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# USGS Public Project Explorer

 **[ARC / deep-learning-with-telemetry-data](https://code.usgs.gov/arc/deep-learning-with-telemetry-data)**
_Updated: 2019-11-13T21:58:18.625Z_
 
Repo for unsupervised clustering of golden eagle telemetry data with deep learning code
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 **[ARC / rasterized-building-footprints](https://code.usgs.gov/arc/rasterized-building-footprints)**
_Updated: 2020-06-23T18:02:08.528Z_
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 **[ASL / Papers / Ringler / GSN Timing](https://code.usgs.gov/asl/papers/ringler/gsn-timing)**
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_Updated: 2021-05-12T23:18:29.302Z_
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 **[ASL / Papers / Ringler / Rayleigh attenuation study](https://code.usgs.gov/asl/papers/ringler/rayleigh-attenuation-study)**
_Updated: 2021-03-11T19:17:16.185Z_
 
Code for Rayleigh wave inversion.
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 **[ASL / Papers / dwilson / seismic-network-detection-modeling](https://code.usgs.gov/asl/papers/dwilson/seismic-network-detection-modeling)**
_Updated: 2021-05-25T15:40:31.326Z_
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 **[ASL / asl-java-utils](https://code.usgs.gov/asl/asl-java-utils)**
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_Updated: 2021-05-21T21:50:28.364Z_
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Java code to handle common, shared processing tasks like SEED file loading and power spectra calculation
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 **[Alaska Science Center / Arctic_Shorebird_Population_Model](https://code.usgs.gov/asc/arctic_shorebird_population_model)**
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_Updated: 2021-01-14T22:46:14.067Z_
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 **[Alaska Science Center / Bioinformatics / USGS_ASC_Python_and_Biopython_scripts](https://code.usgs.gov/asc/Bioinformatics/USGS_ASC_Python_and_Biopython_scripts)**
_Updated: 2020-03-04T18:32:43.372Z_
 
U.S. Geological Survey, Alaska Science Center, bioinformatic scripts written in Python and Biopython used to facilitate primer design, database development, and Next Generation Sequencing data processing
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 **[Alaska Science Center / Icemail](https://code.usgs.gov/asc/icemail)**
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_Updated: 2021-04-29T22:59:46.917Z_
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Scripting to support logistics and navigational planning in Alaskan ice bearing waters. Provides information in a manner that is convenient for users aboard offshore vessels and remote communities with limited internet data access.
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 **[Alaska Science Center / Nest_Survival_Bias_Analysis](https://code.usgs.gov/asc/nest_survival_bias_analysis)**
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_Updated: 2021-04-07T01:04:04.838Z_
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Script to simulate data and apply four estimators of nest success to evaluate bias resulting from changes in daily survival rates with age
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 **[BHS Risk Tool Group / BHSRoCTGUI](https://code.usgs.gov/bhs-risk-tool-group/bhsroctgui)**
_Updated: 2021-04-28T23:15:44.032Z_
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 **[BHS Risk Tool Group / BHSforay](https://code.usgs.gov/bhs-risk-tool-group/bhsforay)**
_Updated: 2021-04-28T23:00:01.670Z_
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 **[BHS Risk Tool Group / BHSkde](https://code.usgs.gov/bhs-risk-tool-group/bhskde)**
_Updated: 2021-04-28T23:09:19.005Z_
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 **[BHS Risk Tool Group / Bighorn Sheep Risk Tool](https://code.usgs.gov/bhs-risk-tool-group/bighorn-sheep-risk-tool)**
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_Updated: 2021-05-06T14:29:41.456Z_
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 **[CCH / DSAS](https://code.usgs.gov/cch/dsas)**
_Updated: 2020-06-01T15:46:40.796Z_
 
Digital Shoreline Analysis System
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 **[California Water Science Center / One Water Hydrologic Flow Model - Legacy / OneWater - Legacy Version](https://code.usgs.gov/cawsc/owhm/onewater)**
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_Updated: 2019-11-08T20:04:11.803Z_
_Tags: Conjunctive Use | Fortran | Integrated Hydrologic Modeling | MF-OWHM | MODFLOW | MODFLOW-OWHM | Numerical Simulation | OneWater_
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Legacy MF-OWHM for

Hanson, R.T. and others, 2018, Rio Grande ... U.S Geological Survey Open-File Report 2018–1091, https://doi.org/10.3133/ofr20181091

Superseded repo is at: 

https://code.usgs.gov/modflow/mf-owhm.git
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 **[California Water Science Center / draper](https://code.usgs.gov/cawsc/draper)**
_Updated: 2019-07-29T16:41:20.693Z_
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 **[Chesapeake Bay Science / Assessments / OverlapZones_kkrause](https://code.usgs.gov/chesapeake-bay-science/assessments/overlapzones_kkrause)**
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_Updated: 2021-03-09T15:40:49.330Z_
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Summarize raster layers within overlapping polygons. This project contains a script and files relating to the summarization of continuous and discrete raster data within overlapping zones.
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 **[Columbia River Research Lab - Quantitative Fisheries Ecology Section / Enhanced_Acoustic_Telemetry_Project](https://code.usgs.gov/crrl_qfes/Enhanced_Acoustic_Telemetry_Project)**
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_Updated: 2021-06-08T20:43:01.227Z_
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Project to house daily simulations from the Delta STARS model.
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 **[Columbia River Research Lab - Quantitative Fisheries Ecology Section / Winter_Run_CJS](https://code.usgs.gov/crrl_qfes/Winter_Run_CJS)**
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_Updated: 2020-10-28T23:52:50.603Z_
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 **[Community for Data Integration / CDI FY16 / evac_dash](https://code.usgs.gov/cdi/cdi-fy16/evac_dash)**
_Updated: 2020-04-10T21:02:55.334Z_
 
Code repository for projects funded by the USGS Community for Data Integration
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 **[Community for Data Integration / CDI FY16 / hazardviz](https://code.usgs.gov/cdi/cdi-fy16/hazardviz)**
_Updated: 2020-04-10T21:18:17.237Z_
 
Code repository for projects funded by the USGS Community for Data Integration
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 **[Community for Data Integration / CDI FY16 / hunting_invasive_species_with_htcondor](https://code.usgs.gov/cdi/cdi-fy16/hunting_invasive_species_with_htcondor)**
_Updated: 2020-04-10T21:19:31.045Z_
 
Code repository for projects funded by the USGS Community for Data Integration
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 **[Community for Data Integration / CDI FY17 / photometadata-webmap-cdi](https://code.usgs.gov/cdi/CDI-FY17/photometadata-webmap-cdi)**
_Updated: 2020-04-10T20:38:31.922Z_
 
Code repository for projects funded by the USGS Community for Data Integration
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 **[Community for Data Integration / CDI FY20 / Jupyter Data Stories](https://code.usgs.gov/cdi/cdi-fy20/jupyter-data-stories)**
_Updated: 2021-01-04T21:18:03.813Z_
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 **[Ecosystems / FRESC / ArcGIS Pro Custom Barcode Creation Tool](https://code.usgs.gov/ecosystems/FRESC/arcgis-pro-custom-barcode-creation-tool)**
_Updated: 2019-02-28T18:51:28.366Z_
 
This tool is being provided free to the public in support of field and laboratory specialists who would like to create custom bar codes in order to better maintain their field and laboratory samples.
This data release contains all of the source code.
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 **[Ecosystems / FRESC / cbinom-dpqr-family-of-functions](https://code.usgs.gov/ecosystems/FRESC/cbinom-dpqr_family-of-functions)**
_Updated: 2019-07-30T17:34:41.041Z_
 
This R package provides a standard d/p/q/r suite of functions for a continuous binomial distribution as presented by: Ilienko, Andreii. 2013. 
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 **[Ecosystems / FRESC / sagebrush_hurdle_model](https://code.usgs.gov/ecosystems/FRESC/sagebrush_hurdle_model)**
_Updated: 2019-06-27T16:12:22.705Z_
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 **[Ecosystems / GenEst](https://code.usgs.gov/ecosystems/GenEst)**
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_Updated: 2020-09-10T23:58:23.807Z_
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 **[FluEgg / fluegg](https://code.usgs.gov/FluEgg/fluegg)**
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_Updated: 2021-06-01T18:04:34.701Z_
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 **[GECSC / Tracking disturbance and inundation to identify wetland loss](https://code.usgs.gov/gecsc/tracking-disturbance-and-inundation-to-identify-wetland-loss)**
_Updated: 2020-06-19T17:14:10.924Z_
 
This project uses Landsat image collections, processed with JavaScript codes in Google Earth Engine, to track annual inundation and disturbance extent. The projects study area extent is the Mid-Atlantic Region, United States.
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 **[GFT / Python GIS Flood Tool](https://code.usgs.gov/gft/python-gis-flood-tool)**
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_Updated: 2021-04-05T23:17:00.204Z_
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 **[GMEGSC / ibluff](https://code.usgs.gov/gmegsc/ibluff)**
_Updated: 2021-04-08T12:35:44.411Z_
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 **[Great Lakes Science Center / Wetlands / Annual Management Unit Summary Code](https://code.usgs.gov/great-lakes-science-center/wetlands/annual-management-unit-summary-code)**
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_Updated: 2021-01-22T22:14:51.700Z_
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This software summarizes participant data submitted to the Phragmites Adaptive Management Framework into individualized PDF reports that allow participants to track and share their progress in the program.
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 **[INL / Inldata](https://code.usgs.gov/inl/inldata)**
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_Updated: 2020-09-24T19:34:44.547Z_
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Collection of datasets for the USGS-INL aquifer monitoring networks
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 **[ISO Content Specs / Basic Modules](https://code.usgs.gov/iso-content-specs/basic-modules)**
_Updated: 2020-01-10T02:02:16.490Z_
 
Essential modules for ISO metadata, defining documentation requirements for Basic (all USGS metadata), Geospatial, Lineage, Biological.
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 **[Legleiter, Carl J. / ORByT - Optical River Bathymetry Toolkit](https://code.usgs.gov/cjl/orbyt-optical-river-bathymetry-toolkit)**
_Updated: 2020-06-11T19:15:32.058Z_
 
The Optical River Bathymetry Toolkit, ORByT, is an application to facilitate mapping water depth in river channels from passive optical image data.  ORByT provides an integrated workflow for image processing, depth retrieval, and export of results.
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 **[MAKB / MapKB](https://code.usgs.gov/makb/MapKB)**
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_Updated: 2021-05-14T19:33:37.309Z_
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This is the proof-of-concept for the Map as a Knowledge Base which was designed by Lynn Usery and Dalia Varanka.
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 **[MAKB / MapKB Assets](https://code.usgs.gov/makb/mapkb-assets)**
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_Updated: 2021-05-13T23:09:04.057Z_
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 **[MAKB / MapKB Docker Container](https://code.usgs.gov/makb/mapkb-docker-container)**
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_Updated: 2021-05-14T17:03:51.032Z_
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Working on building a Docker container
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 **[Mississippi Alluvial Plain / gw / Convert infoGW to GWmaster for visGWDB](https://code.usgs.gov/map/gw/infoGW2visGWDB)**
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_Updated: 2021-03-23T00:11:18.150Z_
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_Tags: Benford's law | groundwater | water level_
 
An R groundwater-data processing utility for manipulating, veracity checking, and converting an 'infoGW' object to the 'GWmaster' object for the visGWDB software with demonstration for the Mississippi River Valley alluvial aquifer.
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 **[Mississippi Alluvial Plain / gw / Groundwater informatics](https://code.usgs.gov/map/gw/visGWDBmrva)**
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_Updated: 2021-03-20T13:33:23.025Z_
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_Tags: generalized additive model | groundwater | hydrograph | statistics | support vector machine | water level_
 
The code collection of visGWDB is a framework for groundwater-level informatics. This visGWDBmrva repository is made to be a static demonstration for the Mississippi River Valley alluvial aquifer (MRVA) and support of other derivative products.
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 **[Mississippi Alluvial Plain / maprandomforest](https://code.usgs.gov/map/maprandomforest)**
_Updated: 2021-06-08T18:06:38.808Z_
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 **[Mississippi Alluvial Plain / wu / aiwum1](https://code.usgs.gov/map/wu/aiwum1)**
_Updated: 2021-03-31T18:47:08.953Z_
 
Aquaculture and Irrigation Water-Use Model (AIWUM) version 1 with demonstration for the Mississippi Alluvial Plain.
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 **[NPWRC-R / hexgrid](https://code.usgs.gov/npwrc-r/hexgrid)**
_Updated: 2021-04-29T16:57:36.413Z_
_Tags: Construction and analysis of hexagonal grids_
 
Package `hexgrid` supports the representation, construction, and analysis of polygons in general and hexagonal grids in particular, with an emphasis on applications in wildlife ecology.
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 **[NPWRC-R / mort](https://code.usgs.gov/npwrc-r/mort)**
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_Updated: 2020-10-27T15:00:53.841Z_
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R functions and tutorials: Organizing interval data and estimating cause-specific mortality.
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 **[NWHC software / Software for Space matters - host spatial structure and model plague transmission dynamics and pathways](https://code.usgs.gov/nwhc-software/space-matters)**
_Updated: 2021-01-26T19:51:53.481Z_
 
Russell, R.E., 2020, Data and Software for Space matters: host spatial structure and model plague transmission dynamics and pathways: U.S. Geological Survey software release, https://doi.org/10.5066/P97AJ6LY.
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 **[PRISM / prism_engine](https://code.usgs.gov/prism/prism_engine)**
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_Updated: 2021-02-06T17:18:09.062Z_
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 **[QRev / QRevPy](https://code.usgs.gov/QRev/QRevPy)**
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_Updated: 2021-06-03T12:48:56.062Z_
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QRev in Python
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 **[SPCMSC / Cliff Feature Delineation Tool and Baseline Builder](https://code.usgs.gov/spcmsc/cliff-feature-delineation-tool-and-baseline-builder)**
_Updated: 2020-08-19T14:30:16.647Z_
 
The Cliff Feature Delineation Tool scans digital elevation models (DEM) to delineate features on seacliffs like the cliff top, midline, toe, and convexities/concavities on the cliff face, outputting linear features as polylines and point shapefiles. 
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 **[SPCMSC / Multi-grid Analysis of Point Stability](https://code.usgs.gov/spcmsc/multi-grid-analysis-of-point-stability)**
_Updated: 2021-05-26T17:44:40.931Z_
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 **[SPCMSC / Seafloor Elevation Change Analysis Tool](https://code.usgs.gov/spcmsc/volume-and-elevation-calculation-software)**
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_Updated: 2021-05-20T21:14:15.318Z_
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Seafloor Elevation Change Analysis Tool (SECAT) is a script that computes both elevation change and volume change between two sets of data covering the same area at different points in time. 
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 **[SPCMSC / Subaerial Barrier Sediment Partitioning Model](https://code.usgs.gov/spcmsc/subaerial-barrier-sediment-partitioning-model)**
_Updated: 2020-10-30T17:59:03.459Z_
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 **[Science Analytics and Synthesis / BioScience / xstrm](https://code.usgs.gov/sas/bioscience/xstrm)**
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_Updated: 2021-06-03T19:42:38.533Z_
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A USGS software package and associated command line tool that captures universal methods for stream network summarization.  
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 **[Science Analytics and Synthesis / Science Data Management / publink](https://code.usgs.gov/sas/sdm/publink)**
_Updated: 2020-08-21T21:11:55.141Z_
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 **[SolVES / SolVES 4.0](https://code.usgs.gov/solves/solves-4.0)**
_Updated: 2020-08-28T15:05:47.243Z_
 
Source code for SolVES 4.0 developed in python as a QGIS plugin.
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 **[Southwest Gravity Program / GSadjust](https://code.usgs.gov/sgp/gsadjust)**
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_Updated: 2021-03-11T00:02:48.944Z_
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GUI for processing gravity-survey data
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 **[Southwest Gravity Program / Gravity Data Spreadsheet](https://code.usgs.gov/sgp/gravity-data-spreadsheet)**
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_Updated: 2021-02-24T14:48:26.913Z_
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Excel Workbooks for collecting relative-gravity data 
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 **[StreamStats / DataPrepTools](https://code.usgs.gov/StreamStats/datapreptools)**
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_Updated: 2021-04-14T02:49:36.491Z_
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Tools for preparing terrain data for inclusion in USGS StreamStats. Documentation: https://usgs.github.io/water-datapreptools/
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 **[StreamStats / FCPGtools](https://code.usgs.gov/StreamStats/FCPGtools)**
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_Updated: 2021-05-28T14:07:22.182Z_
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Tools to create flow-conditioned parameter grids (FCPGs) from flow direction grids and input parameter datasets.  Documentation: https://usgs.github.io/water-fcpg-tools/
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 **[UMESC / PESTPP_sensitivity_analysis](https://code.usgs.gov/umesc/pestpp_sensitivity_analysis)**
_Updated: 2020-01-30T21:12:58.599Z_
 
An example of using the PESTPP software for sensitivity analysis on an ecological model. 
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 **[UMESC / fishStan](https://code.usgs.gov/umesc/fishStan)**
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_Updated: 2020-10-16T13:21:39.256Z_
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A collection of fisheries models coded in Stan.
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 **[UMESC / introduction_to_r](https://code.usgs.gov/umesc/introduction_to_r)**
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_Updated: 2020-11-16T14:39:27.245Z_
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Introduction to R tutorial. 
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 **[UMESC / occupancy_correlated_error](https://code.usgs.gov/umesc/occupancy_correlated_error)**
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_Updated: 2020-11-16T14:31:56.155Z_
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This project presents an occupancy model with correlated error structure. 
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 **[UMESC / quant-ecology / Carp Demographic Rates](https://code.usgs.gov/umesc/quant-ecology/carp_demographic_rates)**
_Updated: 2021-04-30T15:41:12.766Z_
 
Fits hierarchical models to carp data.
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 **[UMESC / quant-ecology / fishStan](https://code.usgs.gov/umesc/quant-ecology/fishstan)**
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_Updated: 2021-04-29T14:06:05.304Z_
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Version 2+ of the fishStan package.
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 **[UMESC / quant-ecology / metaipm](https://code.usgs.gov/umesc/quant-ecology/metaipm)**
_Updated: 2021-06-09T14:29:27.323Z_
 
A Meta-population Integral Projection Model
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 **[USGS Fortran / Batteries Included Fortran Library](https://code.usgs.gov/fortran/bif)**
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_Updated: 2021-05-03T23:02:05.387Z_
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Batteries Included Fortran Library (BiF-lib)

BiF-lib assists in file I/O, common operations present in other languages, and include data types that mimic python data types (list and dict).

[Go to Readme](https://code.usgs.gov/fortran/bif#-)
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 **[USGS MODFLOW / MODFLOW One-Water Hydrologic Flow Model](https://code.usgs.gov/modflow/mf-owhm)**
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_Updated: 2021-06-05T05:33:16.057Z_
_Tags: Conjunctive Use | Fortran | Integrated Hydrologic Modeling | MF-OWHM | MODFLOW | MODFLOW-OWHM | Numerical Simulation | OWHM | OneWater_
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Official MF-OWHM Software Page for Conjunctive Use and Integrated Hydrologic Flow Modeling
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**View the README.md at the bottom of this page**

for downloads and background info
[(or click here)](https://code.usgs.gov/modflow/mf-owhm#-)
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 **[VSC / Publications / Flinders_A / H2-seafloor-estimator](https://code.usgs.gov/vsc/publications/flinders_a/H2-seafloor-estimator)**
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_Updated: 2020-09-16T20:17:46.006Z_
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_Tags: oceanography | planetary science_
 
Supplemental Materials for;
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Sauvage, J. F., et al. The contribution of water radiolysis to marine sedimentary life, Nature Communications (submitted) (2020).
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 **[VSC / Publications / gTOOLS](https://code.usgs.gov/vsc/publications/gtools)**
_Updated: 2021-04-29T03:07:22.429Z_
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 **[VSC / Swarm](https://code.usgs.gov/vsc/swarm)**
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_Updated: 2021-03-25T23:51:47.105Z_
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A Java application designed to display and analyze seismic waveforms in real-time. See http://volcanoes.usgs.gov/software/swarm.
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 **[VTCFWRU / AMModels](https://code.usgs.gov/vtcfwru/ammodels)**
_Updated: 2019-12-13T22:42:10.316Z_
 
The R package AMModels and supporting documentation. Please read the ReadMe file below to get started.

:point_left:  Look for the Wiki link in the left menu.

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 **[VTCFWRU / AMMonitor](https://code.usgs.gov/vtcfwru/ammonitor)**
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_Updated: 2021-01-04T21:56:06.142Z_
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_Tags: The R package AMMonitor._
 
The R package AMMonitor and supporting documentation.  Please read the ReadMe file below to get started.


:point_left:  Look for the Wiki link in the left menu.

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 **[VTCFWRU / AMPop](https://code.usgs.gov/vtcfwru/ampop)**
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_Updated: 2021-05-06T15:28:04.166Z_
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The R package AMPop and supporting documentation.  Please read the ReadMe file below to get started.


:point_left:  Look for the Wiki link in the left menu.

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 **[WERC / redwood_field_station / poscrptR](https://code.usgs.gov/werc/redwood_field_station/poscrptr)**
_Updated: 2021-01-28T16:44:49.023Z_
 
R package that exports a shiny app which predicts post-fire conifer regeneration.
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 **[WIM / WQ_HUC_reports](https://code.usgs.gov/WiM/WQ_HUC_reports)**
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_Updated: 2021-06-08T21:41:33.453Z_
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 **[Water / COGG / Salinity / fruitvale](https://code.usgs.gov/water/cogg/salinity/fruitvale)**
_Updated: 2018-09-27T22:08:51.950Z_
 
Groundwater TDS model for the Fruitvale and Rosedale Ranch oil fields, Kern County, California.
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 **[Water / EDEN](https://code.usgs.gov/water/eden)**
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_Updated: 2020-12-30T19:10:37.477Z_
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 **[Water / EGRET](https://code.usgs.gov/water/EGRET)**
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_Updated: 2021-05-31T21:25:30.523Z_
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_Tags: rstats_
 
An R-package for the analysis of long-term changes in water quality and streamflow, including the water-quality method Weighted Regressions on Time, Discharge, and Season (WRTDS)
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 **[Water / EGRETci](https://code.usgs.gov/water/EGRETci)**
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_Updated: 2021-04-13T15:10:43.918Z_
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A bootstrap method for estimating uncertainty of water quality trends
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 **[Water / ESPD / HGB / 1DTempPro](https://code.usgs.gov/water/espd/hgb/1dtemppro)**
_Updated: 2020-05-21T17:59:47.077Z_
 
USGS 1DTempPro is a computer program for analysis of vertical one-dimensional (1D) temperature profiles
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 **[Water / ESPD / HGB / DTSGUI](https://code.usgs.gov/water/espd/hgb/DTSGUI)**
_Updated: 2019-12-10T14:16:16.532Z_
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 **[Water / ESPD / HGB / FLASH](https://code.usgs.gov/water/espd/hgb/flash)**
_Updated: 2020-05-21T18:02:53.874Z_
 
FLASH: A Computer Program for Flow-Log Analysis of Single Holes
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 **[Water / ESPD / HGB / FLASH-R](https://code.usgs.gov/water/espd/hgb/flash-r)**
_Updated: 2020-04-03T17:32:47.006Z_
 
FLASH-R (Flow-Log Analysis of Single Holes) is an R app for the analysis of borehole vertical flow logs to estimate fracture (or layer) transmissivities and far-field hydraulic heads.
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 **[Water / ESPD / HGB / FRGT](https://code.usgs.gov/water/espd/hgb/frgt)**
_Updated: 2020-05-21T18:01:53.241Z_
 
The Fractured Rock Geophysical Toolbox Method Selection Tool (FRGT-MST) is an Excel-based tool for identification of geophysical methods most likely to be appropriate for project goals and site conditions.
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 **[Water / ESPD / HGB / MoisturEC](https://code.usgs.gov/water/espd/hgb/moisturec)**
_Updated: 2020-05-21T18:03:18.040Z_
 
MoisturEC: R-based GUI to combine electrical conductivity data with point moisture measurements
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 **[Water / ESPD / HGB / SEER](https://code.usgs.gov/water/espd/hgb/seer)**
_Updated: 2020-05-21T18:01:27.521Z_
 
Scenario Evaluator for Electrical Resistivity (SEER) is an Excel-based decision support tool to assess the likely outcome of using 2D electrical resistivity imaging for site characterization and remediation monitoring.
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 **[Water / Elapsed Time  for Casing Storage Elimination](https://code.usgs.gov/water/elapsed-time-for-casing-storage-elimination)**
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_Updated: 2020-08-04T18:50:27.560Z_
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An open source spreadsheet for Estimation of the Ellapsed Time for Casing Storage Effects on Drawdown to be Eliminated for Single-Well Pumping Test Analysis
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 **[Water / Equivalent Fresh Groundwater Head for Potentiometric Maps](https://code.usgs.gov/water/equivalent-fresh-groundwater-head-for-potentiometric-maps)**
_Updated: 2019-04-10T16:05:14.198Z_
 
Open source spreadsheet for general use for calculation of equivalent freshwater altitude at wells where the water quality data indicate the well is tapping brackish <10,000 ppm chloride to use for potentiometric maps.
436 437 438
 ___
 **[Water / Linesink-maker](https://code.usgs.gov/water/Linesink-maker)**
_Updated: 2021-04-06T19:32:31.502Z_
439 440
 ___
 **[Water / PAT](https://code.usgs.gov/water/pat)**
441
_Updated: 2020-11-19T18:19:32.039Z_
442 443 444
_Tags: groundwater sampling | in-well flow | pumping | well chemistry_
 
Purge Analyzer Tool - For computation of in-well time of travel of groundwater under pumping conditions
445 446
 ___
 **[Water / PHREEQ-N-AMDTreat](https://code.usgs.gov/water/phreeq-n-amdtreat)**
447
_Updated: 2021-03-04T17:09:55.167Z_
448 449
 
The executable PHREEQ-N-AMDTreat code uses PHREEQC with a customized user-interface developed with Visual Studio 2019 to simulate water-quality effects resulting from treatment of acid mine drainage. 
450 451
 ___
 **[Water / PSLoadEsT](https://code.usgs.gov/water/psloadest)**
452
_Updated: 2021-05-12T15:26:30.056Z_
453 454 455 456
 
A user-friendly interface for generating reproducible load calculations for point source dischargers while managing common data challenges including duplicates, incompatible input tables, and missing nutrient concentration or effluent flow data.
 ___
 **[Water / RESTORE / Geospatial layers in R](https://code.usgs.gov/water/restore/aregis)**
457
_Updated: 2021-04-02T19:03:55.851Z_
458 459 460 461 462
_Tags: GIS | Gulf Coast Ecosystem Restoration Council | spatial analysis in R_
 
Geospatial layers transformed to R language spatial objects for RESTORE project scripting convenience.
 ___
 **[Water / RESTORE / fdclmrpplo](https://code.usgs.gov/water/restore/fdclmrpplo)**
463
_Updated: 2021-03-23T00:15:08.228Z_
464 465 466
_Tags: HUC12 | L-moments | Lmoments | Tobit | censored data | flow-duration curve | generalized additive model | huc12 | level-12 hydrologic unit code | streamflow_
 
Source code for estimation of L-moments and percent no-flow conditions for decadal flow-duration curves and estimation at level-12 hydrologic unit codes along with other statistical computations
467 468 469 470 471 472
 ___
 **[Water / RESTORE / scNIDaregis](https://code.usgs.gov/water/restore/scNIDaregis)**
_Updated: 2021-05-25T15:03:15.349Z_
_Tags: Arkansas | Colorado | Kansas | Louisiana | Missouri | National Inventory of Dams | New Mexico | Oklahoma | Texas | reservoir storage | water resources_
 
scNIDaregis—Geospatial Processing of Selected Components of the National Inventory of Dams with a State-Level Aggregation Scheme and Post-Processing Features for Basin-Specific Tabulation
473 474 475
 ___
 **[Water / SFRmaker](https://code.usgs.gov/water/SFRmaker)**
_Updated: 2021-04-06T19:22:09.449Z_
476 477 478 479 480 481 482
 ___
 **[Water / Sed_SAT](https://code.usgs.gov/water/sed_sat)**
_Updated: 2020-03-09T13:19:36.019Z_
 
Sed_SAT is a user-friendly statistical model that guides the user through the necessary steps in order to quantify the relative contributions of sediment sources in a given watershed. 
 ___
 **[Water / ToxMixtures](https://code.usgs.gov/water/toxmixtures)**
483
_Updated: 2021-02-01T17:59:06.232Z_
484 485 486 487 488 489 490 491
_Tags: rstats_
 
R-package to explore chemical mixtures on toxicity
 ___
 **[Water / Transit-Loss](https://code.usgs.gov/water/Transit-Loss)**
_Updated: 2018-12-19T17:47:09.498Z_
 
Modernization of a FORTRAN77 transit-loss accounting program developed by the USGS to estimate net reusable flows in Fountain and Monument Creeks in El Paso and Pueblo Counties, Colorado to FORTRAN 2003 standard.  
492 493
 ___
 **[Water / WREG](https://code.usgs.gov/water/WREG)**
494
_Updated: 2021-01-29T21:35:06.018Z_
495 496
 ___
 **[Water / WSC / softwSIR20205086](https://code.usgs.gov/water/wsc/softwSIR20205086)**
497
_Updated: 2021-03-22T15:39:28.419Z_
498 499 500
_Tags: Texas | bankfull | ecological region | ecoregion | hydraulic properties | streamflow_
 
Companion software to USGS SIR 2020–5086.
501 502 503 504 505 506 507
 ___
 **[Water / compHydros](https://code.usgs.gov/water/comphydros)**
_Updated: 2020-03-10T20:11:40.898Z_
 
Composite hydrographs for groundwater principle aquifers.
 ___
 **[Water / dataRetrieval](https://code.usgs.gov/water/dataRetrieval)**
508
_Updated: 2021-02-26T18:54:33.700Z_
509 510 511 512 513 514 515 516 517 518 519 520 521
 
This R package is designed to obtain USGS or EPA water quality sample data, streamflow data, and metadata directly from web services
 ___
 **[Water / facet](https://code.usgs.gov/water/facet)**
_Updated: 2020-01-08T16:18:01.903Z_
 
Floodplain and Channel Evaluation Tool

 ___
 **[Water / intersectr](https://code.usgs.gov/water/intersectr)**
_Updated: 2019-03-05T23:06:24.184Z_
 ___
 **[Water / ncdfgeom](https://code.usgs.gov/water/ncdfgeom)**
522
_Updated: 2021-04-23T12:02:54.856Z_
523 524 525 526
 
https://usgs-r.github.io/ncdfgeom/
 ___
 **[Water / nhdplusTools](https://code.usgs.gov/water/nhdplusTools)**
527
_Updated: 2021-04-05T10:47:33.242Z_
528 529 530 531 532 533 534
 
For the latest development activities or to make contributions, please see: https://github.com/usgs-r/nhdplusTools
 ___
 **[Water / nwm_subset](https://code.usgs.gov/water/nwm_subset)**
_Updated: 2020-03-03T14:28:26.597Z_
 
Some scripts to subset NWM streamflow files. Primary contributions to: https://code.usgs.gov/water/nwm_subset
535 536
 ___
 **[Water / sbtools](https://code.usgs.gov/water/sbtools)**
537
_Updated: 2021-06-07T16:25:59.685Z_
538 539
 ___
 **[Water / stats / HASP](https://code.usgs.gov/water/stats/hasp)**
540
_Updated: 2021-04-16T12:31:53.600Z_
541 542 543 544
 
Hydrologic AnalySis Package
 ___
 **[Water / stats / Multiple Grubbs-Beck Test](https://code.usgs.gov/water/stats/MGBT)**
545
_Updated: 2021-03-20T13:44:55.164Z_
546 547 548 549 550
_Tags: Bulletin 17C | EMA | discharge qualification codes | flood frequency | low outliers | peak streamflow_
 
Compute the multiple Grubbs-Beck low-outlier test on positively distributed data and a few useful utilities for non-interpretive U.S. Geological Survey annual peak-streamflow data processing.
 ___
 **[Water / stats / RSPARROW](https://code.usgs.gov/water/stats/rsparrow)**
551
_Updated: 2020-12-07T21:04:06.719Z_
552 553
 ___
 **[Water / toxEval](https://code.usgs.gov/water/toxEval)**
554
_Updated: 2020-10-13T16:05:25.307Z_
555 556 557
_Tags: rstats_
 
Initial code for studying ToxCast data in relation to measured concentrations.
558 559
 ___
 **[Water / trajPipeFlow](https://code.usgs.gov/water/trajPipeFlow)**
560
_Updated: 2021-03-23T22:25:54.455Z_
561 562 563
_Tags: horizontal discharging pipe | trajectory flow method | vertical discharging pipe | weir_
 
Functions to compute discharge from the trajectory of horizontal and vertical flowing pipes using U.S. Bureau of Reclamation methods.
564 565
 ___
 **[Water / utc2nwislocal](https://code.usgs.gov/water/utc2nwislocal)**
566
_Updated: 2021-03-22T12:35:33.564Z_
567 568 569
_Tags: Coordinated Universal Time | NWIS | National Water Information System | UTC | time zone_
 
A light-weight, dependency-free R package to compute UTC offsets from U.S. Geological Survey National Water Information System (NWIS) time-zone codes. NWIS time-zone codes are not recognized in base R that uses the Olson Names scheme.
570 571
 ___
 **[Water Mission Area / nhgf / GFv2.0](https://code.usgs.gov/wma/nhgf/gfv2.0)**
572
_Updated: 2021-06-10T17:53:01.979Z_
573 574
 
Workflow and code for development of Geospatial Fabric version 2.0
575 576
 ___
 **[Water Mission Area / nhgf / PygeoAPI](https://code.usgs.gov/wma/nhgf/pygeoapi)**
577
_Updated: 2021-06-10T20:49:09.331Z_
578 579 580
 ___
 **[Water Mission Area / nhgf / mainstems](https://code.usgs.gov/wma/nhgf/mainstems)**
_Updated: 2020-12-10T13:42:30.633Z_
581 582
 ___
 **[WaveLab / WaveLab](https://code.usgs.gov/wavelab/wavelab)**
583
_Updated: 2021-05-04T13:44:12.907Z_
584 585 586 587 588
 ___
 **[Wetland and Aquatic Research Center / eDNAOccupancy](https://code.usgs.gov/wetland-and-aquatic-research-center/ednaoccupancy)**
_Updated: 2020-06-23T17:21:41.233Z_
 ___
 **[Wildlife Telemetry Toolkit / telemetry code and collaborations](https://code.usgs.gov/wildlife-telemetry-toolkit/telemetry-code-and-collaborations)**
589
_Updated: 2020-08-26T19:24:56.618Z_
590 591 592 593 594 595 596 597 598 599
 
Provisional code for use by project collaborators and to further development.
 ___
 **[cmgp / bi-transect-extractor](https://code.usgs.gov/cmgp/bi-transect-extractor)**
_Updated: 2019-10-11T21:00:54.864Z_
 ___
 **[cmgp / squid5-software](https://code.usgs.gov/cmgp/squid5-software)**
_Updated: 2020-03-25T17:51:02.934Z_
 ___
 **[coawstmodel / COAWST](https://code.usgs.gov/coawstmodel/COAWST)**
600
_Updated: 2021-05-10T19:41:18.833Z_
601 602 603 604 605
 
Coupled-Ocean-Atmosphere-Wave Sediment Transport Modeling System src code
 ___
 **[espa / bulk-downloader](https://code.usgs.gov/espa/bulk-downloader)**
_Updated: 2020-05-15T14:23:36.725Z_
606 607 608
 ___
 **[espa / espa-notebooks](https://code.usgs.gov/espa/espa-notebooks)**
_Updated: 2021-06-02T14:43:14.992Z_
609 610
 ___
 **[espa / landsat-qa-arcgis-toolbox](https://code.usgs.gov/espa/landsat-qa-arcgis-toolbox)**
611
_Updated: 2021-04-28T19:46:51.997Z_
612 613
 
The Landsat QA ArcGIS Toolbox contains functionality to classify and/or extract bit-packed values from QA bands, which enhance the applications of interpretation, mapping, and applying QA values to Landsat data products.
614 615 616 617 618
 ___
 **[fort / NABat / nabatr](https://code.usgs.gov/fort/nabat/nabatr)**
_Updated: 2021-05-17T14:54:32.156Z_
 
R software package used to pull, reformat, and push data from/to the North American Bat Monitoring Database.  NABatR uses a GQL API authentication layer setup to interact with the NABat Database.
619 620 621 622 623
 ___
 **[fort / ecosystems-grit](https://code.usgs.gov/fort/ecosystems-grit)**
_Updated: 2018-09-11T21:46:58.694Z_
 
Geospatial Route Interface Tool
624 625 626 627 628
 ___
 **[fort / ecosystems-grsg_lekdb](https://code.usgs.gov/fort/ecosystems-grsg_lekdb)**
_Updated: 2021-06-01T22:16:53.303Z_
 
Greater sage-grouse national lek database: grsg_lekdb
629 630 631 632 633 634 635 636 637 638
 ___
 **[fort / ecosystems-popcluster](https://code.usgs.gov/fort/ecosystems-popcluster)**
_Updated: 2019-09-04T13:14:07.281Z_
 
Hierarchically nested groupings of similar habitats associated with field surveys while considering biological structure/connectedness (movements between habitats) to be used with analyzing population demographic data.
 ___
 **[fort / whas](https://code.usgs.gov/fort/whas)**
_Updated: 2020-01-14T20:34:49.587Z_
 
wild horse aerial survey
639 640 641 642 643
 ___
 **[ghsc / Engineering Seismology and Impacts / Groundfailure / gfail_lifelines](https://code.usgs.gov/ghsc/esi/groundfailure/gfail_lifelines)**
_Updated: 2021-05-18T16:53:24.263Z_
 
Codes for estimating impacts to infrastructure from earthquake-triggered ground failure in near-real-time using the USGS ground failure product probability maps. Currently only one module. gfroads estimates the road blockage probability.
644 645 646 647 648
 ___
 **[ghsc / Engineering Seismology and Impacts / dyfi](https://code.usgs.gov/ghsc/esi/dyfi)**
_Updated: 2020-03-25T16:59:14.856Z_
 
DYFI (PyDYFI) new DYFI version 4 implemented in Python
649 650 651 652 653
 ___
 **[ghsc / Engineering Seismology and Impacts / shakemap-sampling-tool](https://code.usgs.gov/ghsc/esi/shakemap-sampling-tool)**
_Updated: 2021-04-30T19:32:11.068Z_
 
Sample the online ShakeMap at input coordinates.
654 655 656 657 658 659 660
 ___
 **[ghsc / Engineering and Risk Project / design-batch-processor](https://code.usgs.gov/ghsc/erp/design-batch-processor)**
_Updated: 2019-08-19T00:10:05.781Z_
 
Desktop application for making batch requests to the earthquake-design-ws web services.
 ___
 **[ghsc / Hazards Development Team / earthquake-design-ws](https://code.usgs.gov/ghsc/hazdev/earthquake-design-ws)**
661
_Updated: 2021-06-10T21:04:42.705Z_
662 663
 
Web service provided by the U.S. Geological Survey for computing seismic design parameters compatible with various building code reference documents.
664 665
 ___
 **[ghsc / Hazards Development Team / earthquake-event-ws](https://code.usgs.gov/ghsc/hazdev/earthquake-event-ws)**
666
_Updated: 2021-06-10T14:23:34.995Z_
667 668
 
Web service and data feeds for seismic event data
669 670
 ___
 **[ghsc / Hazards Development Team / earthquake-eventadmin](https://code.usgs.gov/ghsc/hazdev/earthquake-eventadmin)**
671
_Updated: 2020-11-30T21:29:12.631Z_
672 673 674
 ___
 **[ghsc / Hazards Development Team / earthquake-geoserve-ui](https://code.usgs.gov/ghsc/hazdev/earthquake-geoserve-ui)**
_Updated: 2019-10-10T20:25:47.289Z_
675 676
 ___
 **[ghsc / Hazards Development Team / earthquake-hazard-tool](https://code.usgs.gov/ghsc/hazdev/earthquake-hazard-tool)**
677
_Updated: 2021-01-22T20:11:05.034Z_
678 679
 ___
 **[ghsc / Hazards Development Team / earthquake-latest-earthquakes](https://code.usgs.gov/ghsc/hazdev/earthquake-latest-earthquakes)**
680
_Updated: 2021-05-28T19:17:33.991Z_
681 682
 
Interactive map and list web application
683 684
 ___
 **[ghsc / Hazards Development Team / earthquake-network-operations](https://code.usgs.gov/ghsc/hazdev/earthquake-network-operations)**
685
_Updated: 2020-12-01T21:12:04.236Z_
686 687
 
Seismic network operations monitoring pages.
688 689
 ___
 **[ghsc / Hazards Development Team / earthquake-rtgm-calculator](https://code.usgs.gov/ghsc/hazdev/earthquake-rtgm-calculator)**
690
_Updated: 2021-06-07T14:22:43.937Z_
691 692
 
Web application for calculating risk targeted ground motions and risk coefficients from hazard curves.
693 694
 ___
 **[ghsc / Hazards Development Team / earthquake-website](https://code.usgs.gov/ghsc/hazdev/earthquake-website)**
695
_Updated: 2021-05-19T19:54:26.028Z_
696 697
 ___
 **[ghsc / Hazards Development Team / hazdev-basemap](https://code.usgs.gov/ghsc/hazdev/hazdev-basemap)**
698
_Updated: 2020-10-15T18:47:11.343Z_
699 700
 
Tile overlays used in hazdev applications.
701 702
 ___
 **[ghsc / Hazards Development Team / hazdev-geoserve-ws](https://code.usgs.gov/ghsc/hazdev/hazdev-geoserve-ws)**
703
_Updated: 2021-03-02T17:30:26.106Z_
704 705
 
Geoserve
706 707
 ___
 **[ghsc / Hazards Development Team / hazdev-template](https://code.usgs.gov/ghsc/hazdev/hazdev-template)**
708
_Updated: 2020-09-30T18:17:12.161Z_
709 710
 
Lightweight php template framework
711 712
 ___
 **[ghsc / Hazards Development Team / legacy-latest-earthquakes](https://code.usgs.gov/ghsc/hazdev/legacy-latest-earthquakes)**
713
_Updated: 2020-11-16T18:26:50.949Z_
714 715
 
Mobile friendly, interactive earthquake map and list application.
716 717 718 719 720
 ___
 **[ghsc / Landslide Hazards Program / DF_Growth](https://code.usgs.gov/ghsc/lhp/df_growth)**
_Updated: 2020-08-04T20:26:31.212Z_
 
Uses empirical debris-growth functions to forecast debris-flow inundation.
721 722
 ___
 **[ghsc / Landslide Hazards Program / HydroMet](https://code.usgs.gov/ghsc/lhp/hydromet)**
723
_Updated: 2021-05-19T18:30:35.303Z_
724 725
 
Repository for the program HydroMet, developed by Jacob Conrad under the supervision of Ben Mirus and Rex Baum. 
726 727 728 729 730 731 732
 ___
 **[ghsc / Landslide Hazards Program / Landslide thresholds](https://code.usgs.gov/ghsc/lhp/landslide-thresholds)**
_Updated: 2019-11-13T23:24:28.933Z_
 
Track precipitation and hydrological thresholds for landslide occurrence
 ___
 **[ghsc / Landslide Hazards Program / kw-flow-model](https://code.usgs.gov/ghsc/lhp/kw-flow-model)**
733
_Updated: 2021-06-10T18:48:56.044Z_
734 735
 
Simulate overland flow primarily in burned areas
736 737
 ___
 **[ghsc / Landslide Hazards Program / landslides-website](https://code.usgs.gov/ghsc/lhp/landslides-website)**
738
_Updated: 2021-05-18T15:36:22.044Z_
739 740
 ___
 **[ghsc / Landslide Hazards Program / lsforce](https://code.usgs.gov/ghsc/lhp/lsforce)**
741
_Updated: 2021-05-10T18:53:48.778Z_
742 743
 
A Python-based single-force seismic inversion framework for massive landslides
744 745
 ___
 **[ghsc / National Earthquake Information Center / Utilities / catalog-qc](https://code.usgs.gov/ghsc/neic/utilities/catalog-qc)**
746
_Updated: 2020-08-27T22:13:49.633Z_
747 748 749 750
 
Tools for catalog quality check
 ___
 **[ghsc / National Earthquake Information Center / neic-machine-learning](https://code.usgs.gov/ghsc/neic/neic-machine-learning)**
751
_Updated: 2021-02-26T17:20:22.467Z_
752 753
 ___
 **[ghsc / National Earthquake Information Center / slab2cloud](https://code.usgs.gov/ghsc/neic/slab2cloud)**
754
_Updated: 2020-11-12T22:08:36.450Z_
755 756 757 758 759 760 761
 ___
 **[ghsc / National Geomagnetism Program / Electromagnetic Transfer Functions / EMTF FCU](https://code.usgs.gov/ghsc/geomag/emtf/fcu)**
_Updated: 2020-07-13T21:24:01.544Z_
 
Electromagnetic Transfer Functions File Conversion Utilities (EMTF FCU), (C) 2007-2018 Anna Kelbert, is a set of Fortran 90 routines for electromagnetic transfer function file conversion and rotation.
 ___
 **[ghsc / National Geomagnetism Program / geomag-algorithms](https://code.usgs.gov/ghsc/geomag/geomag-algorithms)**
762
_Updated: 2021-06-09T15:26:06.830Z_
763 764
 
Library for processing Geomagnetic timeseries data.
765 766
 ___
 **[ghsc / National Geomagnetism Program / geomag-imp](https://code.usgs.gov/ghsc/geomag/geomag-imp)**
767
_Updated: 2020-11-02T23:36:22.895Z_
768 769
 
Python 3 library for interpolating/imputing geomagnetic field perturbations.
770 771
 ___
 **[ghsc / National Geomagnetism Program / geomag-web-absolutes](https://code.usgs.gov/ghsc/geomag/geomag-web-absolutes)**
772
_Updated: 2020-11-19T20:16:10.305Z_
773 774
 ___
 **[ghsc / National Geomagnetism Program / geomag-website](https://code.usgs.gov/ghsc/geomag/geomag-website)**
775
_Updated: 2020-11-09T21:36:58.688Z_
776 777
 ___
 **[ghsc / National Seismic Hazard Model Project / National Crustal Model / GeoFram](https://code.usgs.gov/ghsc/nshmp/ncm/GeoFram)**
778
_Updated: 2021-02-02T16:52:18.018Z_
779 780 781 782
 
Set of utilities to extract geology profiles and related information from the NCM geologic framework.
 ___
 **[ghsc / National Seismic Hazard Model Project / National Crustal Model / GeoPhys](https://code.usgs.gov/ghsc/nshmp/ncm/GeoPhys)**
783
_Updated: 2021-02-02T19:57:57.448Z_
784 785 786 787
 
Utilities to extract geophysical information from the NCM.
 ___
 **[ghsc / National Seismic Hazard Model Project / National Crustal Model / MinVel](https://code.usgs.gov/ghsc/nshmp/ncm/MinVel)**
788
_Updated: 2021-02-02T16:51:56.742Z_
789 790 791 792
 
Utility to calculate mineral and mineral aggregate moduli and density at specified temperatures and pressures.
 ___
 **[ghsc / National Seismic Hazard Model Project / National Crustal Model / TherMod](https://code.usgs.gov/ghsc/nshmp/ncm/TherMod)**
793
_Updated: 2021-02-02T16:47:19.152Z_
794 795
 
Utilities to extract temperature profiles and related information from the NCM thermal model.
796 797
 ___
 **[ghsc / National Seismic Hazard Model Project / National Crustal Model / ncm-database](https://code.usgs.gov/ghsc/nshmp/ncm/ncm-database)**
798
_Updated: 2021-02-02T19:58:11.036Z_
799 800
 ___
 **[ghsc / National Seismic Hazard Model Project / nshm-fault-sections](https://code.usgs.gov/ghsc/nshmp/nshm-fault-sections)**
801
_Updated: 2021-03-25T22:37:32.821Z_
802 803 804
_Tags: active faults | earthquake source | seismic hazard_
 
Database of geologic fault sections used in National Seismic Hazard Models (NSHMs)
805 806
 ___
 **[lcmap / pyccd](https://code.usgs.gov/lcmap/pyccd)**
807
_Updated: 2020-11-19T16:02:11.249Z_
808 809 810
 ___
 **[lcmap / research / ard-gap-filler](https://code.usgs.gov/lcmap/research/ard-gap-filler)**
_Updated: 2020-06-03T20:41:14.317Z_
811 812 813
 ___
 **[nmic / mapmark4_shiny](https://code.usgs.gov/nmic/mapmark4_shiny)**
_Updated: 2021-04-21T15:14:27.017Z_
814 815 816 817 818 819 820
 ___
 **[usgs / DAR_Magnetotelluric](https://code.usgs.gov/usgs/DAR_Magnetotelluric)**
_Updated: 2018-05-14T21:42:48.057Z_
 
Software to Process and Preserve Legacy Magnetotelluric Data
 ___
 **[usgs / MetadataWizard](https://code.usgs.gov/usgs/fort-pymdwizard)**
821
_Updated: 2020-12-02T19:38:28.364Z_
822 823 824 825 826 827 828 829 830 831 832 833 834 835
_Tags: BDP | CSDGM | Data management | FGDC | XML | metadata_
 
The user manual can be found at: https://usgs.github.io/fort-pymdwizard/

Installers can be downloaded from:  https://github.com/usgs/fort-pymdwizard/releases

Bugs and Improvements can be submitted at: https://github.com/usgs/fort-pymdwizard/issues
 ___
 **[usgs / NOROCK / Cross_P / cwdsims](https://code.usgs.gov/usgs/norock/cross_p/cwdsims)**
_Updated: 2020-05-06T18:54:15.337Z_
_Tags: R | chronic wasting disease | shiny | wildlife disease_
 
An R package to simulate chronic wasting disease dynamics. See the Readme file below for installation instructions. 

836 837 838 839 840
 ___
 **[usgs / NOROCK / Graves_T / WildAgg](https://code.usgs.gov/usgs/norock/graves_t/wildagg)**
_Updated: 2021-05-09T13:05:57.408Z_
 
WildAgg is an R package designed to estimate, summarize, and visualize wildlife aggregation metrics using location information like GPS collar data.
841 842 843 844 845 846 847 848 849 850 851 852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867 868 869 870
 ___
 **[usgs / NOROCK / Irvine_K / ip-086589](https://code.usgs.gov/usgs/norock/irvine_k/ip-086589)**
_Updated: 2019-12-10T17:41:17.104Z_
 
Code release for Zero-augmented beta (ZAB) and Zero-augmented beta with observation errors (ZABE) models 
 ___
 **[usgs / NOROCK / Irvine_K / ip-092119](https://code.usgs.gov/usgs/norock/irvine_k/ip-092119)**
_Updated: 2019-12-10T17:36:51.104Z_
 
Code release for fitting occupancy models with design weights
 ___
 **[usgs / NOROCK / Irvine_K / ip-092225](https://code.usgs.gov/usgs/norock/irvine_k/ip-092225)**
_Updated: 2019-12-10T17:29:34.148Z_
 
Code release for simulation based power analysis using false positive occupancy model (Observation Confirmation Model)
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 **[usgs / NOROCK / Irvine_K / ip-097746](https://code.usgs.gov/usgs/norock/irvine_k/ip-097746)**
_Updated: 2019-12-10T17:34:35.720Z_
 
R package to conduct simulation based power analysis with dynamic occupancy models
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 **[usgs / NOROCK / Irvine_K / ip-106111](https://code.usgs.gov/usgs/norock/irvine_k/ip-106111)**
_Updated: 2019-12-10T17:40:24.715Z_
 
Supplement S1: Code Release for fitting OZAB and OZABE to Empirical Datasets in "Cohesive Framework for Modeling Plant Cover Class Data" published in Methods in Ecology and Evolution
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 **[usgs / NOROCK / Irvine_K / ip-108057](https://code.usgs.gov/usgs/norock/irvine_k/ip-108057)**
_Updated: 2019-12-10T17:26:04.550Z_
 
Code release for bat data analyses presented in "Modelling misclassification in multi-species acoustic data when estimating occupancy and relative activity"
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 **[usgs / Project Explorer](https://code.usgs.gov/usgs/project-explorer)**
873
_Updated: 2021-05-15T00:03:49.385Z_
874 875 876
_Tags: Inventory | M-16-21 | OSS | Open Source | USGS_
 
Explore publicly released USGS software products.
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 **[usgs / gmeg-shearzone-flowstress](https://code.usgs.gov/usgs/gmeg-shearzone-flowstress)**
_Updated: 2018-02-26T19:19:13.613Z_
 
Flow Stress calculations for quartz paleopiezometery to estimate strain and slip rates.
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 **[usgs / landslides-metadata](https://code.usgs.gov/usgs/landslides-metadata)**
_Updated: 2018-07-19T16:58:23.087Z_
 
Automate production of metadata following the USGS geospatial metadata format
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 **[usgs / landslides-trigrs](https://code.usgs.gov/usgs/landslides-trigrs)**
_Updated: 2018-03-02T18:28:17.734Z_
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 **[usgs / whcmsc-rdc](https://code.usgs.gov/usgs/whcmsc-rdc)**
_Updated: 2018-03-08T19:31:27.624Z_
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 > 189 Total Public Projects
> Last Updated: Fri, 11 Jun 2021 00:04:02 GMT