov/nwhc-software/space-matters)**
347
_Updated: 2022-06-21T15:14:55.974Z_
348
349
 
Russell, R.E., 2020, Data and Software for Space matters: host spatial structure and model plague transmission dynamics and pathways: U.S. Geological Survey software release, https://doi.org/10.5066/P97AJ6LY.
350
351
352
353
354
355
 ___
 **[PCMSC / Marfac Machine Vision Camera Interface](https://code.usgs.gov/pcmsc/marfac-flir-camera-interface)**
_Updated: 2021-09-21T21:03:28.470Z_
_Tags: C# | FLIR | GigE | Machine Vision_
 
This project contains the C# software developed to control and acquire imagery from a FLIR GigE machine vision camera. It is built using the FLIR Spinnaker 64bit SDK version 2.4.0.144 and requires the spinview application and associated dll's.
356
357
358
359
360
 ___
 **[PCMSC / dash_doodler](https://code.usgs.gov/pcmsc/dash_doodler)**
_Updated: 2022-02-04T21:47:32.470Z_
 
Doodler--A web application built with plotly/dash for image segmentation with minimal supervision
361
362
 ___
 **[PRISM / prism_engine](https://code.usgs.gov/prism/prism_engine)**
363
_Updated: 2021-02-06T17:18:09.062Z_
364
365
 ___
 **[QRev / QRevPy](https://code.usgs.gov/QRev/QRevPy)**
366
_Updated: 2022-08-26T18:15:56.161Z_
367
368
 
QRev in Python
369
370
 ___
 **[RSQ / RSQcomp](https://code.usgs.gov/rsq/rsqcomp)**
371
_Updated: 2022-04-21T16:20:49.223Z_
372
373
374
375
 
RSQcomp is an R package that calculates remotely sensed discharge based on the altimdswe relationship. 
 ___
 **[RSQ / altimDSWE](https://code.usgs.gov/rsq/altimdswe)**
376
_Updated: 2022-03-31T13:25:28.832Z_
377
378
 
altimDSWE is an R package that relates altimetry heights to dynamic surface water extent for the purposes of remote sensing large ungaged rivers. 
379
380
381
382
383
 ___
 **[SPCMSC / Cliff Feature Delineation Tool and Baseline Builder](https://code.usgs.gov/spcmsc/cliff-feature-delineation-tool-and-baseline-builder)**
_Updated: 2020-08-19T14:30:16.647Z_
 
The Cliff Feature Delineation Tool scans digital elevation models (DEM) to delineate features on seacliffs like the cliff top, midline, toe, and convexities/concavities on the cliff face, outputting linear features as polylines and point shapefiles. 
384
385
386
 ___
 **[SPCMSC / Keys Carbonate Budgets](https://code.usgs.gov/spcmsc/keys_carbonate_budgets)**
_Updated: 2022-06-07T13:16:30.952Z_
387
388
389
 ___
 **[SPCMSC / Multi-grid Analysis of Point Stability](https://code.usgs.gov/spcmsc/multi-grid-analysis-of-point-stability)**
_Updated: 2021-05-26T17:44:40.931Z_
390
391
 ___
 **[SPCMSC / Seafloor Elevation Change Analysis Tool](https://code.usgs.gov/spcmsc/volume-and-elevation-calculation-software)**
392
_Updated: 2021-05-20T21:14:15.318Z_
393
394
 
Seafloor Elevation Change Analysis Tool (SECAT) is a script that computes both elevation change and volume change between two sets of data covering the same area at different points in time. 
395
396
397
 ___
 **[SPCMSC / Subaerial Barrier Sediment Partitioning Model](https://code.usgs.gov/spcmsc/subaerial-barrier-sediment-partitioning-model)**
_Updated: 2020-10-30T17:59:03.459Z_
398
399
 ___
 **[Science Analytics and Synthesis / BioScience / drip / drip-dash-app](https://code.usgs.gov/sas/bioscience/drip/drip-dash-app)**
400
_Updated: 2022-06-07T21:09:46.218Z_
401
402
 
A tool for exploring trends about dam removal science and querying published scientific studies that evaluate environmental response to dam removals.
403
404
 ___
 **[Science Analytics and Synthesis / BioScience / drip / pydrip](https://code.usgs.gov/sas/bioscience/drip/pydrip)**
405
_Updated: 2022-03-24T18:09:42.761Z_
406
407
 
This package handles retrieval and preparation of the source data for the Dam Removal Information Portal API. 
408
409
 ___
 **[Science Analytics and Synthesis / BioScience / wildlife-wrangler](https://code.usgs.gov/sas/bioscience/wildlife-wrangler)**
410
_Updated: 2022-09-10T00:10:10.207Z_
411
412
 ___
 **[Science Analytics and Synthesis / BioScience / xstrm](https://code.usgs.gov/sas/bioscience/xstrm)**
413
_Updated: 2021-12-15T16:26:14.059Z_
414
 
415
A USGS software package and associated command line tool that captures universal methods for stream network summarization.  
416
417
 ___
 **[Science Analytics and Synthesis / BioScience / xstrm_local](https://code.usgs.gov/sas/bioscience/xstrm_local)**
418
_Updated: 2022-08-03T16:55:24.301Z_
419
420
421
_Tags: landscape ecology_
 
This Python package is intended to assist with summarization of landscape information to stream watershed drainages (local summaries). Methods are built in a generalized way and are intended to support efforts for any stream network having polygon based drainage watersheds. The output of these methods can be used to calculate stream network summaries using [xstrm](https://doi.org/10.5066/P9P8P7Z0).
422
423
 ___
 **[Science Analytics and Synthesis / Science Data Management / Model catalog / intake](https://code.usgs.gov/sas/sdm/model-catalog/intake)**
424
_Updated: 2022-09-17T04:22:30.104Z_
425
426
427
_Tags: metadata_
 
Model metadata that supports the USGS Model Catalog
428
429
430
 ___
 **[Science Analytics and Synthesis / Science Data Management / publink](https://code.usgs.gov/sas/sdm/publink)**
_Updated: 2020-08-21T21:11:55.141Z_
431
432
 ___
 **[SolVES / SolVES 4.0](https://code.usgs.gov/solves/solves-4.0)**
433
_Updated: 2022-05-25T12:27:52.697Z_
434
435
 
Source code for SolVES 4.0 developed in python as a QGIS plugin.
436
437
 ___
 **[Southwest Gravity Program / GSadjust](https://code.usgs.gov/sgp/gsadjust)**
438
_Updated: 2021-03-11T00:02:48.944Z_
439
440
 
GUI for processing gravity-survey data
441
442
 ___
 **[Southwest Gravity Program / Gravity Data Spreadsheet](https://code.usgs.gov/sgp/gravity-data-spreadsheet)**
443
_Updated: 2021-02-24T14:48:26.913Z_
444
445
 
Excel Workbooks for collecting relative-gravity data 
446
447
 ___
 **[StreamStats / Data Preparation / CPG / FCPGtools](https://code.usgs.gov/StreamStats/data-preparation/cpg/FCPGtools)**
448
_Updated: 2022-09-16T20:50:32.663Z_
449
450
451
452
 
Tools to create flow-conditioned parameter grids (FCPGs) from flow direction grids and input parameter datasets.  Documentation: https://usgs.github.io/water-fcpg-tools/
 ___
 **[StreamStats / Data Preparation / DataPrepTools](https://code.usgs.gov/StreamStats/data-preparation/datapreptools)**
453
_Updated: 2022-09-14T15:22:10.978Z_
454
455
456
457
458
459
460
 
Tools for preparing terrain data for inclusion in USGS StreamStats. Documentation: https://usgs.github.io/water-datapreptools/
 ___
 **[StreamStats / Flood Frequency / PFFREX](https://code.usgs.gov/StreamStats/flood-frequency/pffrex)**
_Updated: 2022-08-09T23:18:50.813Z_
 
Peak Flow Frequency R EXtensions
461
462
463
464
465
466
467
 ___
 **[UMESC / PESTPP_sensitivity_analysis](https://code.usgs.gov/umesc/pestpp_sensitivity_analysis)**
_Updated: 2020-01-30T21:12:58.599Z_
 
An example of using the PESTPP software for sensitivity analysis on an ecological model. 
 ___
 **[UMESC / fishStan](https://code.usgs.gov/umesc/fishStan)**
468
_Updated: 2020-10-16T13:21:39.256Z_
469
470
471
472
 
A collection of fisheries models coded in Stan.
 ___
 **[UMESC / introduction_to_r](https://code.usgs.gov/umesc/introduction_to_r)**
473
_Updated: 2020-11-16T14:39:27.245Z_
474
475
476
477
 
Introduction to R tutorial. 
 ___
 **[UMESC / occupancy_correlated_error](https://code.usgs.gov/umesc/occupancy_correlated_error)**
478
_Updated: 2020-11-16T14:31:56.155Z_
479
480
 
This project presents an occupancy model with correlated error structure. 
481
482
 ___
 **[UMESC / quant-ecology / Carp Demographic Rates](https://code.usgs.gov/umesc/quant-ecology/carp_demographic_rates)**
483
_Updated: 2022-02-28T21:31:34.388Z_
484
485
 
Fits hierarchical models to carp data.
486
487
 ___
 **[UMESC / quant-ecology / SEICarP Application](https://code.usgs.gov/umesc/quant-ecology/seicarp-application)**
488
_Updated: 2022-09-08T20:48:41.550Z_
489
490
491
492
 
This is repo contains an application of the Spatially Explicit Invasive Carp (SEICarP) model.
 ___
 **[UMESC / quant-ecology / SEICarP_IL](https://code.usgs.gov/umesc/quant-ecology/seicarp_il)**
493
_Updated: 2022-09-13T16:44:16.540Z_
494
495
 
Spatially Explicit Invasive Carp Population (SEICarP) for the Illinois River
496
497
 ___
 **[UMESC / quant-ecology / YY-male life history](https://code.usgs.gov/umesc/quant-ecology/yy-male-life-history)**
498
_Updated: 2022-06-29T15:20:07.944Z_
499
500
 ___
 **[UMESC / quant-ecology / climatchR](https://code.usgs.gov/umesc/quant-ecology/climatchr)**
501
_Updated: 2022-09-16T17:34:32.384Z_
502
503
 
An R implementation of Climatch (https://climatch.cp1.agriculture.gov.au/).
504
505
 ___
 **[UMESC / quant-ecology / climatchr_htcondor](https://code.usgs.gov/umesc/quant-ecology/climatchr_htcondor)**
506
_Updated: 2022-01-10T15:50:59.755Z_
507
508
 ___
 **[UMESC / quant-ecology / ecotoxicology_hierarhcial_data](https://code.usgs.gov/umesc/quant-ecology/ecotoxicology_hierarhcial_data)**
509
_Updated: 2022-03-29T18:08:50.207Z_
510
511
 ___
 **[UMESC / quant-ecology / fishStan](https://code.usgs.gov/umesc/quant-ecology/fishstan)**
512
_Updated: 2022-06-09T16:54:54.974Z_
513
514
 
Version 2+ of the fishStan package.
515
516
 ___
 **[UMESC / quant-ecology / metaipm](https://code.usgs.gov/umesc/quant-ecology/metaipm)**
517
_Updated: 2022-07-07T19:26:55.039Z_
518
519
 
A Meta-population Integral Projection Model
520
521
522
 ___
 **[UMESC / quant-ecology / metaipm-example](https://code.usgs.gov/umesc/quant-ecology/metaipm-example)**
_Updated: 2022-07-11T14:13:19.505Z_
523
524
 ___
 **[UMESC / quant-ecology / occStan](https://code.usgs.gov/umesc/quant-ecology/occstan)**
525
_Updated: 2022-09-08T17:46:01.378Z_
526
527
 
Occupancy modeling with Stan
528
529
530
 ___
 **[UMESC / quant-ecology / occStan_hm](https://code.usgs.gov/umesc/quant-ecology/occstan_hm)**
_Updated: 2022-09-06T15:05:38.275Z_
531
532
533
 ___
 **[UMESC / quant-ecology / stats_code / sudan_black](https://code.usgs.gov/umesc/quant-ecology/stats_code/sudan_black)**
_Updated: 2022-03-25T13:43:12.681Z_
534
535
 ___
 **[UMESC / wthogmartin / BatTool](https://code.usgs.gov/umesc/wthogmartin/BatTool)**
536
_Updated: 2022-09-14T15:51:53.015Z_
537
538
 
Bat Population Projection Using Demographic Modeling with Shiny Application
539
540
 ___
 **[USGS Fortran / Batteries Included Fortran Library](https://code.usgs.gov/fortran/bif)**
541
_Updated: 2022-04-25T20:52:27.574Z_
542
543
544
545
546
547
 
Batteries Included Fortran Library (BiF-lib)

BiF-lib assists in file I/O, common operations present in other languages, and include data types that mimic python data types (list and dict).

[Go to Readme](https://code.usgs.gov/fortran/bif#-)
548
549
 ___
 **[USGS MODFLOW / MODFLOW One-Water Hydrologic Flow Model](https://code.usgs.gov/modflow/mf-owhm)**
550
_Updated: 2022-04-14T03:00:59.678Z_
551
_Tags: Conjunctive Use | Fortran | Integrated Hydrologic Modeling | MF-OWHM | MODFLOW | MODFLOW-OWHM | Numerical Simulation | OWHM | OneWater_
552
 
553
MODFLOW OWHM Official Download and Source Repository
554

555
**For download links and background info go to the [README](https://code.usgs.gov/modflow/mf-owhm#-)**
556

557
or scroll down until you see the MF-OWHM banner
558
559
 ___
 **[VSC / Publications / Flinders_A / H2-seafloor-estimator](https://code.usgs.gov/vsc/publications/flinders_a/H2-seafloor-estimator)**
560
_Updated: 2020-09-16T20:17:46.006Z_
561
562
563
_Tags: oceanography | planetary science_
 
Supplemental Materials for;
564
Sauvage, J. F., et al. The contribution of water radiolysis to marine sedimentary life, Nature Communications (submitted) (2020).
565
566
 ___
 **[VSC / Publications / gTOOLS](https://code.usgs.gov/vsc/publications/gtools)**
567
_Updated: 2022-08-19T18:49:44.179Z_
568
569
 ___
 **[VSC / Swarm](https://code.usgs.gov/vsc/swarm)**
570
_Updated: 2021-03-25T23:51:47.105Z_
571
572
 
A Java application designed to display and analyze seismic waveforms in real-time. See http://volcanoes.usgs.gov/software/swarm.
573
574
575
576
577
578
579
580
581
582
 ___
 **[VTCFWRU / AMModels](https://code.usgs.gov/vtcfwru/ammodels)**
_Updated: 2019-12-13T22:42:10.316Z_
 
The R package AMModels and supporting documentation. Please read the ReadMe file below to get started.

:point_left:  Look for the Wiki link in the left menu.

 ___
 **[VTCFWRU / AMMonitor](https://code.usgs.gov/vtcfwru/ammonitor)**
583
_Updated: 2022-09-16T20:14:00.463Z_
584
585
586
587
588
589
590
_Tags: The R package AMMonitor._
 
The R package AMMonitor and supporting documentation.  Please read the ReadMe file below to get started.


 ___
 **[VTCFWRU / AMPop](https://code.usgs.gov/vtcfwru/ampop)**
591
_Updated: 2021-05-06T15:28:04.166Z_
592
593
594
595
596
597
 
The R package AMPop and supporting documentation.  Please read the ReadMe file below to get started.


:point_left:  Look for the Wiki link in the left menu.

598
599
 ___
 **[VTCFWRU / shinymgr](https://code.usgs.gov/vtcfwru/shinymgr)**
600
_Updated: 2022-09-14T17:49:16.794Z_
601
602
 
A framework for building, managing, and stitching shiny modules into reproducible workflows 
603
604
 ___
 **[WERC / Dixon_Field_Station / Coates-lab / SMaRT](https://code.usgs.gov/werc/dixon-field-station/coates-lab/smart)**
605
_Updated: 2022-03-24T21:51:44.595Z_
606
607
 
Science-based Management of Ravens Tool
608
609
 ___
 **[WERC / Dixon_Field_Station / Coates-lab / raventools](https://code.usgs.gov/werc/dixon-field-station/coates-lab/raventools)**
610
_Updated: 2022-06-15T20:48:40.128Z_
611
612
 
spatial data and functions for the Science-based Management of Ravens (SMaRT) application
613
614
 ___
 **[WERC / Dixon_Field_Station / Coates-lab / rsgis](https://code.usgs.gov/werc/dixon-field-station/coates-lab/rsgis)**
615
_Updated: 2022-06-15T21:19:41.098Z_
616
617
 
Package containing spatial data for sage-grouse tools
618
619
 ___
 **[WERC / Dixon_Field_Station / Halstead-lab / dixie-valley-toad-dynamic-occupancy](https://code.usgs.gov/werc/dixon-field-station/halstead-lab/dixie-valley-toad-dynamic-occupancy)**
620
_Updated: 2022-08-29T13:08:12.543Z_
621
622
 
Code to fit a dynamic multi-state occupancy model to survey data for Dixie Valley Toads (Anaxyrus williamsi)
623
624
 ___
 **[WERC / Dixon_Field_Station / Halstead-lab / san-francisco-gartersnake-cmr](https://code.usgs.gov/werc/dixon-field-station/halstead-lab/san-francisco-gartersnake-cmr)**
625
_Updated: 2022-07-08T21:49:51.038Z_
626
627
 
Code to analyze Capture-Mark-Recapture data of San Francisco gartersnakes (Thamnophis sirtalis tetrataenia) by fitting growth and survival models.
628
629
 ___
 **[WERC / henderson-field-station / mojave-seed-menus](https://code.usgs.gov/werc/henderson-field-station/mojave-seed-menus)**
630
_Updated: 2022-04-14T22:42:44.362Z_
631
632
 
Mojave Seed Menus is a Shiny application that creates suitable seed lists for restoration sites in the Mojave Desert. 
633
634
635
636
637
 ___
 **[WERC / redwood_field_station / poscrptR](https://code.usgs.gov/werc/redwood_field_station/poscrptr)**
_Updated: 2021-01-28T16:44:49.023Z_
 
R package that exports a shiny app which predicts post-fire conifer regeneration.
638
639
 ___
 **[WIM / WQ_HUC_reports](https://code.usgs.gov/WiM/WQ_HUC_reports)**
640
_Updated: 2022-09-15T21:08:54.811Z_
641
642
_Tags: R | water quality_
 
643
Generate water-quality reports for wildlife refuge boundaries, or user-defined HUC boundaries. See https://rconnect.usgs.gov/wqReport/ for more information.
644
645
646
647
648
649
650
 ___
 **[Water / COGG / Salinity / fruitvale](https://code.usgs.gov/water/cogg/salinity/fruitvale)**
_Updated: 2018-09-27T22:08:51.950Z_
 
Groundwater TDS model for the Fruitvale and Rosedale Ranch oil fields, Kern County, California.
 ___
 **[Water / EDEN](https://code.usgs.gov/water/eden)**
651
_Updated: 2020-12-30T19:10:37.477Z_
652
653
 ___
 **[Water / EGRET](https://code.usgs.gov/water/EGRET)**
654
_Updated: 2022-09-14T12:49:11.388Z_
655
656
_Tags: rstats_
 
657
658
An R-package for the analysis of long-term changes in water quality and streamflow, including the water-quality method Weighted Regressions on Time, Discharge, and Season (WRTDS):
https://rconnect.usgs.gov/EGRET/
659
660
 ___
 **[Water / EGRETci](https://code.usgs.gov/water/EGRETci)**
661
_Updated: 2022-09-15T21:34:53.150Z_
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
 
A bootstrap method for estimating uncertainty of water quality trends
 ___
 **[Water / ESPD / HGB / 1DTempPro](https://code.usgs.gov/water/espd/hgb/1dtemppro)**
_Updated: 2020-05-21T17:59:47.077Z_
 
USGS 1DTempPro is a computer program for analysis of vertical one-dimensional (1D) temperature profiles
 ___
 **[Water / ESPD / HGB / DTSGUI](https://code.usgs.gov/water/espd/hgb/DTSGUI)**
_Updated: 2019-12-10T14:16:16.532Z_
 ___
 **[Water / ESPD / HGB / FLASH](https://code.usgs.gov/water/espd/hgb/flash)**
_Updated: 2020-05-21T18:02:53.874Z_
 
FLASH: A Computer Program for Flow-Log Analysis of Single Holes
 ___
 **[Water / ESPD / HGB / FLASH-R](https://code.usgs.gov/water/espd/hgb/flash-r)**
_Updated: 2020-04-03T17:32:47.006Z_
 
FLASH-R (Flow-Log Analysis of Single Holes) is an R app for the analysis of borehole vertical flow logs to estimate fracture (or layer) transmissivities and far-field hydraulic heads.
 ___
 **[Water / ESPD / HGB / FRGT](https://code.usgs.gov/water/espd/hgb/frgt)**
_Updated: 2020-05-21T18:01:53.241Z_
 
The Fractured Rock Geophysical Toolbox Method Selection Tool (FRGT-MST) is an Excel-based tool for identification of geophysical methods most likely to be appropriate for project goals and site conditions.
687
688
 ___
 **[Water / ESPD / HGB / GW-SW-MST](https://code.usgs.gov/water/espd/hgb/gw-sw-mst)**
689
_Updated: 2022-06-28T03:38:25.709Z_
690
691
 
The Groundwater - Surface Water Method Selection Tool (GW-SW MST) is designed to assist project scientists and engineers in selecting data collection methods that (1) satisfy study goals, and (2) are feasible for application at a given site.
692
693
694
695
696
697
698
699
700
701
702
703
 ___
 **[Water / ESPD / HGB / MoisturEC](https://code.usgs.gov/water/espd/hgb/moisturec)**
_Updated: 2020-05-21T18:03:18.040Z_
 
MoisturEC: R-based GUI to combine electrical conductivity data with point moisture measurements
 ___
 **[Water / ESPD / HGB / SEER](https://code.usgs.gov/water/espd/hgb/seer)**
_Updated: 2020-05-21T18:01:27.521Z_
 
Scenario Evaluator for Electrical Resistivity (SEER) is an Excel-based decision support tool to assess the likely outcome of using 2D electrical resistivity imaging for site characterization and remediation monitoring.
 ___
 **[Water / Elapsed Time  for Casing Storage Elimination](https://code.usgs.gov/water/elapsed-time-for-casing-storage-elimination)**
704
_Updated: 2020-08-04T18:50:27.560Z_
705
706
707
708
709
710
711
 
An open source spreadsheet for Estimation of the Ellapsed Time for Casing Storage Effects on Drawdown to be Eliminated for Single-Well Pumping Test Analysis
 ___
 **[Water / Equivalent Fresh Groundwater Head for Potentiometric Maps](https://code.usgs.gov/water/equivalent-fresh-groundwater-head-for-potentiometric-maps)**
_Updated: 2019-04-10T16:05:14.198Z_
 
Open source spreadsheet for general use for calculation of equivalent freshwater altitude at wells where the water quality data indicate the well is tapping brackish <10,000 ppm chloride to use for potentiometric maps.
712
713
714
 ___
 **[Water / Hydrologic Toolbox](https://code.usgs.gov/water/hydrologic-toolbox)**
_Updated: 2022-06-02T13:20:04.178Z_
715
716
 ___
 **[Water / Linesink-maker](https://code.usgs.gov/water/Linesink-maker)**
717
_Updated: 2022-07-28T00:10:45.406Z_
718
719
720
 ___
 **[Water / NWTOPT](https://code.usgs.gov/water/NWTOPT)**
_Updated: 2022-05-27T00:16:47.820Z_
721
722
 ___
 **[Water / Oklahoma-Texas Water Science Center / InFRM FDST Toolbox](https://code.usgs.gov/water/OTWSC/infrm-fdst-toolbox)**
723
_Updated: 2022-07-05T19:04:57.518Z_
724
725
 
Geoprocessing Toolbox for the InFRM Flood Decision Support Toolbox
726
727
 ___
 **[Water / PAT](https://code.usgs.gov/water/pat)**
728
_Updated: 2020-11-19T18:19:32.039Z_
729
730
731
_Tags: groundwater sampling | in-well flow | pumping | well chemistry_
 
Purge Analyzer Tool - For computation of in-well time of travel of groundwater under pumping conditions
732
733
 ___
 **[Water / PHREEQ / PHREEQ-N-AMDTreat+REYs](https://code.usgs.gov/water/phreeq/phreeq-n-amdtreat-reys)**
734
_Updated: 2022-09-13T20:17:05.311Z_
735
736
737
_Tags: acid mine drainage | rare-earth elements | water quality_
 
The interactive PHREEQ-N-AMDTreat+REYs water-quality modeling tools simulate changes in the concentrations of rare-earth elements plus yttrium (REYs) and associated solutes in response to variations in the solution composition, the composition and availability of hydrous-metal-oxide (HMeO) sorbent, and the potential for solids to precipitate. 
738
739
 ___
 **[Water / PHREEQ-N-AMDTreat](https://code.usgs.gov/water/phreeq-n-amdtreat)**
740
_Updated: 2022-09-06T16:06:46.684Z_
741
742
 
The executable PHREEQ-N-AMDTreat code uses PHREEQC with a customized user-interface developed with Visual Studio 2019 to simulate water-quality effects resulting from treatment of acid mine drainage. 
743
744
745
746
747
748
 ___
 **[Water / PHREEQ-N-Titration-PO4-Adsorption](https://code.usgs.gov/water/phreeq-n-titration-po4-adsorption)**
_Updated: 2021-11-19T22:00:14.130Z_
_Tags: PHREEQC | adsorption | hydrous aluminum oxide | hydrous ferric oxide | hydrous manganese oxide | pH | phosphate | precipitation_
 
Two complementary water-quality modeling tools (CausticTitration_PO4mg.exe, CausticTitration_PO4moles.exe) simulate equilibrium processes that may attenuate dissolved concentrations of phosphate plus associated solutes.
749
750
 ___
 **[Water / PSLoadEsT](https://code.usgs.gov/water/psloadest)**
751
_Updated: 2021-05-12T15:26:30.056Z_
752
753
754
755
 
A user-friendly interface for generating reproducible load calculations for point source dischargers while managing common data challenges including duplicates, incompatible input tables, and missing nutrient concentration or effluent flow data.
 ___
 **[Water / RESTORE / Geospatial layers in R](https://code.usgs.gov/water/restore/aregis)**
756
_Updated: 2021-04-02T19:03:55.851Z_
757
_Tags: Gulf Coast Ecosystem Restoration Council | gis | spatial analysis in R_
758
759
760
761
 
Geospatial layers transformed to R language spatial objects for RESTORE project scripting convenience.
 ___
 **[Water / RESTORE / fdclmrpplo](https://code.usgs.gov/water/restore/fdclmrpplo)**
762
_Updated: 2021-07-15T17:43:09.187Z_
763
_Tags: L-moments | Lmoments | Tobit | censored data | flow-duration curve | generalized additive model | huc12 | level-12 hydrologic unit code | streamflow_
764
765
 
Source code for estimation of L-moments and percent no-flow conditions for decadal flow-duration curves and estimation at level-12 hydrologic unit codes along with other statistical computations
766
767
 ___
 **[Water / RESTORE / scNIDaregis](https://code.usgs.gov/water/restore/scNIDaregis)**
768
_Updated: 2022-01-27T17:53:55.397Z_
769
770
771
_Tags: Arkansas | Colorado | Kansas | Louisiana | Missouri | National Inventory of Dams | New Mexico | Oklahoma | Texas | reservoir storage | water resources_
 
scNIDaregis—Geospatial Processing of Selected Components of the National Inventory of Dams with a State-Level Aggregation Scheme and Post-Processing Features for Basin-Specific Tabulation
772
773
 ___
 **[Water / RESTORE / syntheticdv2lff](https://code.usgs.gov/water/restore/syntheticdv2lff)**
774
_Updated: 2022-07-14T20:36:36.635Z_
775
_Tags: Pearson type III | QppQ | hydrograph | log Pearson type III | low flow | low flow frequency | unit values_
776
777
 
RESTORE/syntheticdv2lff—Low-streamflow (low-flow) frequency (LFF) estimation from synthetic daily mean streamflow with bias correction estimated at level-12 hydrologic unit code (HUC12) pour points in the southern and southeastern United States
778
779
 ___
 **[Water / SCALP](https://code.usgs.gov/water/SCALP)**
780
_Updated: 2022-07-20T16:15:02.351Z_
781
782
 ___
 **[Water / SFRmaker](https://code.usgs.gov/water/SFRmaker)**
783
_Updated: 2022-07-28T00:10:45.799Z_
784
785
786
787
788
789
790
 ___
 **[Water / Sed_SAT](https://code.usgs.gov/water/sed_sat)**
_Updated: 2020-03-09T13:19:36.019Z_
 
Sed_SAT is a user-friendly statistical model that guides the user through the necessary steps in order to quantify the relative contributions of sediment sources in a given watershed. 
 ___
 **[Water / ToxMixtures](https://code.usgs.gov/water/toxmixtures)**
791
_Updated: 2022-04-15T18:19:21.441Z_
792
793
794
795
796
797
798
799
_Tags: rstats_
 
R-package to explore chemical mixtures on toxicity
 ___
 **[Water / Transit-Loss](https://code.usgs.gov/water/Transit-Loss)**
_Updated: 2018-12-19T17:47:09.498Z_
 
Modernization of a FORTRAN77 transit-loss accounting program developed by the USGS to estimate net reusable flows in Fountain and Monument Creeks in El Paso and Pueblo Counties, Colorado to FORTRAN 2003 standard.  
800
801
 ___
 **[Water / WREG](https://code.usgs.gov/water/WREG)**
802
_Updated: 2022-08-30T15:52:34.523Z_
803
804
 ___
 **[Water / WRTPS](https://code.usgs.gov/water/WRTPS)**
805
_Updated: 2022-09-12T19:16:15.802Z_
806
807
808
809
810
 ___
 **[Water / WSC / bulk_hvsR](https://code.usgs.gov/water/wsc/bulk_hvsR)**
_Updated: 2022-01-13T16:38:36.630Z_
 
bulk_hvsR.r is an R-script to automate processing and plotting passive seismic HVSR (Horizontal to Vertical Spectral Ratio) datasets.
811
812
 ___
 **[Water / WSC / softwSIR20205086](https://code.usgs.gov/water/wsc/softwSIR20205086)**
813
_Updated: 2021-03-22T15:39:28.419Z_
814
815
816
_Tags: Texas | bankfull | ecological region | ecoregion | hydraulic properties | streamflow_
 
Companion software to USGS SIR 2020–5086.
817
818
 ___
 **[Water / climb8](https://code.usgs.gov/water/climb8)**
819
_Updated: 2022-06-30T00:10:17.798Z_
820
821
822
 
An R Package For Querying and Joining Climate or Meteorological Data
With USGS Hydrologic Data
823
824
825
826
827
828
829
 ___
 **[Water / compHydros](https://code.usgs.gov/water/comphydros)**
_Updated: 2020-03-10T20:11:40.898Z_
 
Composite hydrographs for groundwater principle aquifers.
 ___
 **[Water / dataRetrieval](https://code.usgs.gov/water/dataRetrieval)**
830
_Updated: 2022-08-31T12:29:29.193Z_
831
 
832
833
This R package is designed to obtain USGS or EPA water quality sample data, streamflow data, and metadata directly from web services. For more information, see: https://rconnect.usgs.gov/dataRetrieval/

834
835
 ___
 **[Water / facet](https://code.usgs.gov/water/facet)**
836
_Updated: 2021-07-08T20:28:32.596Z_
837
838
839
840
841
842
843
844
 
Floodplain and Channel Evaluation Tool

 ___
 **[Water / intersectr](https://code.usgs.gov/water/intersectr)**
_Updated: 2019-03-05T23:06:24.184Z_
 ___
 **[Water / ncdfgeom](https://code.usgs.gov/water/ncdfgeom)**
845
_Updated: 2022-08-02T01:37:12.337Z_
846
 
847
https://usgs-r.github.io/ncdfgeom/ -- https://doi.org/10.5066/P93VYA7U
848
849
 ___
 **[Water / nhdplusTools](https://code.usgs.gov/water/nhdplusTools)**
850
_Updated: 2022-08-08T21:35:19.954Z_
851
852
853
854
 
For the latest development activities or to make contributions, please see: https://github.com/usgs-r/nhdplusTools
 ___
 **[Water / nwm_subset](https://code.usgs.gov/water/nwm_subset)**
855
_Updated: 2022-05-03T14:15:38.686Z_
856
857
 
Some scripts to subset NWM streamflow files. Primary contributions to: https://code.usgs.gov/water/nwm_subset
858
859
860
861
862
 ___
 **[Water / pleasant-lake-flopy-example](https://code.usgs.gov/water/pleasant-lake-flopy-example)**
_Updated: 2022-09-07T15:57:11.098Z_
 
Repository for the worked example in the 2022 Groundwater Technology Spotlight on Flopy.
863
864
 ___
 **[Water / pyGSFLOW ](https://code.usgs.gov/water/pyGSFLOW)**
865
_Updated: 2022-05-27T19:58:11.838Z_
866
867
 ___
 **[Water / sbtools](https://code.usgs.gov/water/sbtools)**
868
_Updated: 2022-08-02T01:25:41.855Z_
869
870
 ___
 **[Water / stats / HASP](https://code.usgs.gov/water/stats/hasp)**
871
_Updated: 2022-09-06T19:13:18.972Z_
872
 
873
Hydrologic AnalySis Package: HASP can retrieve groundwater level and groundwater quality data, aggregate these data, plot them, and generate basic statistics. See https://rconnect.usgs.gov/HASP_docs/ for more information.
874
875
 ___
 **[Water / stats / Multiple Grubbs-Beck Test](https://code.usgs.gov/water/stats/MGBT)**
876
_Updated: 2021-09-15T18:06:03.631Z_
877
878
879
880
881
_Tags: Bulletin 17C | EMA | discharge qualification codes | flood frequency | low outliers | peak streamflow_
 
Compute the multiple Grubbs-Beck low-outlier test on positively distributed data and a few useful utilities for non-interpretive U.S. Geological Survey annual peak-streamflow data processing.
 ___
 **[Water / stats / RSPARROW](https://code.usgs.gov/water/stats/rsparrow)**
882
_Updated: 2021-06-15T16:01:53.662Z_
883
884
 ___
 **[Water / toxEval](https://code.usgs.gov/water/toxEval)**
885
_Updated: 2022-08-26T12:21:51.440Z_
886
887
888
_Tags: rstats_
 
Initial code for studying ToxCast data in relation to measured concentrations.
889
890
 ___
 **[Water / trajPipeFlow](https://code.usgs.gov/water/trajPipeFlow)**
891
_Updated: 2021-07-05T14:56:17.743Z_
892
893
894
_Tags: horizontal discharging pipe | trajectory flow method | vertical discharging pipe | weir_
 
Functions to compute discharge from the trajectory of horizontal and vertical flowing pipes using U.S. Bureau of Reclamation methods.
895
896
 ___
 **[Water / utc2nwislocal](https://code.usgs.gov/water/utc2nwislocal)**
897
_Updated: 2022-07-12T14:09:16.275Z_
898
899
900
_Tags: Coordinated Universal Time | NWIS | National Water Information System | UTC | time zone_
 
A light-weight, dependency-free R package to compute UTC offsets from U.S. Geological Survey National Water Information System (NWIS) time-zone codes. NWIS time-zone codes are not recognized in base R that uses the Olson Names scheme.
901
902
 ___
 **[Water Mission Area / Internet of Water / waterdataui](https://code.usgs.gov/wma/iow/waterdataui)**
903
_Updated: 2022-09-17T09:20:55.779Z_
904
905
 
Water Data For the Nation Site Pages
906
907
 ___
 **[Water Mission Area / Internet of Water / wdfn-viz](https://code.usgs.gov/wma/iow/wdfn-viz)**
908
_Updated: 2022-09-17T09:25:02.631Z_
909
910
 
Node installable package to provide visual identification for Water Data for the Nation pages
911
912
913
 ___
 **[Water Mission Area / Observing Systems Division / CAP](https://code.usgs.gov/wma/osd/cap)**
_Updated: 2022-04-12T13:40:13.287Z_
914
 ___
915
916
 **[Water Mission Area / nhgf / Geo-Data-Portal / Geoknife](https://code.usgs.gov/wma/nhgf/geo-data-portal/geoknife)**
_Updated: 2022-09-02T01:11:41.917Z_
917
918
 ___
 **[Water Mission Area / nhgf / PyGDP](https://code.usgs.gov/wma/nhgf/pyGDP)**
919
_Updated: 2022-02-01T21:37:23.159Z_
920
921
 ___
 **[Water Mission Area / nhgf / ToolsTeam / gdptools](https://code.usgs.gov/wma/nhgf/toolsteam/gdptools)**
922
_Updated: 2022-09-08T22:52:56.114Z_
923
924
 
Tools for GeoData Portal polygon-to-polygon intersections.  
925
926
 ___
 **[Water Mission Area / nhgf / ToolsTeam / nldi-flowtools](https://code.usgs.gov/wma/nhgf/toolsteam/nldi-flowtools)**
927
_Updated: 2022-08-04T16:24:05.350Z_
928
929
 ___
 **[Water Mission Area / nhgf / ToolsTeam / nldi-xstool](https://code.usgs.gov/wma/nhgf/toolsteam/nldi-xstool)**
930
_Updated: 2022-09-10T16:25:35.823Z_
931
932
 ___
 **[Water Mission Area / nhgf / api-process-demo](https://code.usgs.gov/wma/nhgf/api-process-demo)**
933
_Updated: 2022-04-26T18:18:28.012Z_
934
935
 
OGC-Processes API Webinar Demo notebook
936
937
 ___
 **[Water Mission Area / nhgf / fluvial-particle](https://code.usgs.gov/wma/nhgf/fluvparticle)**
938
_Updated: 2022-06-20T21:22:42.286Z_
939
940
 
Lagrangian particle-tracking for fluvial environments
941
942
 ___
 **[Water Mission Area / nhgf / mainstems](https://code.usgs.gov/wma/nhgf/mainstems)**
943
_Updated: 2022-07-25T18:24:20.360Z_
944
945
 ___
 **[Water Mission Area / nhgf / pygeoapi](https://code.usgs.gov/wma/nhgf/pygeoapi)**
946
_Updated: 2022-09-13T13:22:20.857Z_
947
948
 ___
 **[Water Mission Area / nhgf / pygeoapi-plugin-cookiecutter](https://code.usgs.gov/wma/nhgf/pygeoapi-plugin-cookiecutter)**
949
_Updated: 2022-06-21T21:51:29.536Z_
950
951
 
Cookiecutter project for creating new pygeoapi-plugins.
952
953
 ___
 **[Water Mission Area / nhgf / reference-hydrofabric](https://code.usgs.gov/wma/nhgf/reference-hydrofabric)**
954
_Updated: 2022-09-15T19:35:44.022Z_
955
956
 
Workflow and code for development of the National Reference Hydrologic Geospatial Fabric (hydrofabric)
957
958
 ___
 **[WaveLab / WaveLab](https://code.usgs.gov/wavelab/wavelab)**
959
_Updated: 2022-08-25T21:46:24.100Z_
960
961
962
963
964
 ___
 **[Wetland and Aquatic Research Center / eDNAOccupancy](https://code.usgs.gov/wetland-and-aquatic-research-center/ednaoccupancy)**
_Updated: 2020-06-23T17:21:41.233Z_
 ___
 **[Wildlife Telemetry Toolkit / telemetry code and collaborations](https://code.usgs.gov/wildlife-telemetry-toolkit/telemetry-code-and-collaborations)**
965
_Updated: 2020-08-26T19:24:56.618Z_
966
967
968
969
 
Provisional code for use by project collaborators and to further development.
 ___
 **[cmgp / bi-transect-extractor](https://code.usgs.gov/cmgp/bi-transect-extractor)**
970
_Updated: 2021-10-13T21:26:32.336Z_
971
972
 ___
 **[cmgp / squid5-software](https://code.usgs.gov/cmgp/squid5-software)**
973
_Updated: 2021-10-13T22:05:59.013Z_
974
975
 ___
 **[coawstmodel / COAWST](https://code.usgs.gov/coawstmodel/COAWST)**
976
_Updated: 2022-02-22T20:17:52.777Z_
977
978
979
980
981
 
Coupled-Ocean-Atmosphere-Wave Sediment Transport Modeling System src code
 ___
 **[espa / bulk-downloader](https://code.usgs.gov/espa/bulk-downloader)**
_Updated: 2020-05-15T14:23:36.725Z_
982
983
984
 ___
 **[espa / espa-notebooks](https://code.usgs.gov/espa/espa-notebooks)**
_Updated: 2021-06-02T14:43:14.992Z_
985
986
 ___
 **[espa / landsat-qa-arcgis-toolbox](https://code.usgs.gov/espa/landsat-qa-arcgis-toolbox)**
987
_Updated: 2021-04-28T19:46:51.997Z_
988
989
 
The Landsat QA ArcGIS Toolbox contains functionality to classify and/or extract bit-packed values from QA bands, which enhance the applications of interpretation, mapping, and applying QA values to Landsat data products.
990
991
 ___
 **[fort / BiblioSearch](https://code.usgs.gov/fort/bibliosearch)**
992
_Updated: 2022-06-13T17:43:02.186Z_
993
994
 
Software to search, clean, and compile literature citations from Web of Science, Scopus, USGS Pubs Warehouse, and ScienceBase.
995
996
 ___
 **[fort / NABat / ecosystems-nabat-acoustic-ml](https://code.usgs.gov/fort/nabat/nabat-ml)**
997
_Updated: 2022-08-15T14:57:05.320Z_
998
999
 ___
 **[fort / NABat / nabatr](https://code.usgs.gov/fort/nabat/nabatr)**
1000
_Updated: 2022-03-08T16:27:42.787Z_
For faster browsing, not all history is shown. View entire blame