diff --git a/DESCRIPTION b/DESCRIPTION
index cfe223e45a02fb21ddc6af58aa5279f406929924..601e0cf08f67778de2c684b903b28eed895681dc 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -28,3 +28,44 @@ Suggests:
LazyLoad: yes
LazyData: yes
VignetteBuilder: knitr
+Collate:
+ 'checkStartEndDate.r'
+ 'compressData.r'
+ 'constructNWISURL.r'
+ 'dataOverview.r'
+ 'dateFormatCheck.r'
+ 'formatCheckDate.r'
+ 'formatCheckParameterCd.r'
+ 'formatCheckSiteNumber.r'
+ 'getDVData.r'
+ 'getDailyDataFromFile.r'
+ 'getDataAvailability.r'
+ 'getDataFromFile.r'
+ 'getMetaData.r'
+ 'getParameterInfo.r'
+ 'getQWData.r'
+ 'getQWDataFromFile.r'
+ 'getRDB1Data.r'
+ 'getRawQWData.r'
+ 'getSTORETSampleData.R'
+ 'getSampleData.r'
+ 'getSampleDataFromFile.r'
+ 'getSiteFileData.r'
+ 'getWQPData.r'
+ 'getWaterML1Data.r'
+ 'getWaterML2Data.r'
+ 'mergeReport.r'
+ 'padVariable.r'
+ 'populateConcentrations.r'
+ 'populateDaily.r'
+ 'populateDateColumns.r'
+ 'populateParameterINFO.r'
+ 'populateSampleColumns.r'
+ 'populateSiteINFO.r'
+ 'processQWData.r'
+ 'removeDuplicates.r'
+ 'renameColumns.R'
+ 'retrieveNWISData.r'
+ 'retrieveNWISqwData.r'
+ 'retrieveUnitNWISData.r'
+ 'tabbedDataRetrievals.R'
diff --git a/man/ChoptankRiverFlow.Rd b/man/ChoptankRiverFlow.Rd
index 8bfe9ca2847a9d43687748b43cf47cd68f45917f..e3220cb26ec899e18cb50eb3f1fc2dac85c74705 100644
--- a/man/ChoptankRiverFlow.Rd
+++ b/man/ChoptankRiverFlow.Rd
@@ -3,13 +3,14 @@
\alias{ChoptankRiverFlow}
\title{Example Streamflow Data included in dataRetrieval}
\description{
-Example data representing Streamflow and Nitrate from the
-Choptank River at Greensboro, MD, USGS data
+ Example data representing Streamflow and Nitrate from the
+ Choptank River at Greensboro, MD, USGS data
}
\author{
-Robert M. Hirsch \email{rhirsch@usgs.gov}
+ Robert M. Hirsch \email{rhirsch@usgs.gov}
}
\keyword{data}
+\keyword{datasets}
\keyword{flow}
\keyword{water}
diff --git a/man/ChoptankRiverNitrate.Rd b/man/ChoptankRiverNitrate.Rd
index e7bff34301ca6d82fa07770002820a8307349788..435899d342946191abe385cedfaadce4fe6ff37e 100644
--- a/man/ChoptankRiverNitrate.Rd
+++ b/man/ChoptankRiverNitrate.Rd
@@ -3,15 +3,16 @@
\alias{ChoptankRiverNitrate}
\title{Example Water Quality Data included in dataRetrieval}
\description{
-Example data representing Nitrate from the Choptank River
-at Greensboro, MD, USGS data
-\if{html}{\figure{Chop1.png}{Example Data}}
-\if{latex}{\figure{Chop1.png}}
+ Example data representing Nitrate from the Choptank River
+ at Greensboro, MD, USGS data
+ \if{html}{\figure{Chop1.png}{Example Data}}
+ \if{latex}{\figure{Chop1.png}}
}
\author{
-Robert M. Hirsch \email{rhirsch@usgs.gov}
+ Robert M. Hirsch \email{rhirsch@usgs.gov}
}
\keyword{data}
+\keyword{datasets}
\keyword{quality}
\keyword{water}
diff --git a/man/checkStartEndDate.Rd b/man/checkStartEndDate.Rd
index 79b0c57ba60a51b825923a6994a1b1c6aaadcca7..ce5da41b9ff354cc6a75844912f837221ac37adb 100644
--- a/man/checkStartEndDate.Rd
+++ b/man/checkStartEndDate.Rd
@@ -2,7 +2,7 @@
\alias{checkStartEndDate}
\title{checkStartEndDate}
\usage{
-checkStartEndDate(StartDate, EndDate, interactive = TRUE)
+ checkStartEndDate(StartDate, EndDate, interactive = TRUE)
}
\arguments{
\item{StartDate}{string}
@@ -14,12 +14,12 @@ checkStartEndDate(StartDate, EndDate, interactive = TRUE)
data checks.}
}
\value{
-vector where first value is StartDate, second is EndDate
+ vector where first value is StartDate, second is EndDate
}
\description{
-Checks that the start date is before the end date. If not,
-it will give the user the opportunity to correct, otherwise
-will create a warning.
+ Checks that the start date is before the end date. If
+ not, it will give the user the opportunity to correct,
+ otherwise will create a warning.
}
\examples{
startDate <- '1985-01-01'
diff --git a/man/compressData.Rd b/man/compressData.Rd
index 610716850da2e9247f02abd1390b5779d16cccc2..143dbcc72c6db7959e9542ad30dd7800b2b225ab 100644
--- a/man/compressData.Rd
+++ b/man/compressData.Rd
@@ -2,7 +2,7 @@
\alias{compressData}
\title{Compress sample data frame}
\usage{
-compressData(data, interactive = TRUE)
+ compressData(data, interactive = TRUE)
}
\arguments{
\item{data}{dataframe contains at least dateTime, value,
@@ -13,17 +13,17 @@ compressData(data, interactive = TRUE)
data checks.}
}
\value{
-dataframe returnDataFrame data frame containing dateTime,
-ConcHigh, ConcLow, Uncen, ConcAve
+ dataframe returnDataFrame data frame containing dateTime,
+ ConcHigh, ConcLow, Uncen, ConcAve
}
\description{
-Using raw data that has at least dateTime, value, code,
-populates the measured data portion of the Sample data
-frame used in WRTDS ConcLow = Lower bound for an observed
-concentration ConcHigh = Upper bound for an observed
-concentration ConcAve = Average of ConcLow and ConcHigh.
-If ConcLow is NA, then ConcAve = ConcHigh/2 Uncen = 1 if
-uncensored, 0 if censored
+ Using raw data that has at least dateTime, value, code,
+ populates the measured data portion of the Sample data
+ frame used in WRTDS ConcLow = Lower bound for an observed
+ concentration ConcHigh = Upper bound for an observed
+ concentration ConcAve = Average of ConcLow and ConcHigh.
+ If ConcLow is NA, then ConcAve = ConcHigh/2 Uncen = 1 if
+ uncensored, 0 if censored
}
\examples{
dateTime <- c('1985-01-01', '1985-01-02', '1985-01-03')
diff --git a/man/constructNWISURL.Rd b/man/constructNWISURL.Rd
index 981b295f1a43cc1d44dbdc30cf9edcd1c1e57137..cb175606852aba1357fa2c1e1963f8c47cb04812 100644
--- a/man/constructNWISURL.Rd
+++ b/man/constructNWISURL.Rd
@@ -2,9 +2,9 @@
\alias{constructNWISURL}
\title{Construct NWIS url for data retrieval}
\usage{
-constructNWISURL(siteNumber, parameterCd, startDate, endDate, service,
- statCd = "00003", format = "xml", expanded = FALSE,
- interactive = TRUE)
+ constructNWISURL(siteNumber, parameterCd, startDate,
+ endDate, service, statCd = "00003", format = "xml",
+ expanded = FALSE, interactive = TRUE)
}
\arguments{
\item{siteNumber}{string or vector of strings USGS site
@@ -48,16 +48,16 @@ constructNWISURL(siteNumber, parameterCd, startDate, endDate, service,
data checks.}
}
\value{
-url string
+ url string
}
\description{
-Imports data from NWIS web service. This function gets the
-data from here:
-\url{http://nwis.waterdata.usgs.gov/nwis/qwdata} A list of
-parameter codes can be found here:
-\url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} A list
-of statistic codes can be found here:
-\url{http://nwis.waterdata.usgs.gov/nwis/help/?read_file=stat&format=table}
+ Imports data from NWIS web service. This function gets
+ the data from here:
+ \url{http://nwis.waterdata.usgs.gov/nwis/qwdata} A list
+ of parameter codes can be found here:
+ \url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} A list
+ of statistic codes can be found here:
+ \url{http://nwis.waterdata.usgs.gov/nwis/help/?read_file=stat&format=table}
}
\examples{
siteNumber <- '01594440'
diff --git a/man/dataOverview.Rd b/man/dataOverview.Rd
index 740a0591aee69a7e14ec3e27a316fbe36e299ac2..6fe56a3ac2930bf546840bcbdb75fea354dadd3f 100644
--- a/man/dataOverview.Rd
+++ b/man/dataOverview.Rd
@@ -2,7 +2,7 @@
\alias{dataOverview}
\title{Data Overview for WRTDS}
\usage{
-dataOverview(localDaily = Daily, localSample = Sample)
+ dataOverview(localDaily = Daily, localSample = Sample)
}
\arguments{
\item{localDaily}{dataframe}
@@ -10,7 +10,7 @@ dataOverview(localDaily = Daily, localSample = Sample)
\item{localSample}{dataframe}
}
\description{
-Gives a summary of data to be used for WRTDS analysis
+ Gives a summary of data to be used for WRTDS analysis
}
\examples{
# These examples require an internet connection to run
@@ -19,7 +19,7 @@ exSample <- getSampleData('01594440','01075', '1985-01-01', '1985-03-31', intera
dataOverview(localDaily = exDaily, localSample = exSample)
}
\seealso{
-\code{\link{mergeReport}}
+ \code{\link{mergeReport}}
}
\keyword{USGS}
\keyword{WRTDS}
diff --git a/man/dataRetrieval-package.Rd b/man/dataRetrieval-package.Rd
index ea978468281dbd65d3b6249d20785356ecb06e7e..055aa874443eceef6efd9efdc9fce3983d7e5c5a 100644
--- a/man/dataRetrieval-package.Rd
+++ b/man/dataRetrieval-package.Rd
@@ -3,33 +3,33 @@
\alias{dataRetrieval-package}
\title{Retrieval functions for USGS data}
\description{
-\tabular{ll}{ Package: \tab dataRetrieval\cr Type: \tab
-Package\cr Version: \tab 1.2.1\cr Date: \tab 2012-12-31\cr
-License: \tab Unlimited for this package, dependencies have
-more restrictive licensing.\cr Copyright: \tab This
-software is in the public domain because it contains
-materials that originally came from the United States
-Geological Survey, an agency of the United States
-Department of Interior. For more information, see the
-official USGS copyright policy at
-http://www.usgs.gov/visual-id/credit_usgs.html#copyright\cr
-LazyLoad: \tab yes\cr }
+ \tabular{ll}{ Package: \tab dataRetrieval\cr Type: \tab
+ Package\cr Version: \tab 1.2.1\cr Date: \tab
+ 2012-12-31\cr License: \tab Unlimited for this package,
+ dependencies have more restrictive licensing.\cr
+ Copyright: \tab This software is in the public domain
+ because it contains materials that originally came from
+ the United States Geological Survey, an agency of the
+ United States Department of Interior. For more
+ information, see the official USGS copyright policy at
+ http://www.usgs.gov/visual-id/credit_usgs.html#copyright\cr
+ LazyLoad: \tab yes\cr }
}
\details{
-Collection of functions to help retrieve USGS data from
-either web services or user provided data files.
+ Collection of functions to help retrieve USGS data from
+ either web services or user provided data files.
}
\author{
-Robert M. Hirsch \email{rhirsch@usgs.gov}, Laura De Cicco
-\email{ldecicco@usgs.gov}
+ Robert M. Hirsch \email{rhirsch@usgs.gov}, Laura De Cicco
+ \email{ldecicco@usgs.gov}
}
\references{
-Hirsch, R. M., Moyer, D. L. and Archfield, S. A. (2010),
-Weighted Regressions on Time, Discharge, and Season
-(WRTDS), with an Application to Chesapeake Bay River
-Inputs. JAWRA Journal of the American Water Resources
-Association, 46: 857-880. doi:
-10.1111/j.1752-1688.2010.00482.x
+ Hirsch, R. M., Moyer, D. L. and Archfield, S. A. (2010),
+ Weighted Regressions on Time, Discharge, and Season
+ (WRTDS), with an Application to Chesapeake Bay River
+ Inputs. JAWRA Journal of the American Water Resources
+ Association, 46: 857-880. doi:
+ 10.1111/j.1752-1688.2010.00482.x
}
\keyword{data,}
\keyword{retrieval}
diff --git a/man/dateFormatCheck.Rd b/man/dateFormatCheck.Rd
index c27c908fb22619e02e1277fa7688d9b2f24eee25..dd75fee619a69001adad54bba538e9d5980ee496 100644
--- a/man/dateFormatCheck.Rd
+++ b/man/dateFormatCheck.Rd
@@ -2,17 +2,17 @@
\alias{dateFormatCheck}
\title{dateFormatCheck}
\usage{
-dateFormatCheck(date)
+ dateFormatCheck(date)
}
\arguments{
\item{date}{string}
}
\value{
-condition logical if TRUE,
+ condition logical if TRUE,
}
\description{
-Checks to see if format is YYYY-MM-DD. Also performs a few
-other date checks.
+ Checks to see if format is YYYY-MM-DD. Also performs a
+ few other date checks.
}
\examples{
date <- '1985-01-01'
diff --git a/man/formatCheckDate.Rd b/man/formatCheckDate.Rd
index eaca3155e5c6aa3c4bf67c1564e95e2fb8ee4ed1..64c54b65061785ecf5741d3f1c4eac8c9ac3af0d 100644
--- a/man/formatCheckDate.Rd
+++ b/man/formatCheckDate.Rd
@@ -2,7 +2,7 @@
\alias{formatCheckDate}
\title{formatCheckDate}
\usage{
-formatCheckDate(Date, dateString, interactive = TRUE)
+ formatCheckDate(Date, dateString, interactive = TRUE)
}
\arguments{
\item{Date}{string}
@@ -15,12 +15,12 @@ formatCheckDate(Date, dateString, interactive = TRUE)
data checks.}
}
\value{
-condition logical if TRUE,
+ condition logical if TRUE,
}
\description{
-Response to the date format checker. If the date is not
-formated correctly, it will give the user the opportunity
-to correct, otherwise will create a warning.
+ Response to the date format checker. If the date is not
+ formated correctly, it will give the user the opportunity
+ to correct, otherwise will create a warning.
}
\examples{
Date <- '1985-01-01'
diff --git a/man/formatCheckParameterCd.Rd b/man/formatCheckParameterCd.Rd
index 416b9dbaf73b4508e727439c8877c5d64b6cc126..a506bd85e0ba4eda3d47c926635ed44c98a33fb8 100644
--- a/man/formatCheckParameterCd.Rd
+++ b/man/formatCheckParameterCd.Rd
@@ -2,7 +2,7 @@
\alias{formatCheckParameterCd}
\title{formatCheckParameterCd}
\usage{
-formatCheckParameterCd(ParameterCd, interactive = TRUE)
+ formatCheckParameterCd(ParameterCd, interactive = TRUE)
}
\arguments{
\item{ParameterCd}{string to check}
@@ -12,12 +12,12 @@ formatCheckParameterCd(ParameterCd, interactive = TRUE)
data checks.}
}
\value{
-ParameterCd string
+ ParameterCd string
}
\description{
-Checks that the parameter code is 5 digits. If it is less,
-it will pad the string with zeros. If more, ask the user to
-re-enter.
+ Checks that the parameter code is 5 digits. If it is
+ less, it will pad the string with zeros. If more, ask the
+ user to re-enter.
}
\examples{
pCode <- '01234'
diff --git a/man/formatCheckSiteNumber.Rd b/man/formatCheckSiteNumber.Rd
index fabd0d594e646a9953c069bd20958cfdca8d639b..a425ff1dd535c701ae905a9973a878307cc0c6f3 100644
--- a/man/formatCheckSiteNumber.Rd
+++ b/man/formatCheckSiteNumber.Rd
@@ -2,7 +2,7 @@
\alias{formatCheckSiteNumber}
\title{formatCheckSiteNumber}
\usage{
-formatCheckSiteNumber(siteNumber, interactive = TRUE)
+ formatCheckSiteNumber(siteNumber, interactive = TRUE)
}
\arguments{
\item{siteNumber}{string to check}
@@ -12,11 +12,11 @@ formatCheckSiteNumber(siteNumber, interactive = TRUE)
data checks.}
}
\value{
-siteNumber string
+ siteNumber string
}
\description{
-Checks that the site code is at least 8 digits. If not, it
-confirms with the user.
+ Checks that the site code is at least 8 digits. If not,
+ it confirms with the user.
}
\examples{
site<- '01234567'
diff --git a/man/getDVData.Rd b/man/getDVData.Rd
index e4e5e188261b387317b45bfc3da9e4f312bf613b..ecb58f4f9f3b6c61af010e3f3be8ed740efd8d0a 100644
--- a/man/getDVData.Rd
+++ b/man/getDVData.Rd
@@ -2,8 +2,8 @@
\alias{getDVData}
\title{Import Daily Data for WRTDS}
\usage{
-getDVData(siteNumber, ParameterCd, StartDate, EndDate, interactive = TRUE,
- convert = TRUE, format = "tsv")
+ getDVData(siteNumber, ParameterCd, StartDate, EndDate,
+ interactive = TRUE, convert = TRUE, format = "tsv")
}
\arguments{
\item{siteNumber}{string USGS site number. This is
@@ -41,15 +41,15 @@ getDVData(siteNumber, ParameterCd, StartDate, EndDate, interactive = TRUE,
expected. The default is "tsv".}
}
\value{
-Daily dataframe
+ Daily dataframe
}
\description{
-Imports data from NWIS web service. This function gets the
-data from here: \url{http://waterservices.usgs.gov/} A list
-of parameter codes can be found here:
-\url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} A list
-of statistic codes can be found here:
-\url{http://nwis.waterdata.usgs.gov/nwis/help/?read_file=stat&format=table}
+ Imports data from NWIS web service. This function gets
+ the data from here: \url{http://waterservices.usgs.gov/}
+ A list of parameter codes can be found here:
+ \url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} A list
+ of statistic codes can be found here:
+ \url{http://nwis.waterdata.usgs.gov/nwis/help/?read_file=stat&format=table}
}
\examples{
# These examples require an internet connection to run
@@ -58,7 +58,8 @@ DailyCFS <- getDVData('01594440','00060', '1985-01-01', '1985-03-31',convert=FAL
DailySuspSediment <- getDVData('01594440','80154', '1985-01-01', '1985-03-31')
}
\seealso{
-\code{\link{retrieveNWISData}}, \code{\link{populateDaily}}
+ \code{\link{retrieveNWISData}},
+ \code{\link{populateDaily}}
}
\keyword{USGS}
\keyword{WRTDS}
diff --git a/man/getDailyDataFromFile.Rd b/man/getDailyDataFromFile.Rd
index 6b72f9a4c63caea9c127e7a8867a52f603fd0892..da0b77309f7cbe933607a0be944e38193d240155 100644
--- a/man/getDailyDataFromFile.Rd
+++ b/man/getDailyDataFromFile.Rd
@@ -2,8 +2,9 @@
\alias{getDailyDataFromFile}
\title{Import Daily Data for WRTDS}
\usage{
-getDailyDataFromFile(filePath, fileName, hasHeader = TRUE, separator = ",",
- qUnit = 1, interactive = TRUE)
+ getDailyDataFromFile(filePath, fileName,
+ hasHeader = TRUE, separator = ",", qUnit = 1,
+ interactive = TRUE)
}
\arguments{
\item{filePath}{string specifying the path to the file}
@@ -25,11 +26,12 @@ getDailyDataFromFile(filePath, fileName, hasHeader = TRUE, separator = ",",
data checks.}
}
\value{
-Daily dataframe
+ Daily dataframe
}
\description{
-Imports data from a user-supplied file, and converts it to
-a Daily data frame, appropriate for WRTDS calculations.
+ Imports data from a user-supplied file, and converts it
+ to a Daily data frame, appropriate for WRTDS
+ calculations.
}
\examples{
filePath <- system.file("extdata", package="dataRetrieval")
diff --git a/man/getDataAvailability.Rd b/man/getDataAvailability.Rd
index db1119da6c0ad8626c6b171f1470681dbf4be8dc..29f79bc3de6cb6b8da103aa493be93de13b5eeaa 100644
--- a/man/getDataAvailability.Rd
+++ b/man/getDataAvailability.Rd
@@ -2,7 +2,7 @@
\alias{getDataAvailability}
\title{USGS data availability}
\usage{
-getDataAvailability(siteNumber, interactive = TRUE)
+ getDataAvailability(siteNumber, interactive = TRUE)
}
\arguments{
\item{siteNumber}{string USGS site number. This is
@@ -12,14 +12,14 @@ getDataAvailability(siteNumber, interactive = TRUE)
If true, a progress indicator is printed to the console.}
}
\value{
-retval dataframe with all information found in the expanded
-site file
+ retval dataframe with all information found in the
+ expanded site file
}
\description{
-Imports a table of available parameters, period of record,
-and count. There is also an option to load the long
-parameter names and additional information on the
-parameters with longNames=TRUE.
+ Imports a table of available parameters, period of
+ record, and count. There is also an option to load the
+ long parameter names and additional information on the
+ parameters with longNames=TRUE.
}
\examples{
# These examples require an internet connection to run
diff --git a/man/getDataFromFile.Rd b/man/getDataFromFile.Rd
index b26f16cee665c95983814edab53eef8a375f3ab3..3e07f6f1b190add53c99317891a7730efc274809 100644
--- a/man/getDataFromFile.Rd
+++ b/man/getDataFromFile.Rd
@@ -2,7 +2,8 @@
\alias{getDataFromFile}
\title{Basic Data Import for Water Flow Data}
\usage{
-getDataFromFile(filePath, fileName, hasHeader = TRUE, separator = ",")
+ getDataFromFile(filePath, fileName, hasHeader = TRUE,
+ separator = ",")
}
\arguments{
\item{filePath}{string specifying the path to the file}
@@ -16,14 +17,14 @@ getDataFromFile(filePath, fileName, hasHeader = TRUE, separator = ",")
cells}
}
\value{
-retval dataframe with dateTime, value, and code columns
+ retval dataframe with dateTime, value, and code columns
}
\description{
-Imports data from user-supplied data file. Specifically
-used to import water flow data for use in the WRTDS
-package. For WRTDS usage, the first column is expected to
-be dates, the second column measured values. The third
-column is optional, it contains any remark codes.
+ Imports data from user-supplied data file. Specifically
+ used to import water flow data for use in the WRTDS
+ package. For WRTDS usage, the first column is expected to
+ be dates, the second column measured values. The third
+ column is optional, it contains any remark codes.
}
\examples{
# Examples of how to use getDataFromFile:
diff --git a/man/getMetaData.Rd b/man/getMetaData.Rd
index 74d12b932f23983320e81ba8fd338efd9e6a56b4..91ae02d37af2334be85e06624148abed504efe14 100644
--- a/man/getMetaData.Rd
+++ b/man/getMetaData.Rd
@@ -2,7 +2,8 @@
\alias{getMetaData}
\title{Import Metadata for USGS Data}
\usage{
-getMetaData(siteNumber = "", parameterCd = "", interactive = TRUE)
+ getMetaData(siteNumber = "", parameterCd = "",
+ interactive = TRUE)
}
\arguments{
\item{siteNumber}{string USGS site number. This is
@@ -16,22 +17,22 @@ getMetaData(siteNumber = "", parameterCd = "", interactive = TRUE)
data checks.}
}
\value{
-INFO dataframe with agency, site, dateTime, value, and code
-columns
+ INFO dataframe with agency, site, dateTime, value, and
+ code columns
}
\description{
-Populates INFO data frame for WRTDS study. If either
-station number or parameter code supplied, imports data
-about a particular USGS site from NWIS web service. This
-function gets the data from here:
-\url{http://waterservices.usgs.gov/} A list of parameter
-codes can be found here:
-\url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} If
-either station number or parameter code is not supplied,
-the user will be asked to input data. Additionally, the
-user will be asked for: staAbbrev - station abbreviation,
-will be used in naming output files and for structuring
-batch jobs constitAbbrev - constitute abbreviation
+ Populates INFO data frame for WRTDS study. If either
+ station number or parameter code supplied, imports data
+ about a particular USGS site from NWIS web service. This
+ function gets the data from here:
+ \url{http://waterservices.usgs.gov/} A list of parameter
+ codes can be found here:
+ \url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} If
+ either station number or parameter code is not supplied,
+ the user will be asked to input data. Additionally, the
+ user will be asked for: staAbbrev - station abbreviation,
+ will be used in naming output files and for structuring
+ batch jobs constitAbbrev - constitute abbreviation
}
\examples{
# These examples require an internet connection to run
diff --git a/man/getParameterInfo.Rd b/man/getParameterInfo.Rd
index 004b6fd27bc4736a0139514318e0797a57dec443..2cfa2d1cad594c411b0ad17dde28ecb881046a1b 100644
--- a/man/getParameterInfo.Rd
+++ b/man/getParameterInfo.Rd
@@ -2,7 +2,7 @@
\alias{getParameterInfo}
\title{USGS Parameter Data Retrieval}
\usage{
-getParameterInfo(parameterCd, interactive = TRUE)
+ getParameterInfo(parameterCd, interactive = TRUE)
}
\arguments{
\item{parameterCd}{vector of USGS parameter codes. This
@@ -13,15 +13,15 @@ getParameterInfo(parameterCd, interactive = TRUE)
data checks.}
}
\value{
-parameterData dataframe with all information from the USGS
-about the particular parameter (usually code, name, short
-name, units, and CAS registry numbers)
+ parameterData dataframe with all information from the
+ USGS about the particular parameter (usually code, name,
+ short name, units, and CAS registry numbers)
}
\description{
-Imports data from NWIS about meaured parameter based on
-user-supplied parameter code. This function gets the data
-from here:
-\url{http://nwis.waterdata.usgs.gov/nwis/pmcodes}
+ Imports data from NWIS about meaured parameter based on
+ user-supplied parameter code. This function gets the data
+ from here:
+ \url{http://nwis.waterdata.usgs.gov/nwis/pmcodes}
}
\examples{
# These examples require an internet connection to run
diff --git a/man/getQWData.Rd b/man/getQWData.Rd
index eb2d7f3745b0c5653b43b05b6fb2e81500d90536..70f7885ccba58ef2dd0f5a29dcd5e4d5f2481bbf 100644
--- a/man/getQWData.Rd
+++ b/man/getQWData.Rd
@@ -2,7 +2,8 @@
\alias{getQWData}
\title{Data Import for USGS NWIS Water Quality Data}
\usage{
-getQWData(siteNumber, ParameterCd, StartDate, EndDate, interactive = TRUE)
+ getQWData(siteNumber, ParameterCd, StartDate, EndDate,
+ interactive = TRUE)
}
\arguments{
\item{siteNumber}{string USGS site number. This is
@@ -25,19 +26,19 @@ getQWData(siteNumber, ParameterCd, StartDate, EndDate, interactive = TRUE)
data checks.}
}
\value{
-retval dataframe with first column dateTime, and at least
-one qualifier and value columns (subsequent qualifier/value
-columns could follow depending on requested parameter
-codes)
+ retval dataframe with first column dateTime, and at least
+ one qualifier and value columns (subsequent
+ qualifier/value columns could follow depending on
+ requested parameter codes)
}
\description{
-Imports and processes data from NWIS web service. This
-function gets the data from here:
-\url{http://www.waterqualitydata.us} A list of parameter
-codes can be found here:
-\url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} A list
-of statistic codes can be found here:
-\url{http://nwis.waterdata.usgs.gov/nwis/help/?read_file=stat&format=table}
+ Imports and processes data from NWIS web service. This
+ function gets the data from here:
+ \url{http://www.waterqualitydata.us} A list of parameter
+ codes can be found here:
+ \url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} A list
+ of statistic codes can be found here:
+ \url{http://nwis.waterdata.usgs.gov/nwis/help/?read_file=stat&format=table}
}
\examples{
# These examples require an internet connection to run
diff --git a/man/getQWDataFromFile.Rd b/man/getQWDataFromFile.Rd
index 2822df05424b36257a448fd9190fd35b89688588..1303449e53bd8b0d45a379c661ae17f392bf6d38 100644
--- a/man/getQWDataFromFile.Rd
+++ b/man/getQWDataFromFile.Rd
@@ -2,7 +2,8 @@
\alias{getQWDataFromFile}
\title{Basic Data Import}
\usage{
-getQWDataFromFile(filePath, fileName, hasHeader = TRUE, separator = ",")
+ getQWDataFromFile(filePath, fileName, hasHeader = TRUE,
+ separator = ",")
}
\arguments{
\item{filePath}{string specifying the path to the file}
@@ -16,16 +17,16 @@ getQWDataFromFile(filePath, fileName, hasHeader = TRUE, separator = ",")
cells}
}
\value{
-retval dataframe
+ retval dataframe
}
\description{
-Imports data from user-supplied data file. Specifically
-used to import water quality data for use in the WRTDS
-package. For WRTDS usage, the first column is expected to
-be dates, the second column remarks (specifically < if
-censored data), and the third column is measured values.
-There can be additional columns of data, for each column of
-data, there should be a remark column preceeding.
+ Imports data from user-supplied data file. Specifically
+ used to import water quality data for use in the WRTDS
+ package. For WRTDS usage, the first column is expected to
+ be dates, the second column remarks (specifically < if
+ censored data), and the third column is measured values.
+ There can be additional columns of data, for each column
+ of data, there should be a remark column preceeding.
}
\examples{
# Examples of how to use getQWDataFromFile:
diff --git a/man/getRDB1Data.Rd b/man/getRDB1Data.Rd
index f272321bbcc1bbbf2ecbf961a1cb6c2405cb32b7..6777c95a5b7ebe752f727a1f2b0244d9aee59aab 100644
--- a/man/getRDB1Data.Rd
+++ b/man/getRDB1Data.Rd
@@ -2,7 +2,7 @@
\alias{getRDB1Data}
\title{Function to return data from the NWIS RDB 1.0 format}
\usage{
-getRDB1Data(obs_url, asDateTime = FALSE)
+ getRDB1Data(obs_url, asDateTime = FALSE)
}
\arguments{
\item{obs_url}{string containing the url for the
@@ -12,14 +12,14 @@ getRDB1Data(obs_url, asDateTime = FALSE)
as POSIXct, if FALSE, Date}
}
\value{
-data a data frame containing columns agency, site,
-dateTime, values, and remark codes for all requested
-combinations
+ data a data frame containing columns agency, site,
+ dateTime, values, and remark codes for all requested
+ combinations
}
\description{
-This function accepts a url parameter that already contains
-the desired NWIS site, parameter code, statistic, startdate
-and enddate.
+ This function accepts a url parameter that already
+ contains the desired NWIS site, parameter code,
+ statistic, startdate and enddate.
}
\examples{
sites <- "02177000"
diff --git a/man/getRawQWData.Rd b/man/getRawQWData.Rd
index 585aa3635dcf7502ef2aab3c3224e21daf89c2e3..b1aaccf3f4ba98c5ba10aa23757614e4391ceb92 100644
--- a/man/getRawQWData.Rd
+++ b/man/getRawQWData.Rd
@@ -2,7 +2,8 @@
\alias{getRawQWData}
\title{Raw Data Import for USGS NWIS Water Quality Data}
\usage{
-getRawQWData(siteNumber, ParameterCd, StartDate, EndDate, interactive = TRUE)
+ getRawQWData(siteNumber, ParameterCd, StartDate, EndDate,
+ interactive = TRUE)
}
\arguments{
\item{siteNumber}{string USGS site number. This is
@@ -23,18 +24,18 @@ getRawQWData(siteNumber, ParameterCd, StartDate, EndDate, interactive = TRUE)
data checks.}
}
\value{
-retval dataframe with first column dateTime, and at least
-one qualifier and value columns (subsequent qualifier/value
-columns could follow depending on requested parameter
-codes)
+ retval dataframe with first column dateTime, and at least
+ one qualifier and value columns (subsequent
+ qualifier/value columns could follow depending on
+ requested parameter codes)
}
\description{
-Imports data from NWIS web service. This function gets the
-data from here: \url{http://www.waterqualitydata.us} A list
-of parameter codes can be found here:
-\url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} A list
-of statistic codes can be found here:
-\url{http://nwis.waterdata.usgs.gov/nwis/help/?read_file=stat&format=table}
+ Imports data from NWIS web service. This function gets
+ the data from here: \url{http://www.waterqualitydata.us}
+ A list of parameter codes can be found here:
+ \url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} A list
+ of statistic codes can be found here:
+ \url{http://nwis.waterdata.usgs.gov/nwis/help/?read_file=stat&format=table}
}
\examples{
# These examples require an internet connection to run
diff --git a/man/getSTORETSampleData.Rd b/man/getSTORETSampleData.Rd
index 80ddabea2676f3f7e50c37e39b86450a53baca1a..5fe9a4d79738ad6db7a43422ef8e43a398527567 100644
--- a/man/getSTORETSampleData.Rd
+++ b/man/getSTORETSampleData.Rd
@@ -2,8 +2,8 @@
\alias{getSTORETSampleData}
\title{Import Sample Data for WRTDS}
\usage{
-getSTORETSampleData(siteNumber, characteristicName, StartDate, EndDate,
- interactive = TRUE)
+ getSTORETSampleData(siteNumber, characteristicName,
+ StartDate, EndDate, interactive = TRUE)
}
\arguments{
\item{siteNumber}{string site number. If USGS, it should
@@ -22,18 +22,18 @@ getSTORETSampleData(siteNumber, characteristicName, StartDate, EndDate,
data checks.}
}
\value{
-Sample dataframe
+ Sample dataframe
}
\description{
-Imports data from NWIS web service. This function gets the
-data from here: \url{http://qwwebservices.usgs.gov/} A list
-of parameter codes can be found here:
-\url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} A list
-of statistic codes can be found here:
-\url{http://nwis.waterdata.usgs.gov/nwis/help/?read_file=stat&format=table}
-For raw data, use getQWData. This function will retrieve
-the raw data, and compress it (summing constituents). See
-chapter 7 of the EGRET user guide for more details.
+ Imports data from NWIS web service. This function gets
+ the data from here: \url{http://qwwebservices.usgs.gov/}
+ A list of parameter codes can be found here:
+ \url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} A list
+ of statistic codes can be found here:
+ \url{http://nwis.waterdata.usgs.gov/nwis/help/?read_file=stat&format=table}
+ For raw data, use getQWData. This function will retrieve
+ the raw data, and compress it (summing constituents). See
+ chapter 7 of the EGRET user guide for more details.
}
\examples{
# These examples require an internet connection to run
@@ -41,8 +41,8 @@ Sample_01075 <- getSTORETSampleData('USGS-01594440','Chloride', '', '')
Sample_All <- getSTORETSampleData('WIDNR_WQX-10032762','Specific conductance', '', '')
}
\seealso{
-\code{\link{compressData}},
-\code{\link{populateSampleColumns}}
+ \code{\link{compressData}},
+ \code{\link{populateSampleColumns}}
}
\keyword{USGS}
\keyword{WRTDS}
diff --git a/man/getSampleData.Rd b/man/getSampleData.Rd
index a51361c63a3ab4e14a04ad48e8fa9c98c061213d..51fa28ff1bfdfa33f6b2a1b347002e4153e8dd5d 100644
--- a/man/getSampleData.Rd
+++ b/man/getSampleData.Rd
@@ -2,7 +2,8 @@
\alias{getSampleData}
\title{Import Sample Data for WRTDS}
\usage{
-getSampleData(siteNumber, ParameterCd, StartDate, EndDate, interactive = TRUE)
+ getSampleData(siteNumber, ParameterCd, StartDate,
+ EndDate, interactive = TRUE)
}
\arguments{
\item{siteNumber}{string USGS site number. This is
@@ -22,19 +23,19 @@ getSampleData(siteNumber, ParameterCd, StartDate, EndDate, interactive = TRUE)
data checks.}
}
\value{
-Sample dataframe
+ Sample dataframe
}
\description{
-Imports data from NWIS web service. This function gets the
-data from here:
-\url{http://nwis.waterdata.usgs.gov/nwis/qwdata/} A list of
-parameter codes can be found here:
-\url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} A list
-of statistic codes can be found here:
-\url{http://nwis.waterdata.usgs.gov/nwis/help/?read_file=stat&format=table}
-For raw data, use getQWData. This function will retrieve
-the raw data, and compress it (summing constituents). See
-section 3.4 of the vignette for more details.
+ Imports data from NWIS web service. This function gets
+ the data from here:
+ \url{http://nwis.waterdata.usgs.gov/nwis/qwdata/} A list
+ of parameter codes can be found here:
+ \url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} A list
+ of statistic codes can be found here:
+ \url{http://nwis.waterdata.usgs.gov/nwis/help/?read_file=stat&format=table}
+ For raw data, use getQWData. This function will retrieve
+ the raw data, and compress it (summing constituents). See
+ section 3.4 of the vignette for more details.
}
\examples{
# These examples require an internet connection to run
@@ -43,8 +44,8 @@ Sample_All <- getSampleData('05114000','00915;00931', '1985-01-01', '1985-03-31'
Sample_Select <- getSampleData('05114000','00915;00931', '', '')
}
\seealso{
-\code{\link{compressData}},
-\code{\link{populateSampleColumns}}
+ \code{\link{compressData}},
+ \code{\link{populateSampleColumns}}
}
\keyword{USGS}
\keyword{WRTDS}
diff --git a/man/getSampleDataFromFile.Rd b/man/getSampleDataFromFile.Rd
index 07b6008013864640e9a32e236c84f49c08a9c356..dde62ca6ecedc31e650531bb26f7a2c95a94e66c 100644
--- a/man/getSampleDataFromFile.Rd
+++ b/man/getSampleDataFromFile.Rd
@@ -2,8 +2,8 @@
\alias{getSampleDataFromFile}
\title{Import Sample Data for WRTDS}
\usage{
-getSampleDataFromFile(filePath, fileName, hasHeader = TRUE, separator = ",",
- interactive = TRUE)
+ getSampleDataFromFile(filePath, fileName,
+ hasHeader = TRUE, separator = ",", interactive = TRUE)
}
\arguments{
\item{filePath}{string specifying the path to the file}
@@ -21,13 +21,13 @@ getSampleDataFromFile(filePath, fileName, hasHeader = TRUE, separator = ",",
data checks.}
}
\value{
-Sample dataframe
+ Sample dataframe
}
\description{
-Imports data from a user-supplied file, and converts it to
-a Sample data frame (including summing multiple
-constituents), appropriate for WRTDS calculations. See
-section 3.4 of the vignette for more details.
+ Imports data from a user-supplied file, and converts it
+ to a Sample data frame (including summing multiple
+ constituents), appropriate for WRTDS calculations. See
+ section 3.4 of the vignette for more details.
}
\examples{
filePath <- system.file("extdata", package="dataRetrieval")
diff --git a/man/getSiteFileData.Rd b/man/getSiteFileData.Rd
index c71037b80492153e6bbfc08f223f56d13df77072..56f3fdff84903dc5f704b46179269f3660fb5867 100644
--- a/man/getSiteFileData.Rd
+++ b/man/getSiteFileData.Rd
@@ -2,7 +2,7 @@
\alias{getSiteFileData}
\title{USGS Site File Data Retrieval}
\usage{
-getSiteFileData(siteNumber = "", interactive = TRUE)
+ getSiteFileData(siteNumber = "", interactive = TRUE)
}
\arguments{
\item{siteNumber}{string USGS site number. This is
@@ -13,12 +13,12 @@ getSiteFileData(siteNumber = "", interactive = TRUE)
data checks.}
}
\value{
-retval dataframe with all information found in the expanded
-site file
+ retval dataframe with all information found in the
+ expanded site file
}
\description{
-Imports data from USGS site file site. This function gets
-data from here: \url{http://waterservices.usgs.gov/}
+ Imports data from USGS site file site. This function gets
+ data from here: \url{http://waterservices.usgs.gov/}
}
\examples{
# These examples require an internet connection to run
diff --git a/man/getWQPData.Rd b/man/getWQPData.Rd
index 4ae5b2b914b749a76fbdf5476f162799333ddeaa..a3b275d477aa664bc684d798eb3b33d64ddcf9f5 100644
--- a/man/getWQPData.Rd
+++ b/man/getWQPData.Rd
@@ -2,8 +2,8 @@
\alias{getWQPData}
\title{Data Import from Water Quality Portal}
\usage{
-getWQPData(siteNumber, characteristicName, StartDate, EndDate,
- interactive = TRUE)
+ getWQPData(siteNumber, characteristicName, StartDate,
+ EndDate, interactive = TRUE)
}
\arguments{
\item{siteNumber}{string site number. If USGS, it should
@@ -22,20 +22,21 @@ getWQPData(siteNumber, characteristicName, StartDate, EndDate,
data checks.}
}
\value{
-retval dataframe with first column dateTime, and at least
-one qualifier and value columns (subsequent qualifier/value
-columns could follow depending on requested parameter
-codes)
+ retval dataframe with first column dateTime, and at least
+ one qualifier and value columns (subsequent
+ qualifier/value columns could follow depending on
+ requested parameter codes)
}
\description{
-Imports data from Water Quality Portal web service. This
-function gets the data from here:
-\url{http://www.waterqualitydata.us}. This function is more
-general than getQWData because it allows for other agencies
-rather than the USGS. Therefore, the 5-digit parameter
-code cannot be used. Instead, this function uses
-characteristicName. A complete list can be found here
-\url{http://www.waterqualitydata.us/Codes/Characteristicname}
+ Imports data from Water Quality Portal web service. This
+ function gets the data from here:
+ \url{http://www.waterqualitydata.us}. This function is
+ more general than getQWData because it allows for other
+ agencies rather than the USGS. Therefore, the 5-digit
+ parameter code cannot be used. Instead, this function
+ uses characteristicName. A complete list can be found
+ here
+ \url{http://www.waterqualitydata.us/Codes/Characteristicname}
}
\examples{
# These examples require an internet connection to run
diff --git a/man/getWaterML1Data.Rd b/man/getWaterML1Data.Rd
index ffedec547bf6235307a07e88704d5048c1a43f79..1c2948ae44b915f9b244e20f01a07b4575c61521 100644
--- a/man/getWaterML1Data.Rd
+++ b/man/getWaterML1Data.Rd
@@ -2,21 +2,21 @@
\alias{getWaterML1Data}
\title{Function to return data from the NWISWeb WaterML1.1 service}
\usage{
-getWaterML1Data(obs_url)
+ getWaterML1Data(obs_url)
}
\arguments{
\item{obs_url}{string containing the url for the
retrieval}
}
\value{
-mergedDF a data frame containing columns agency, site,
-dateTime, values, and remark codes for all requested
-combinations
+ mergedDF a data frame containing columns agency, site,
+ dateTime, values, and remark codes for all requested
+ combinations
}
\description{
-This function accepts a url parameter that already contains
-the desired NWIS site, parameter code, statistic, startdate
-and enddate.
+ This function accepts a url parameter that already
+ contains the desired NWIS site, parameter code,
+ statistic, startdate and enddate.
}
\examples{
sites <- "02177000"
diff --git a/man/getWaterML2Data.Rd b/man/getWaterML2Data.Rd
index ee6372c47ff03753e45acb6c4260f2448a7a5366..0c747e83688d3d298d09a95f8f61be2809265d1d 100644
--- a/man/getWaterML2Data.Rd
+++ b/man/getWaterML2Data.Rd
@@ -2,20 +2,20 @@
\alias{getWaterML2Data}
\title{Function to return data from the WaterML2 data}
\usage{
-getWaterML2Data(obs_url)
+ getWaterML2Data(obs_url)
}
\arguments{
\item{obs_url}{string containing the url for the
retrieval}
}
\value{
-mergedDF a data frame containing columns agency, site,
-dateTime, values, and remark codes for all requested
-combinations
+ mergedDF a data frame containing columns agency, site,
+ dateTime, values, and remark codes for all requested
+ combinations
}
\description{
-This function accepts a url parameter for a WaterML2
-getObservation
+ This function accepts a url parameter for a WaterML2
+ getObservation
}
\examples{
URL <- "http://webvastage6.er.usgs.gov/ogc-swie/wml2/dv/sos?request=GetObservation&featureID=435601087432701&observedProperty=00045&beginPosition=2012-01-01&offering=Sum"
diff --git a/man/mergeReport.Rd b/man/mergeReport.Rd
index 120ef00b2bdec36247080c0cae2239db5ee68746..f66466308fd52d95f367657fb9bddeb9162702c2 100644
--- a/man/mergeReport.Rd
+++ b/man/mergeReport.Rd
@@ -2,7 +2,8 @@
\alias{mergeReport}
\title{Merge Sample and Daily Data for WRTDS}
\usage{
-mergeReport(localDaily = Daily, localSample = Sample, interactive = TRUE)
+ mergeReport(localDaily = Daily, localSample = Sample,
+ interactive = TRUE)
}
\arguments{
\item{localDaily}{dataframe containing the daily data,
@@ -16,11 +17,11 @@ mergeReport(localDaily = Daily, localSample = Sample, interactive = TRUE)
data checks.}
}
\value{
-newSample dataframe with merged flow information
+ newSample dataframe with merged flow information
}
\description{
-Merges the flow data from the daily record into the sample
-record.
+ Merges the flow data from the daily record into the
+ sample record.
}
\examples{
# These examples require an internet connection to run
@@ -29,8 +30,8 @@ Sample <- getSampleData('01594440','01075', '1985-01-01', '1985-03-31')
Sample <- mergeReport()
}
\seealso{
-\code{\link{getDVData}},
-\code{\link{populateSampleColumns}}
+ \code{\link{getDVData}},
+ \code{\link{populateSampleColumns}}
}
\keyword{USGS}
\keyword{WRTDS}
diff --git a/man/padVariable.Rd b/man/padVariable.Rd
index 78b7545f4a083114d0e73cf95593b6b9bb059cb6..cf3aee545f2616faa1b17dcc20135c43ea3b97f8 100644
--- a/man/padVariable.Rd
+++ b/man/padVariable.Rd
@@ -2,7 +2,7 @@
\alias{padVariable}
\title{Pad string with leading zeros}
\usage{
-padVariable(x, padTo)
+ padVariable(x, padTo)
}
\arguments{
\item{x}{string}
@@ -10,11 +10,11 @@ padVariable(x, padTo)
\item{padTo}{number Final desired length of the string}
}
\value{
-x string returned with leading zeros
+ x string returned with leading zeros
}
\description{
-Function to pad a string with leading zeros. Useful for
-parameter codes and USGS site IDs.
+ Function to pad a string with leading zeros. Useful for
+ parameter codes and USGS site IDs.
}
\examples{
pCode <- '10'
diff --git a/man/parameterCdFile.Rd b/man/parameterCdFile.Rd
index 5fa4a02f9eab8bdef7bc0dc32ef97996561b7f60..d6a4416372af38f5db25592a2026d97b8653f192 100644
--- a/man/parameterCdFile.Rd
+++ b/man/parameterCdFile.Rd
@@ -3,9 +3,10 @@
\alias{parameterCdFile}
\title{List of USGS parameter codes}
\description{
-Complete list of USGS parameter codes as of September 25,
-2013.
+ Complete list of USGS parameter codes as of September 25,
+ 2013.
}
\keyword{USGS}
+\keyword{datasets}
\keyword{parameterCd}
diff --git a/man/populateConcentrations.Rd b/man/populateConcentrations.Rd
index 4e17c04523c345c2e54fb39ca176fa3cc3b0f415..14b30908b3a1b6f687a8b641c60d9d0a00c87414 100644
--- a/man/populateConcentrations.Rd
+++ b/man/populateConcentrations.Rd
@@ -2,17 +2,18 @@
\alias{populateConcentrations}
\title{Populate Concentration Columns}
\usage{
-populateConcentrations(rawData)
+ populateConcentrations(rawData)
}
\arguments{
\item{rawData}{vector with value and code columns}
}
\value{
-concentrationColumns dataframe
+ concentrationColumns dataframe
}
\description{
-Creates ConcLow, ConcHigh, Uncen (0 if censored, 1 if
-uncensored) columns for Sample data frame for WRTDS study.
+ Creates ConcLow, ConcHigh, Uncen (0 if censored, 1 if
+ uncensored) columns for Sample data frame for WRTDS
+ study.
}
\examples{
code <- c("","<","")
diff --git a/man/populateDaily.Rd b/man/populateDaily.Rd
index ae00ff554a937fd3bc398aab2fe408e9aea7b0f9..17b7ddd74e351dadf310ac4ee1cfb9747b4d99b8 100644
--- a/man/populateDaily.Rd
+++ b/man/populateDaily.Rd
@@ -2,7 +2,7 @@
\alias{populateDaily}
\title{Populate Daily data frame}
\usage{
-populateDaily(rawData, qConvert, interactive = TRUE)
+ populateDaily(rawData, qConvert, interactive = TRUE)
}
\arguments{
\item{rawData}{dataframe contains at least dateTime,
@@ -16,12 +16,12 @@ populateDaily(rawData, qConvert, interactive = TRUE)
data checks.}
}
\value{
-dataframe Daily
+ dataframe Daily
}
\description{
-Using raw data that has at least dateTime, value, code,
-populates the rest of the basic Daily data frame used in
-WRTDS
+ Using raw data that has at least dateTime, value, code,
+ populates the rest of the basic Daily data frame used in
+ WRTDS
}
\examples{
dateTime <- c('1985-01-01', '1985-01-02', '1985-01-03')
@@ -31,7 +31,7 @@ dataInput <- data.frame(dateTime, value, code, stringsAsFactors=FALSE)
Daily <- populateDaily(dataInput, 2)
}
\author{
-Robert M. Hirsch \email{rhirsch@usgs.gov}
+ Robert M. Hirsch \email{rhirsch@usgs.gov}
}
\keyword{WRTDS}
\keyword{flow}
diff --git a/man/populateDateColumns.Rd b/man/populateDateColumns.Rd
index e74551f2a57e471a76be2a595764ed047765a87a..0db70e8dac1c8a0c0d483d8076dbbd2441b6e9c1 100644
--- a/man/populateDateColumns.Rd
+++ b/man/populateDateColumns.Rd
@@ -2,16 +2,16 @@
\alias{populateDateColumns}
\title{Populate Date Columns}
\usage{
-populateDateColumns(rawData)
+ populateDateColumns(rawData)
}
\arguments{
\item{rawData}{vector with dateTime}
}
\value{
-DateFrame dataframe
+ DateFrame dataframe
}
\description{
-Creates various date columns for WRTDS study.
+ Creates various date columns for WRTDS study.
}
\examples{
dateTime <- c('1984-01-01', '1985-01-02', '1986-01-03')
diff --git a/man/populateParameterINFO.Rd b/man/populateParameterINFO.Rd
index 2571ef3858622ab4c8c5d0d7c6f3cebcfc11907d..695a65d08d98375adf4e338e4a7702e89c251143 100644
--- a/man/populateParameterINFO.Rd
+++ b/man/populateParameterINFO.Rd
@@ -2,7 +2,8 @@
\alias{populateParameterINFO}
\title{Populate Parameter Information Columns}
\usage{
-populateParameterINFO(parameterCd, localINFO = INFO, interactive = TRUE)
+ populateParameterINFO(parameterCd, localINFO = INFO,
+ interactive = TRUE)
}
\arguments{
\item{localINFO}{dataframe with value and code columns.
@@ -15,11 +16,11 @@ populateParameterINFO(parameterCd, localINFO = INFO, interactive = TRUE)
data checks.}
}
\value{
-localINFO dataframe
+ localINFO dataframe
}
\description{
-Populates INFO data frame with additional user-supplied
-information concerning the measured parameter.
+ Populates INFO data frame with additional user-supplied
+ information concerning the measured parameter.
}
\examples{
#This example requires an internet connection to run
diff --git a/man/populateSampleColumns.Rd b/man/populateSampleColumns.Rd
index d22334a22df295fb7cbe0741a830b3e1b7165f57..e7a10161bd6984ec08eac0d989f9470368cd116f 100644
--- a/man/populateSampleColumns.Rd
+++ b/man/populateSampleColumns.Rd
@@ -2,18 +2,18 @@
\alias{populateSampleColumns}
\title{Populate Sample Columns}
\usage{
-populateSampleColumns(rawData)
+ populateSampleColumns(rawData)
}
\arguments{
\item{rawData}{dataframe with dateTime, ConcLow,
ConcHigh, Uncen}
}
\value{
-Sample2 dataframe
+ Sample2 dataframe
}
\description{
-Creates ConcAve and ConcLow based on Uncen. Removes any
-samples with NA values in ConcHigh
+ Creates ConcAve and ConcLow based on Uncen. Removes any
+ samples with NA values in ConcHigh
}
\examples{
dateTime <- c('1985-01-01', '1985-01-02', '1985-01-03')
diff --git a/man/populateSiteINFO.Rd b/man/populateSiteINFO.Rd
index 7095cf68837e6effc1bf67142ddb56eafc8804b0..ac90811d19a6ba630d697f101d24b3bba1f015f6 100644
--- a/man/populateSiteINFO.Rd
+++ b/man/populateSiteINFO.Rd
@@ -2,7 +2,7 @@
\alias{populateSiteINFO}
\title{Populate Site Information Columns}
\usage{
-populateSiteINFO(INFO, siteNumber, interactive = TRUE)
+ populateSiteINFO(INFO, siteNumber, interactive = TRUE)
}
\arguments{
\item{INFO}{dataframe with value and code columns}
@@ -14,12 +14,12 @@ populateSiteINFO(INFO, siteNumber, interactive = TRUE)
data checks.}
}
\value{
-INFO dataframe
+ INFO dataframe
}
\description{
-Populates INFO data frame with additional user-supplied
-information. Also removes fields not related to WRTDS
-study.
+ Populates INFO data frame with additional user-supplied
+ information. Also removes fields not related to WRTDS
+ study.
}
\examples{
#This example requires an internet connection to run
diff --git a/man/processQWData.Rd b/man/processQWData.Rd
index 8c3d83fd8fbb7e759bab0dfacb57c8b988969a1f..660c8bb571bcef093ad463a30d4d779727da1c13 100644
--- a/man/processQWData.Rd
+++ b/man/processQWData.Rd
@@ -2,23 +2,23 @@
\alias{processQWData}
\title{Processing of USGS NWIS Water Quality Data}
\usage{
-processQWData(data)
+ processQWData(data)
}
\arguments{
\item{data}{dataframe from}
}
\value{
-data dataframe with first column dateTime, and at least one
-qualifier and value columns (subsequent qualifier/value
-columns could follow depending on the number of parameter
-codes)
+ data dataframe with first column dateTime, and at least
+ one qualifier and value columns (subsequent
+ qualifier/value columns could follow depending on the
+ number of parameter codes)
}
\description{
-Processes water quality portal data. This function looks at
-detection limit and detection conditions to determine if a
-value is left censored or not. Censored values are given
-the qualifier "<". The dataframe is also converted from a
-long to wide format.
+ Processes water quality portal data. This function looks
+ at detection limit and detection conditions to determine
+ if a value is left censored or not. Censored values are
+ given the qualifier "<". The dataframe is also converted
+ from a long to wide format.
}
\examples{
# These examples require an internet connection to run
diff --git a/man/removeDuplicates.Rd b/man/removeDuplicates.Rd
index 979f6a3252d165c5317c092a07728d7a7c1b83b9..a68826fd301415d60465fce1001c5167cbe59219 100644
--- a/man/removeDuplicates.Rd
+++ b/man/removeDuplicates.Rd
@@ -2,19 +2,19 @@
\alias{removeDuplicates}
\title{Remove Duplicates}
\usage{
-removeDuplicates(localSample = Sample)
+ removeDuplicates(localSample = Sample)
}
\arguments{
\item{localSample}{dataframe with at least DecYear and
ConcHigh, default name is Sample}
}
\value{
-Sample1 dataframe
+ Sample1 dataframe
}
\description{
-Removes observations from the data frame Sample when the
-observation has the identical date and value as another
-observation
+ Removes observations from the data frame Sample when the
+ observation has the identical date and value as another
+ observation
}
\examples{
DecYear <- c('1985.01', '1985.01', '1985.02', '1985.02', '1985.03')
diff --git a/man/renameColumns.Rd b/man/renameColumns.Rd
index 22bb81cedcb824ec6dea8a581edcc28ba49ecd3e..2ed426adfd8e344186d20be8211cc1ee62d1546c 100644
--- a/man/renameColumns.Rd
+++ b/man/renameColumns.Rd
@@ -2,17 +2,17 @@
\alias{renameColumns}
\title{renameColumns}
\usage{
-renameColumns(rawData)
+ renameColumns(rawData)
}
\arguments{
\item{rawData}{dataframe returned from retrieval
functions}
}
\value{
-rawData dataframe with improved column names
+ rawData dataframe with improved column names
}
\description{
-Rename columns coming back from NWIS data retrievals
+ Rename columns coming back from NWIS data retrievals
}
\examples{
# This example requires an internet connection to run
diff --git a/man/retrieveNWISData.Rd b/man/retrieveNWISData.Rd
index 27a746ce0470fc59b2c87d885969539d6a6fa2a2..bfcd0d82d3684f4687c36973b2b89ec992d7057b 100644
--- a/man/retrieveNWISData.Rd
+++ b/man/retrieveNWISData.Rd
@@ -2,8 +2,9 @@
\alias{retrieveNWISData}
\title{Raw Data Import for USGS NWIS Data}
\usage{
-retrieveNWISData(siteNumber, ParameterCd, StartDate, EndDate,
- StatCd = "00003", format = "tsv", interactive = TRUE)
+ retrieveNWISData(siteNumber, ParameterCd, StartDate,
+ EndDate, StatCd = "00003", format = "tsv",
+ interactive = TRUE)
}
\arguments{
\item{siteNumber}{string USGS site number. This is
@@ -37,16 +38,16 @@ retrieveNWISData(siteNumber, ParameterCd, StartDate, EndDate,
data checks.}
}
\value{
-data dataframe with agency, site, dateTime, value, and code
-columns
+ data dataframe with agency, site, dateTime, value, and
+ code columns
}
\description{
-Imports data from NWIS web service. This function gets the
-data from here: \url{http://waterservices.usgs.gov/} A list
-of parameter codes can be found here:
-\url{http://help.waterdata.usgs.gov/codes-and-parameters/parameters}
-A list of statistic codes can be found here:
-\url{http://help.waterdata.usgs.gov/code/stat_code_query?fmt=html}
+ Imports data from NWIS web service. This function gets
+ the data from here: \url{http://waterservices.usgs.gov/}
+ A list of parameter codes can be found here:
+ \url{http://help.waterdata.usgs.gov/codes-and-parameters/parameters}
+ A list of statistic codes can be found here:
+ \url{http://help.waterdata.usgs.gov/code/stat_code_query?fmt=html}
}
\examples{
# These examples require an internet connection to run
diff --git a/man/retrieveNWISqwData.Rd b/man/retrieveNWISqwData.Rd
index ae2ccb1b0732f489e5f58a0a4818f8543c5e9636..e7ef52290e23110daaaee417285e261f88f30b87 100644
--- a/man/retrieveNWISqwData.Rd
+++ b/man/retrieveNWISqwData.Rd
@@ -2,8 +2,8 @@
\alias{retrieveNWISqwData}
\title{Raw Data Import for USGS NWIS QW Data}
\usage{
-retrieveNWISqwData(siteNumber, pCodes, startDate, endDate, expanded = FALSE,
- interactive = TRUE)
+ retrieveNWISqwData(siteNumber, pCodes, startDate,
+ endDate, expanded = FALSE, interactive = TRUE)
}
\arguments{
\item{siteNumber}{string or vector of strings USGS site
@@ -31,17 +31,17 @@ retrieveNWISqwData(siteNumber, pCodes, startDate, endDate, expanded = FALSE,
data checks.}
}
\value{
-data dataframe with agency, site, dateTime, value, and code
-columns
+ data dataframe with agency, site, dateTime, value, and
+ code columns
}
\description{
-Imports data from NWIS web service. This function gets the
-data from here:
-\url{http://nwis.waterdata.usgs.gov/nwis/qwdata} A list of
-parameter codes can be found here:
-\url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} A list
-of statistic codes can be found here:
-\url{http://nwis.waterdata.usgs.gov/nwis/help/?read_file=stat&format=table}
+ Imports data from NWIS web service. This function gets
+ the data from here:
+ \url{http://nwis.waterdata.usgs.gov/nwis/qwdata} A list
+ of parameter codes can be found here:
+ \url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} A list
+ of statistic codes can be found here:
+ \url{http://nwis.waterdata.usgs.gov/nwis/help/?read_file=stat&format=table}
}
\examples{
# These examples require an internet connection to run
diff --git a/man/retrieveUnitNWISData.Rd b/man/retrieveUnitNWISData.Rd
index e3599824a06e0a901bcb6d480a80e80ff9a881f5..05e4bd29288ce6e2318022fa2f8bba1d78be1f2a 100644
--- a/man/retrieveUnitNWISData.Rd
+++ b/man/retrieveUnitNWISData.Rd
@@ -2,8 +2,8 @@
\alias{retrieveUnitNWISData}
\title{Raw Data Import for Instantaneous USGS NWIS Data}
\usage{
-retrieveUnitNWISData(siteNumber, ParameterCd, StartDate, EndDate,
- format = "xml", interactive = TRUE)
+ retrieveUnitNWISData(siteNumber, ParameterCd, StartDate,
+ EndDate, format = "xml", interactive = TRUE)
}
\arguments{
\item{siteNumber}{string USGS site number. This is
@@ -34,16 +34,16 @@ retrieveUnitNWISData(siteNumber, ParameterCd, StartDate, EndDate,
expected. The default is therefore "xml".}
}
\value{
-data dataframe with agency, site, dateTime, time zone,
-value, and code columns
+ data dataframe with agency, site, dateTime, time zone,
+ value, and code columns
}
\description{
-Imports data from NWIS web service. This function gets the
-data from here: \url{http://waterservices.usgs.gov/} A list
-of parameter codes can be found here:
-\url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} A list
-of statistic codes can be found here:
-\url{http://nwis.waterdata.usgs.gov/nwis/help/?read_file=stat&format=table}
+ Imports data from NWIS web service. This function gets
+ the data from here: \url{http://waterservices.usgs.gov/}
+ A list of parameter codes can be found here:
+ \url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} A list
+ of statistic codes can be found here:
+ \url{http://nwis.waterdata.usgs.gov/nwis/help/?read_file=stat&format=table}
}
\examples{
siteNumber <- '05114000'