diff --git a/DESCRIPTION b/DESCRIPTION
index cfeac6c5670a1a02758c293e2f07e1232f481b02..a144b79dd37afcf7b922786b16a68164e953c819 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -13,47 +13,6 @@ Copyright: This software is in the public domain because it contains materials
     the United States Department of Interior. For more information, see the
     official USGS copyright policy at
     http://www.usgs.gov/visual-id/credit_usgs.html#copyright
-Collate:
-    'tabbedDataRetrievals.R'
-    'retrieveNWISData.r'
-    'getQWData.r'
-    'getSiteFileData.r'
-    'getDataFromFile.r'
-    'getParameterInfo.r'
-    'checkStartEndDate.r'
-    'dateFormatCheck.r'
-    'formatCheckDate.r'
-    'formatCheckParameterCd.r'
-    'formatCheckSiteNumber.r'
-    'getQWDataFromFile.r'
-    'populateDaily.r'
-    'compressData.r'
-    'populateSampleColumns.r'
-    'populateDateColumns.r'
-    'populateConcentrations.r'
-    'populateSiteINFO.r'
-    'populateParameterINFO.r'
-    'removeDuplicates.r'
-    'getDVData.r'
-    'getDailyDataFromFile.r'
-    'getSampleData.r'
-    'getSampleDataFromFile.r'
-    'getMetaData.r'
-    'mergeReport.r'
-    'dataOverview.r'
-    'getWQPData.r'
-    'retrieveUnitNWISData.r'
-    'getRawQWData.r'
-    'retrieveNWISqwData.r'
-    'processQWData.r'
-    'constructNWISURL.r'
-    'getDataAvailability.r'
-    'getWaterML1Data.r'
-    'padVariable.r'
-    'getRDB1Data.r'
-    'getSTORETSampleData.R'
-    'getWaterML2Data.r'
-    'renameColumns.R'
 Depends:
     R (>= 3.0)
 Imports:
diff --git a/man/ChoptankRiverFlow.Rd b/man/ChoptankRiverFlow.Rd
index e3220cb26ec899e18cb50eb3f1fc2dac85c74705..8bfe9ca2847a9d43687748b43cf47cd68f45917f 100644
--- a/man/ChoptankRiverFlow.Rd
+++ b/man/ChoptankRiverFlow.Rd
@@ -3,14 +3,13 @@
 \alias{ChoptankRiverFlow}
 \title{Example Streamflow Data included in dataRetrieval}
 \description{
-  Example data representing Streamflow and Nitrate from the
-  Choptank River at Greensboro, MD, USGS data
+Example data representing Streamflow and Nitrate from the
+Choptank River at Greensboro, MD, USGS data
 }
 \author{
-  Robert M. Hirsch \email{rhirsch@usgs.gov}
+Robert M. Hirsch \email{rhirsch@usgs.gov}
 }
 \keyword{data}
-\keyword{datasets}
 \keyword{flow}
 \keyword{water}
 
diff --git a/man/ChoptankRiverNitrate.Rd b/man/ChoptankRiverNitrate.Rd
index 435899d342946191abe385cedfaadce4fe6ff37e..e7bff34301ca6d82fa07770002820a8307349788 100644
--- a/man/ChoptankRiverNitrate.Rd
+++ b/man/ChoptankRiverNitrate.Rd
@@ -3,16 +3,15 @@
 \alias{ChoptankRiverNitrate}
 \title{Example Water Quality Data included in dataRetrieval}
 \description{
-  Example data representing Nitrate from the Choptank River
-  at Greensboro, MD, USGS data
-  \if{html}{\figure{Chop1.png}{Example Data}}
-  \if{latex}{\figure{Chop1.png}}
+Example data representing Nitrate from the Choptank River
+at Greensboro, MD, USGS data
+\if{html}{\figure{Chop1.png}{Example Data}}
+\if{latex}{\figure{Chop1.png}}
 }
 \author{
-  Robert M. Hirsch \email{rhirsch@usgs.gov}
+Robert M. Hirsch \email{rhirsch@usgs.gov}
 }
 \keyword{data}
-\keyword{datasets}
 \keyword{quality}
 \keyword{water}
 
diff --git a/man/checkStartEndDate.Rd b/man/checkStartEndDate.Rd
index ce5da41b9ff354cc6a75844912f837221ac37adb..79b0c57ba60a51b825923a6994a1b1c6aaadcca7 100644
--- a/man/checkStartEndDate.Rd
+++ b/man/checkStartEndDate.Rd
@@ -2,7 +2,7 @@
 \alias{checkStartEndDate}
 \title{checkStartEndDate}
 \usage{
-  checkStartEndDate(StartDate, EndDate, interactive = TRUE)
+checkStartEndDate(StartDate, EndDate, interactive = TRUE)
 }
 \arguments{
   \item{StartDate}{string}
@@ -14,12 +14,12 @@
   data checks.}
 }
 \value{
-  vector where first value is StartDate, second is EndDate
+vector where first value is StartDate, second is EndDate
 }
 \description{
-  Checks that the start date is before the end date.  If
-  not, it will give the user the opportunity to correct,
-  otherwise will create a warning.
+Checks that the start date is before the end date.  If not,
+it will give the user the opportunity to correct, otherwise
+will create a warning.
 }
 \examples{
 startDate <- '1985-01-01'
diff --git a/man/compressData.Rd b/man/compressData.Rd
index 143dbcc72c6db7959e9542ad30dd7800b2b225ab..610716850da2e9247f02abd1390b5779d16cccc2 100644
--- a/man/compressData.Rd
+++ b/man/compressData.Rd
@@ -2,7 +2,7 @@
 \alias{compressData}
 \title{Compress sample data frame}
 \usage{
-  compressData(data, interactive = TRUE)
+compressData(data, interactive = TRUE)
 }
 \arguments{
   \item{data}{dataframe contains at least dateTime, value,
@@ -13,17 +13,17 @@
   data checks.}
 }
 \value{
-  dataframe returnDataFrame data frame containing dateTime,
-  ConcHigh, ConcLow, Uncen, ConcAve
+dataframe returnDataFrame data frame containing dateTime,
+ConcHigh, ConcLow, Uncen, ConcAve
 }
 \description{
-  Using raw data that has at least dateTime, value, code,
-  populates the measured data portion of the Sample data
-  frame used in WRTDS ConcLow = Lower bound for an observed
-  concentration ConcHigh = Upper bound for an observed
-  concentration ConcAve = Average of ConcLow and ConcHigh.
-  If ConcLow is NA, then ConcAve = ConcHigh/2 Uncen = 1 if
-  uncensored, 0 if censored
+Using raw data that has at least dateTime, value, code,
+populates the measured data portion of the Sample data
+frame used in WRTDS ConcLow = Lower bound for an observed
+concentration ConcHigh = Upper bound for an observed
+concentration ConcAve = Average of ConcLow and ConcHigh.
+If ConcLow is NA, then ConcAve = ConcHigh/2 Uncen = 1 if
+uncensored, 0 if censored
 }
 \examples{
 dateTime <- c('1985-01-01', '1985-01-02', '1985-01-03')
diff --git a/man/constructNWISURL.Rd b/man/constructNWISURL.Rd
index 69e70cecc0627af3f24b0a861b11b7e1e4c33264..6d55f6e3adca5c0c9b76908063593d17149e6687 100644
--- a/man/constructNWISURL.Rd
+++ b/man/constructNWISURL.Rd
@@ -2,9 +2,8 @@
 \alias{constructNWISURL}
 \title{Construct NWIS url for data retrieval}
 \usage{
-  constructNWISURL(siteNumber, parameterCd, startDate,
-    endDate, service, statCd = "00003", format = "xml",
-    interactive = TRUE)
+constructNWISURL(siteNumber, parameterCd, startDate, endDate, service,
+  statCd = "00003", format = "xml", interactive = TRUE)
 }
 \arguments{
   \item{siteNumber}{string or vector of strings USGS site
@@ -44,16 +43,16 @@
   data checks.}
 }
 \value{
-  url string
+url string
 }
 \description{
-  Imports data from NWIS web service. This function gets
-  the data from here:
-  \url{http://nwis.waterdata.usgs.gov/nwis/qwdata} A list
-  of parameter codes can be found here:
-  \url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} A list
-  of statistic codes can be found here:
-  \url{http://nwis.waterdata.usgs.gov/nwis/help/?read_file=stat&format=table}
+Imports data from NWIS web service. This function gets the
+data from here:
+\url{http://nwis.waterdata.usgs.gov/nwis/qwdata} A list of
+parameter codes can be found here:
+\url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} A list
+of statistic codes can be found here:
+\url{http://nwis.waterdata.usgs.gov/nwis/help/?read_file=stat&format=table}
 }
 \examples{
 siteNumber <- '01594440'
diff --git a/man/dataOverview.Rd b/man/dataOverview.Rd
index 6fe56a3ac2930bf546840bcbdb75fea354dadd3f..740a0591aee69a7e14ec3e27a316fbe36e299ac2 100644
--- a/man/dataOverview.Rd
+++ b/man/dataOverview.Rd
@@ -2,7 +2,7 @@
 \alias{dataOverview}
 \title{Data Overview for WRTDS}
 \usage{
-  dataOverview(localDaily = Daily, localSample = Sample)
+dataOverview(localDaily = Daily, localSample = Sample)
 }
 \arguments{
   \item{localDaily}{dataframe}
@@ -10,7 +10,7 @@
   \item{localSample}{dataframe}
 }
 \description{
-  Gives a summary of data to be used for WRTDS analysis
+Gives a summary of data to be used for WRTDS analysis
 }
 \examples{
 # These examples require an internet connection to run
@@ -19,7 +19,7 @@ exSample <- getSampleData('01594440','01075', '1985-01-01', '1985-03-31', intera
 dataOverview(localDaily = exDaily, localSample = exSample)
 }
 \seealso{
-  \code{\link{mergeReport}}
+\code{\link{mergeReport}}
 }
 \keyword{USGS}
 \keyword{WRTDS}
diff --git a/man/dataRetrieval-package.Rd b/man/dataRetrieval-package.Rd
index 055aa874443eceef6efd9efdc9fce3983d7e5c5a..ea978468281dbd65d3b6249d20785356ecb06e7e 100644
--- a/man/dataRetrieval-package.Rd
+++ b/man/dataRetrieval-package.Rd
@@ -3,33 +3,33 @@
 \alias{dataRetrieval-package}
 \title{Retrieval functions for USGS data}
 \description{
-  \tabular{ll}{ Package: \tab dataRetrieval\cr Type: \tab
-  Package\cr Version: \tab 1.2.1\cr Date: \tab
-  2012-12-31\cr License: \tab Unlimited for this package,
-  dependencies have more restrictive licensing.\cr
-  Copyright: \tab This software is in the public domain
-  because it contains materials that originally came from
-  the United States Geological Survey, an agency of the
-  United States Department of Interior. For more
-  information, see the official USGS copyright policy at
-  http://www.usgs.gov/visual-id/credit_usgs.html#copyright\cr
-  LazyLoad: \tab yes\cr }
+\tabular{ll}{ Package: \tab dataRetrieval\cr Type: \tab
+Package\cr Version: \tab 1.2.1\cr Date: \tab 2012-12-31\cr
+License: \tab Unlimited for this package, dependencies have
+more restrictive licensing.\cr Copyright: \tab This
+software is in the public domain because it contains
+materials that originally came from the United States
+Geological Survey, an agency of the United States
+Department of Interior. For more information, see the
+official USGS copyright policy at
+http://www.usgs.gov/visual-id/credit_usgs.html#copyright\cr
+LazyLoad: \tab yes\cr }
 }
 \details{
-  Collection of functions to help retrieve USGS data from
-  either web services or user provided data files.
+Collection of functions to help retrieve USGS data from
+either web services or user provided data files.
 }
 \author{
-  Robert M. Hirsch \email{rhirsch@usgs.gov}, Laura De Cicco
-  \email{ldecicco@usgs.gov}
+Robert M. Hirsch \email{rhirsch@usgs.gov}, Laura De Cicco
+\email{ldecicco@usgs.gov}
 }
 \references{
-  Hirsch, R. M., Moyer, D. L. and Archfield, S. A. (2010),
-  Weighted Regressions on Time, Discharge, and Season
-  (WRTDS), with an Application to Chesapeake Bay River
-  Inputs. JAWRA Journal of the American Water Resources
-  Association, 46: 857-880. doi:
-  10.1111/j.1752-1688.2010.00482.x
+Hirsch, R. M., Moyer, D. L. and Archfield, S. A. (2010),
+Weighted Regressions on Time, Discharge, and Season
+(WRTDS), with an Application to Chesapeake Bay River
+Inputs. JAWRA Journal of the American Water Resources
+Association, 46: 857-880. doi:
+10.1111/j.1752-1688.2010.00482.x
 }
 \keyword{data,}
 \keyword{retrieval}
diff --git a/man/dateFormatCheck.Rd b/man/dateFormatCheck.Rd
index dd75fee619a69001adad54bba538e9d5980ee496..c27c908fb22619e02e1277fa7688d9b2f24eee25 100644
--- a/man/dateFormatCheck.Rd
+++ b/man/dateFormatCheck.Rd
@@ -2,17 +2,17 @@
 \alias{dateFormatCheck}
 \title{dateFormatCheck}
 \usage{
-  dateFormatCheck(date)
+dateFormatCheck(date)
 }
 \arguments{
   \item{date}{string}
 }
 \value{
-  condition logical if TRUE,
+condition logical if TRUE,
 }
 \description{
-  Checks to see if format is YYYY-MM-DD. Also performs a
-  few other date checks.
+Checks to see if format is YYYY-MM-DD. Also performs a few
+other date checks.
 }
 \examples{
 date <- '1985-01-01'
diff --git a/man/formatCheckDate.Rd b/man/formatCheckDate.Rd
index 64c54b65061785ecf5741d3f1c4eac8c9ac3af0d..eaca3155e5c6aa3c4bf67c1564e95e2fb8ee4ed1 100644
--- a/man/formatCheckDate.Rd
+++ b/man/formatCheckDate.Rd
@@ -2,7 +2,7 @@
 \alias{formatCheckDate}
 \title{formatCheckDate}
 \usage{
-  formatCheckDate(Date, dateString, interactive = TRUE)
+formatCheckDate(Date, dateString, interactive = TRUE)
 }
 \arguments{
   \item{Date}{string}
@@ -15,12 +15,12 @@
   data checks.}
 }
 \value{
-  condition logical if TRUE,
+condition logical if TRUE,
 }
 \description{
-  Response to the date format checker.  If the date is not
-  formated correctly, it will give the user the opportunity
-  to correct, otherwise will create a warning.
+Response to the date format checker.  If the date is not
+formated correctly, it will give the user the opportunity
+to correct, otherwise will create a warning.
 }
 \examples{
 Date <- '1985-01-01'
diff --git a/man/formatCheckParameterCd.Rd b/man/formatCheckParameterCd.Rd
index a506bd85e0ba4eda3d47c926635ed44c98a33fb8..416b9dbaf73b4508e727439c8877c5d64b6cc126 100644
--- a/man/formatCheckParameterCd.Rd
+++ b/man/formatCheckParameterCd.Rd
@@ -2,7 +2,7 @@
 \alias{formatCheckParameterCd}
 \title{formatCheckParameterCd}
 \usage{
-  formatCheckParameterCd(ParameterCd, interactive = TRUE)
+formatCheckParameterCd(ParameterCd, interactive = TRUE)
 }
 \arguments{
   \item{ParameterCd}{string to check}
@@ -12,12 +12,12 @@
   data checks.}
 }
 \value{
-  ParameterCd string
+ParameterCd string
 }
 \description{
-  Checks that the parameter code is 5 digits. If it is
-  less, it will pad the string with zeros. If more, ask the
-  user to re-enter.
+Checks that the parameter code is 5 digits. If it is less,
+it will pad the string with zeros. If more, ask the user to
+re-enter.
 }
 \examples{
 pCode <- '01234'
diff --git a/man/formatCheckSiteNumber.Rd b/man/formatCheckSiteNumber.Rd
index 2f16232501e4729fb68393c7cbb60ff70116ad3b..fabd0d594e646a9953c069bd20958cfdca8d639b 100644
--- a/man/formatCheckSiteNumber.Rd
+++ b/man/formatCheckSiteNumber.Rd
@@ -2,7 +2,7 @@
 \alias{formatCheckSiteNumber}
 \title{formatCheckSiteNumber}
 \usage{
-  formatCheckSiteNumber(siteNumber, interactive = TRUE)
+formatCheckSiteNumber(siteNumber, interactive = TRUE)
 }
 \arguments{
   \item{siteNumber}{string to check}
@@ -12,15 +12,17 @@
   data checks.}
 }
 \value{
-  siteNumber string
+siteNumber string
 }
 \description{
-  Checks that the site code is 8 digits. If it is not 8
-  digits, it confirms with the user.
+Checks that the site code is at least 8 digits. If not, it
+confirms with the user.
 }
 \examples{
 site<- '01234567'
 formatCheckSiteNumber(site)
+site_incorrect <- '1234567'
+formatCheckSiteNumber(site_incorrect)
 }
 \keyword{WRTDS}
 \keyword{flow}
diff --git a/man/getDVData.Rd b/man/getDVData.Rd
index ecb58f4f9f3b6c61af010e3f3be8ed740efd8d0a..e4e5e188261b387317b45bfc3da9e4f312bf613b 100644
--- a/man/getDVData.Rd
+++ b/man/getDVData.Rd
@@ -2,8 +2,8 @@
 \alias{getDVData}
 \title{Import Daily Data for WRTDS}
 \usage{
-  getDVData(siteNumber, ParameterCd, StartDate, EndDate,
-    interactive = TRUE, convert = TRUE, format = "tsv")
+getDVData(siteNumber, ParameterCd, StartDate, EndDate, interactive = TRUE,
+  convert = TRUE, format = "tsv")
 }
 \arguments{
   \item{siteNumber}{string USGS site number.  This is
@@ -41,15 +41,15 @@
   expected. The default is "tsv".}
 }
 \value{
-  Daily dataframe
+Daily dataframe
 }
 \description{
-  Imports data from NWIS web service. This function gets
-  the data from here: \url{http://waterservices.usgs.gov/}
-  A list of parameter codes can be found here:
-  \url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} A list
-  of statistic codes can be found here:
-  \url{http://nwis.waterdata.usgs.gov/nwis/help/?read_file=stat&format=table}
+Imports data from NWIS web service. This function gets the
+data from here: \url{http://waterservices.usgs.gov/} A list
+of parameter codes can be found here:
+\url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} A list
+of statistic codes can be found here:
+\url{http://nwis.waterdata.usgs.gov/nwis/help/?read_file=stat&format=table}
 }
 \examples{
 # These examples require an internet connection to run
@@ -58,8 +58,7 @@ DailyCFS <- getDVData('01594440','00060', '1985-01-01', '1985-03-31',convert=FAL
 DailySuspSediment <- getDVData('01594440','80154', '1985-01-01', '1985-03-31')
 }
 \seealso{
-  \code{\link{retrieveNWISData}},
-  \code{\link{populateDaily}}
+\code{\link{retrieveNWISData}}, \code{\link{populateDaily}}
 }
 \keyword{USGS}
 \keyword{WRTDS}
diff --git a/man/getDailyDataFromFile.Rd b/man/getDailyDataFromFile.Rd
index 2c8ded37b9a18f130b42c18ecc9f4d3787a3c696..1c11d5872e340fc945998defbc74644eaafaa4a3 100644
--- a/man/getDailyDataFromFile.Rd
+++ b/man/getDailyDataFromFile.Rd
@@ -2,9 +2,8 @@
 \alias{getDailyDataFromFile}
 \title{Import Daily Data for WRTDS}
 \usage{
-  getDailyDataFromFile(filePath, fileName,
-    hasHeader = TRUE, separator = ",", qUnit = 1,
-    interactive = TRUE)
+getDailyDataFromFile(filePath, fileName, hasHeader = TRUE, separator = ",",
+  qUnit = 1, interactive = TRUE)
 }
 \arguments{
   \item{filePath}{string specifying the path to the file}
@@ -26,12 +25,11 @@
   data checks.}
 }
 \value{
-  Daily dataframe
+Daily dataframe
 }
 \description{
-  Imports data from a user-supplied file, and converts it
-  to a Daily data frame, appropriate for WRTDS
-  calculations.
+Imports data from a user-supplied file, and converts it to
+a Daily data frame, appropriate for WRTDS calculations.
 }
 \examples{
 # Examples of how to use getDailyDataFromFile:
diff --git a/man/getDataAvailability.Rd b/man/getDataAvailability.Rd
index 29f79bc3de6cb6b8da103aa493be93de13b5eeaa..db1119da6c0ad8626c6b171f1470681dbf4be8dc 100644
--- a/man/getDataAvailability.Rd
+++ b/man/getDataAvailability.Rd
@@ -2,7 +2,7 @@
 \alias{getDataAvailability}
 \title{USGS data availability}
 \usage{
-  getDataAvailability(siteNumber, interactive = TRUE)
+getDataAvailability(siteNumber, interactive = TRUE)
 }
 \arguments{
   \item{siteNumber}{string USGS site number.  This is
@@ -12,14 +12,14 @@
   If true, a progress indicator is printed to the console.}
 }
 \value{
-  retval dataframe with all information found in the
-  expanded site file
+retval dataframe with all information found in the expanded
+site file
 }
 \description{
-  Imports a table of available parameters, period of
-  record, and count. There is also an option to load the
-  long parameter names and additional information on the
-  parameters with longNames=TRUE.
+Imports a table of available parameters, period of record,
+and count. There is also an option to load the long
+parameter names and additional information on the
+parameters with longNames=TRUE.
 }
 \examples{
 # These examples require an internet connection to run
diff --git a/man/getDataFromFile.Rd b/man/getDataFromFile.Rd
index 7ec446f59216b6173dead3192e11d6cd46fb0a08..93b1c0c1c411b0ed2cae696cef18d556c8353aa3 100644
--- a/man/getDataFromFile.Rd
+++ b/man/getDataFromFile.Rd
@@ -2,8 +2,7 @@
 \alias{getDataFromFile}
 \title{Basic Data Import for Water Flow Data}
 \usage{
-  getDataFromFile(filePath, fileName, hasHeader = TRUE,
-    separator = ",")
+getDataFromFile(filePath, fileName, hasHeader = TRUE, separator = ",")
 }
 \arguments{
   \item{filePath}{string specifying the path to the file}
@@ -17,14 +16,14 @@
   cells}
 }
 \value{
-  retval dataframe with dateTime, value, and code columns
+retval dataframe with dateTime, value, and code columns
 }
 \description{
-  Imports data from user-supplied data file. Specifically
-  used to import water flow data for use in the WRTDS
-  package. For WRTDS usage, the first column is expected to
-  be dates, the second column measured values. The third
-  column is optional, it contains any remark codes.
+Imports data from user-supplied data file. Specifically
+used to import water flow data for use in the WRTDS
+package. For WRTDS usage, the first column is expected to
+be dates, the second column measured values. The third
+column is optional, it contains any remark codes.
 }
 \examples{
 # Examples of how to use getDataFromFile:
diff --git a/man/getMetaData.Rd b/man/getMetaData.Rd
index 91ae02d37af2334be85e06624148abed504efe14..74d12b932f23983320e81ba8fd338efd9e6a56b4 100644
--- a/man/getMetaData.Rd
+++ b/man/getMetaData.Rd
@@ -2,8 +2,7 @@
 \alias{getMetaData}
 \title{Import Metadata for USGS Data}
 \usage{
-  getMetaData(siteNumber = "", parameterCd = "",
-    interactive = TRUE)
+getMetaData(siteNumber = "", parameterCd = "", interactive = TRUE)
 }
 \arguments{
   \item{siteNumber}{string USGS site number.  This is
@@ -17,22 +16,22 @@
   data checks.}
 }
 \value{
-  INFO dataframe with agency, site, dateTime, value, and
-  code columns
+INFO dataframe with agency, site, dateTime, value, and code
+columns
 }
 \description{
-  Populates INFO data frame for WRTDS study.  If either
-  station number or parameter code supplied, imports data
-  about a particular USGS site from NWIS web service. This
-  function gets the data from here:
-  \url{http://waterservices.usgs.gov/} A list of parameter
-  codes can be found here:
-  \url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} If
-  either station number or parameter code is not supplied,
-  the user will be asked to input data. Additionally, the
-  user will be asked for: staAbbrev - station abbreviation,
-  will be used in naming output files and for structuring
-  batch jobs constitAbbrev - constitute abbreviation
+Populates INFO data frame for WRTDS study.  If either
+station number or parameter code supplied, imports data
+about a particular USGS site from NWIS web service. This
+function gets the data from here:
+\url{http://waterservices.usgs.gov/} A list of parameter
+codes can be found here:
+\url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} If
+either station number or parameter code is not supplied,
+the user will be asked to input data. Additionally, the
+user will be asked for: staAbbrev - station abbreviation,
+will be used in naming output files and for structuring
+batch jobs constitAbbrev - constitute abbreviation
 }
 \examples{
 # These examples require an internet connection to run
diff --git a/man/getParameterInfo.Rd b/man/getParameterInfo.Rd
index 2cfa2d1cad594c411b0ad17dde28ecb881046a1b..004b6fd27bc4736a0139514318e0797a57dec443 100644
--- a/man/getParameterInfo.Rd
+++ b/man/getParameterInfo.Rd
@@ -2,7 +2,7 @@
 \alias{getParameterInfo}
 \title{USGS Parameter Data Retrieval}
 \usage{
-  getParameterInfo(parameterCd, interactive = TRUE)
+getParameterInfo(parameterCd, interactive = TRUE)
 }
 \arguments{
   \item{parameterCd}{vector of USGS parameter codes.  This
@@ -13,15 +13,15 @@
   data checks.}
 }
 \value{
-  parameterData dataframe with all information from the
-  USGS about the particular parameter (usually code, name,
-  short name, units, and CAS registry numbers)
+parameterData dataframe with all information from the USGS
+about the particular parameter (usually code, name, short
+name, units, and CAS registry numbers)
 }
 \description{
-  Imports data from NWIS about meaured parameter based on
-  user-supplied parameter code. This function gets the data
-  from here:
-  \url{http://nwis.waterdata.usgs.gov/nwis/pmcodes}
+Imports data from NWIS about meaured parameter based on
+user-supplied parameter code. This function gets the data
+from here:
+\url{http://nwis.waterdata.usgs.gov/nwis/pmcodes}
 }
 \examples{
 # These examples require an internet connection to run
diff --git a/man/getQWData.Rd b/man/getQWData.Rd
index 70f7885ccba58ef2dd0f5a29dcd5e4d5f2481bbf..eb2d7f3745b0c5653b43b05b6fb2e81500d90536 100644
--- a/man/getQWData.Rd
+++ b/man/getQWData.Rd
@@ -2,8 +2,7 @@
 \alias{getQWData}
 \title{Data Import for USGS NWIS Water Quality Data}
 \usage{
-  getQWData(siteNumber, ParameterCd, StartDate, EndDate,
-    interactive = TRUE)
+getQWData(siteNumber, ParameterCd, StartDate, EndDate, interactive = TRUE)
 }
 \arguments{
   \item{siteNumber}{string USGS site number.  This is
@@ -26,19 +25,19 @@
   data checks.}
 }
 \value{
-  retval dataframe with first column dateTime, and at least
-  one qualifier and value columns (subsequent
-  qualifier/value columns could follow depending on
-  requested parameter codes)
+retval dataframe with first column dateTime, and at least
+one qualifier and value columns (subsequent qualifier/value
+columns could follow depending on requested parameter
+codes)
 }
 \description{
-  Imports and processes data from NWIS web service. This
-  function gets the data from here:
-  \url{http://www.waterqualitydata.us} A list of parameter
-  codes can be found here:
-  \url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} A list
-  of statistic codes can be found here:
-  \url{http://nwis.waterdata.usgs.gov/nwis/help/?read_file=stat&format=table}
+Imports and processes data from NWIS web service. This
+function gets the data from here:
+\url{http://www.waterqualitydata.us} A list of parameter
+codes can be found here:
+\url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} A list
+of statistic codes can be found here:
+\url{http://nwis.waterdata.usgs.gov/nwis/help/?read_file=stat&format=table}
 }
 \examples{
 # These examples require an internet connection to run
diff --git a/man/getQWDataFromFile.Rd b/man/getQWDataFromFile.Rd
index 1303449e53bd8b0d45a379c661ae17f392bf6d38..2822df05424b36257a448fd9190fd35b89688588 100644
--- a/man/getQWDataFromFile.Rd
+++ b/man/getQWDataFromFile.Rd
@@ -2,8 +2,7 @@
 \alias{getQWDataFromFile}
 \title{Basic Data Import}
 \usage{
-  getQWDataFromFile(filePath, fileName, hasHeader = TRUE,
-    separator = ",")
+getQWDataFromFile(filePath, fileName, hasHeader = TRUE, separator = ",")
 }
 \arguments{
   \item{filePath}{string specifying the path to the file}
@@ -17,16 +16,16 @@
   cells}
 }
 \value{
-  retval dataframe
+retval dataframe
 }
 \description{
-  Imports data from user-supplied data file. Specifically
-  used to import water quality data for use in the WRTDS
-  package. For WRTDS usage, the first column is expected to
-  be dates, the second column remarks (specifically < if
-  censored data), and the third column is measured values.
-  There can be additional columns of data, for each column
-  of data, there should be a remark column preceeding.
+Imports data from user-supplied data file. Specifically
+used to import water quality data for use in the WRTDS
+package. For WRTDS usage, the first column is expected to
+be dates, the second column remarks (specifically < if
+censored data), and the third column is measured values.
+There can be additional columns of data, for each column of
+data, there should be a remark column preceeding.
 }
 \examples{
 # Examples of how to use getQWDataFromFile:
diff --git a/man/getRDB1Data.Rd b/man/getRDB1Data.Rd
index 6777c95a5b7ebe752f727a1f2b0244d9aee59aab..f272321bbcc1bbbf2ecbf961a1cb6c2405cb32b7 100644
--- a/man/getRDB1Data.Rd
+++ b/man/getRDB1Data.Rd
@@ -2,7 +2,7 @@
 \alias{getRDB1Data}
 \title{Function to return data from the NWIS RDB 1.0 format}
 \usage{
-  getRDB1Data(obs_url, asDateTime = FALSE)
+getRDB1Data(obs_url, asDateTime = FALSE)
 }
 \arguments{
   \item{obs_url}{string containing the url for the
@@ -12,14 +12,14 @@
   as POSIXct, if FALSE, Date}
 }
 \value{
-  data a data frame containing columns agency, site,
-  dateTime, values, and remark codes for all requested
-  combinations
+data a data frame containing columns agency, site,
+dateTime, values, and remark codes for all requested
+combinations
 }
 \description{
-  This function accepts a url parameter that already
-  contains the desired NWIS site, parameter code,
-  statistic, startdate and enddate.
+This function accepts a url parameter that already contains
+the desired NWIS site, parameter code, statistic, startdate
+and enddate.
 }
 \examples{
 sites <- "02177000"
diff --git a/man/getRawQWData.Rd b/man/getRawQWData.Rd
index b1aaccf3f4ba98c5ba10aa23757614e4391ceb92..585aa3635dcf7502ef2aab3c3224e21daf89c2e3 100644
--- a/man/getRawQWData.Rd
+++ b/man/getRawQWData.Rd
@@ -2,8 +2,7 @@
 \alias{getRawQWData}
 \title{Raw Data Import for USGS NWIS Water Quality Data}
 \usage{
-  getRawQWData(siteNumber, ParameterCd, StartDate, EndDate,
-    interactive = TRUE)
+getRawQWData(siteNumber, ParameterCd, StartDate, EndDate, interactive = TRUE)
 }
 \arguments{
   \item{siteNumber}{string USGS site number.  This is
@@ -24,18 +23,18 @@
   data checks.}
 }
 \value{
-  retval dataframe with first column dateTime, and at least
-  one qualifier and value columns (subsequent
-  qualifier/value columns could follow depending on
-  requested parameter codes)
+retval dataframe with first column dateTime, and at least
+one qualifier and value columns (subsequent qualifier/value
+columns could follow depending on requested parameter
+codes)
 }
 \description{
-  Imports data from NWIS web service. This function gets
-  the data from here: \url{http://www.waterqualitydata.us}
-  A list of parameter codes can be found here:
-  \url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} A list
-  of statistic codes can be found here:
-  \url{http://nwis.waterdata.usgs.gov/nwis/help/?read_file=stat&format=table}
+Imports data from NWIS web service. This function gets the
+data from here: \url{http://www.waterqualitydata.us} A list
+of parameter codes can be found here:
+\url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} A list
+of statistic codes can be found here:
+\url{http://nwis.waterdata.usgs.gov/nwis/help/?read_file=stat&format=table}
 }
 \examples{
 # These examples require an internet connection to run
diff --git a/man/getSTORETSampleData.Rd b/man/getSTORETSampleData.Rd
index 5fe9a4d79738ad6db7a43422ef8e43a398527567..80ddabea2676f3f7e50c37e39b86450a53baca1a 100644
--- a/man/getSTORETSampleData.Rd
+++ b/man/getSTORETSampleData.Rd
@@ -2,8 +2,8 @@
 \alias{getSTORETSampleData}
 \title{Import Sample Data for WRTDS}
 \usage{
-  getSTORETSampleData(siteNumber, characteristicName,
-    StartDate, EndDate, interactive = TRUE)
+getSTORETSampleData(siteNumber, characteristicName, StartDate, EndDate,
+  interactive = TRUE)
 }
 \arguments{
   \item{siteNumber}{string site number.  If USGS, it should
@@ -22,18 +22,18 @@
   data checks.}
 }
 \value{
-  Sample dataframe
+Sample dataframe
 }
 \description{
-  Imports data from NWIS web service. This function gets
-  the data from here: \url{http://qwwebservices.usgs.gov/}
-  A list of parameter codes can be found here:
-  \url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} A list
-  of statistic codes can be found here:
-  \url{http://nwis.waterdata.usgs.gov/nwis/help/?read_file=stat&format=table}
-  For raw data, use getQWData.  This function will retrieve
-  the raw data, and compress it (summing constituents). See
-  chapter 7 of the EGRET user guide for more details.
+Imports data from NWIS web service. This function gets the
+data from here: \url{http://qwwebservices.usgs.gov/} A list
+of parameter codes can be found here:
+\url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} A list
+of statistic codes can be found here:
+\url{http://nwis.waterdata.usgs.gov/nwis/help/?read_file=stat&format=table}
+For raw data, use getQWData.  This function will retrieve
+the raw data, and compress it (summing constituents). See
+chapter 7 of the EGRET user guide for more details.
 }
 \examples{
 # These examples require an internet connection to run
@@ -41,8 +41,8 @@ Sample_01075 <- getSTORETSampleData('USGS-01594440','Chloride', '', '')
 Sample_All <- getSTORETSampleData('WIDNR_WQX-10032762','Specific conductance', '', '')
 }
 \seealso{
-  \code{\link{compressData}},
-  \code{\link{populateSampleColumns}}
+\code{\link{compressData}},
+\code{\link{populateSampleColumns}}
 }
 \keyword{USGS}
 \keyword{WRTDS}
diff --git a/man/getSampleData.Rd b/man/getSampleData.Rd
index 51fa28ff1bfdfa33f6b2a1b347002e4153e8dd5d..a51361c63a3ab4e14a04ad48e8fa9c98c061213d 100644
--- a/man/getSampleData.Rd
+++ b/man/getSampleData.Rd
@@ -2,8 +2,7 @@
 \alias{getSampleData}
 \title{Import Sample Data for WRTDS}
 \usage{
-  getSampleData(siteNumber, ParameterCd, StartDate,
-    EndDate, interactive = TRUE)
+getSampleData(siteNumber, ParameterCd, StartDate, EndDate, interactive = TRUE)
 }
 \arguments{
   \item{siteNumber}{string USGS site number.  This is
@@ -23,19 +22,19 @@
   data checks.}
 }
 \value{
-  Sample dataframe
+Sample dataframe
 }
 \description{
-  Imports data from NWIS web service. This function gets
-  the data from here:
-  \url{http://nwis.waterdata.usgs.gov/nwis/qwdata/} A list
-  of parameter codes can be found here:
-  \url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} A list
-  of statistic codes can be found here:
-  \url{http://nwis.waterdata.usgs.gov/nwis/help/?read_file=stat&format=table}
-  For raw data, use getQWData.  This function will retrieve
-  the raw data, and compress it (summing constituents). See
-  section 3.4 of the vignette for more details.
+Imports data from NWIS web service. This function gets the
+data from here:
+\url{http://nwis.waterdata.usgs.gov/nwis/qwdata/} A list of
+parameter codes can be found here:
+\url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} A list
+of statistic codes can be found here:
+\url{http://nwis.waterdata.usgs.gov/nwis/help/?read_file=stat&format=table}
+For raw data, use getQWData.  This function will retrieve
+the raw data, and compress it (summing constituents). See
+section 3.4 of the vignette for more details.
 }
 \examples{
 # These examples require an internet connection to run
@@ -44,8 +43,8 @@ Sample_All <- getSampleData('05114000','00915;00931', '1985-01-01', '1985-03-31'
 Sample_Select <- getSampleData('05114000','00915;00931', '', '')
 }
 \seealso{
-  \code{\link{compressData}},
-  \code{\link{populateSampleColumns}}
+\code{\link{compressData}},
+\code{\link{populateSampleColumns}}
 }
 \keyword{USGS}
 \keyword{WRTDS}
diff --git a/man/getSampleDataFromFile.Rd b/man/getSampleDataFromFile.Rd
index 9ab9723ca0fc1518b3bd5d724b7adcf6a7861a01..143bdb3843ff98bc8ba7362d5ae66956073fd1e2 100644
--- a/man/getSampleDataFromFile.Rd
+++ b/man/getSampleDataFromFile.Rd
@@ -2,8 +2,8 @@
 \alias{getSampleDataFromFile}
 \title{Import Sample Data for WRTDS}
 \usage{
-  getSampleDataFromFile(filePath, fileName,
-    hasHeader = TRUE, separator = ",", interactive = TRUE)
+getSampleDataFromFile(filePath, fileName, hasHeader = TRUE, separator = ",",
+  interactive = TRUE)
 }
 \arguments{
   \item{filePath}{string specifying the path to the file}
@@ -21,13 +21,13 @@
   data checks.}
 }
 \value{
-  Sample dataframe
+Sample dataframe
 }
 \description{
-  Imports data from a user-supplied file, and converts it
-  to a Sample data frame (including summing multiple
-  constituents), appropriate for WRTDS calculations. See
-  section 3.4 of the vignette for more details.
+Imports data from a user-supplied file, and converts it to
+a Sample data frame (including summing multiple
+constituents), appropriate for WRTDS calculations. See
+section 3.4 of the vignette for more details.
 }
 \examples{
 # Examples of how to use getSampleDataFromFile:
diff --git a/man/getSiteFileData.Rd b/man/getSiteFileData.Rd
index 56f3fdff84903dc5f704b46179269f3660fb5867..c71037b80492153e6bbfc08f223f56d13df77072 100644
--- a/man/getSiteFileData.Rd
+++ b/man/getSiteFileData.Rd
@@ -2,7 +2,7 @@
 \alias{getSiteFileData}
 \title{USGS Site File Data Retrieval}
 \usage{
-  getSiteFileData(siteNumber = "", interactive = TRUE)
+getSiteFileData(siteNumber = "", interactive = TRUE)
 }
 \arguments{
   \item{siteNumber}{string USGS site number.  This is
@@ -13,12 +13,12 @@
   data checks.}
 }
 \value{
-  retval dataframe with all information found in the
-  expanded site file
+retval dataframe with all information found in the expanded
+site file
 }
 \description{
-  Imports data from USGS site file site. This function gets
-  data from here: \url{http://waterservices.usgs.gov/}
+Imports data from USGS site file site. This function gets
+data from here: \url{http://waterservices.usgs.gov/}
 }
 \examples{
 # These examples require an internet connection to run
diff --git a/man/getWQPData.Rd b/man/getWQPData.Rd
index a3b275d477aa664bc684d798eb3b33d64ddcf9f5..4ae5b2b914b749a76fbdf5476f162799333ddeaa 100644
--- a/man/getWQPData.Rd
+++ b/man/getWQPData.Rd
@@ -2,8 +2,8 @@
 \alias{getWQPData}
 \title{Data Import from Water Quality Portal}
 \usage{
-  getWQPData(siteNumber, characteristicName, StartDate,
-    EndDate, interactive = TRUE)
+getWQPData(siteNumber, characteristicName, StartDate, EndDate,
+  interactive = TRUE)
 }
 \arguments{
   \item{siteNumber}{string site number.  If USGS, it should
@@ -22,21 +22,20 @@
   data checks.}
 }
 \value{
-  retval dataframe with first column dateTime, and at least
-  one qualifier and value columns (subsequent
-  qualifier/value columns could follow depending on
-  requested parameter codes)
+retval dataframe with first column dateTime, and at least
+one qualifier and value columns (subsequent qualifier/value
+columns could follow depending on requested parameter
+codes)
 }
 \description{
-  Imports data from Water Quality Portal web service. This
-  function gets the data from here:
-  \url{http://www.waterqualitydata.us}. This function is
-  more general than getQWData because it allows for other
-  agencies rather than the USGS.  Therefore, the 5-digit
-  parameter code cannot be used. Instead, this function
-  uses characteristicName.  A complete list can be found
-  here
-  \url{http://www.waterqualitydata.us/Codes/Characteristicname}
+Imports data from Water Quality Portal web service. This
+function gets the data from here:
+\url{http://www.waterqualitydata.us}. This function is more
+general than getQWData because it allows for other agencies
+rather than the USGS.  Therefore, the 5-digit parameter
+code cannot be used. Instead, this function uses
+characteristicName.  A complete list can be found here
+\url{http://www.waterqualitydata.us/Codes/Characteristicname}
 }
 \examples{
 # These examples require an internet connection to run
diff --git a/man/getWaterML1Data.Rd b/man/getWaterML1Data.Rd
index 5f62dc79ab951e77d2905b2a4d2f9d4de1046c8c..8e5ab86f928a852ebc3666f31f94d2430fab90a8 100644
--- a/man/getWaterML1Data.Rd
+++ b/man/getWaterML1Data.Rd
@@ -2,21 +2,21 @@
 \alias{getWaterML1Data}
 \title{Function to return data from the NWISWeb WaterML1.1 service}
 \usage{
-  getWaterML1Data(obs_url)
+getWaterML1Data(obs_url)
 }
 \arguments{
   \item{obs_url}{string containing the url for the
   retrieval}
 }
 \value{
-  mergedDF a data frame containing columns agency, site,
-  dateTime, values, and remark codes for all requested
-  combinations
+mergedDF a data frame containing columns agency, site,
+dateTime, values, and remark codes for all requested
+combinations
 }
 \description{
-  This function accepts a url parameter that already
-  contains the desired NWIS site, parameter code,
-  statistic, startdate and enddate.
+This function accepts a url parameter that already contains
+the desired NWIS site, parameter code, statistic, startdate
+and enddate.
 }
 \examples{
 url <- "http://waterservices.usgs.gov/nwis/dv/?format=waterml,1.1&sites="
diff --git a/man/getWaterML2Data.Rd b/man/getWaterML2Data.Rd
index 0c747e83688d3d298d09a95f8f61be2809265d1d..ee6372c47ff03753e45acb6c4260f2448a7a5366 100644
--- a/man/getWaterML2Data.Rd
+++ b/man/getWaterML2Data.Rd
@@ -2,20 +2,20 @@
 \alias{getWaterML2Data}
 \title{Function to return data from the WaterML2 data}
 \usage{
-  getWaterML2Data(obs_url)
+getWaterML2Data(obs_url)
 }
 \arguments{
   \item{obs_url}{string containing the url for the
   retrieval}
 }
 \value{
-  mergedDF a data frame containing columns agency, site,
-  dateTime, values, and remark codes for all requested
-  combinations
+mergedDF a data frame containing columns agency, site,
+dateTime, values, and remark codes for all requested
+combinations
 }
 \description{
-  This function accepts a url parameter for a WaterML2
-  getObservation
+This function accepts a url parameter for a WaterML2
+getObservation
 }
 \examples{
 URL <- "http://webvastage6.er.usgs.gov/ogc-swie/wml2/dv/sos?request=GetObservation&featureID=435601087432701&observedProperty=00045&beginPosition=2012-01-01&offering=Sum"
diff --git a/man/mergeReport.Rd b/man/mergeReport.Rd
index f66466308fd52d95f367657fb9bddeb9162702c2..120ef00b2bdec36247080c0cae2239db5ee68746 100644
--- a/man/mergeReport.Rd
+++ b/man/mergeReport.Rd
@@ -2,8 +2,7 @@
 \alias{mergeReport}
 \title{Merge Sample and Daily Data for WRTDS}
 \usage{
-  mergeReport(localDaily = Daily, localSample = Sample,
-    interactive = TRUE)
+mergeReport(localDaily = Daily, localSample = Sample, interactive = TRUE)
 }
 \arguments{
   \item{localDaily}{dataframe containing the daily data,
@@ -17,11 +16,11 @@
   data checks.}
 }
 \value{
-  newSample dataframe with merged flow information
+newSample dataframe with merged flow information
 }
 \description{
-  Merges the flow data from the daily record into the
-  sample record.
+Merges the flow data from the daily record into the sample
+record.
 }
 \examples{
 # These examples require an internet connection to run
@@ -30,8 +29,8 @@ Sample <- getSampleData('01594440','01075', '1985-01-01', '1985-03-31')
 Sample <- mergeReport()
 }
 \seealso{
-  \code{\link{getDVData}},
-  \code{\link{populateSampleColumns}}
+\code{\link{getDVData}},
+\code{\link{populateSampleColumns}}
 }
 \keyword{USGS}
 \keyword{WRTDS}
diff --git a/man/padVariable.Rd b/man/padVariable.Rd
index cf3aee545f2616faa1b17dcc20135c43ea3b97f8..78b7545f4a083114d0e73cf95593b6b9bb059cb6 100644
--- a/man/padVariable.Rd
+++ b/man/padVariable.Rd
@@ -2,7 +2,7 @@
 \alias{padVariable}
 \title{Pad string with leading zeros}
 \usage{
-  padVariable(x, padTo)
+padVariable(x, padTo)
 }
 \arguments{
   \item{x}{string}
@@ -10,11 +10,11 @@
   \item{padTo}{number Final desired length of the string}
 }
 \value{
-  x string returned with leading zeros
+x string returned with leading zeros
 }
 \description{
-  Function to pad a string with leading zeros. Useful for
-  parameter codes and USGS site IDs.
+Function to pad a string with leading zeros. Useful for
+parameter codes and USGS site IDs.
 }
 \examples{
 pCode <- '10'
diff --git a/man/parameterCdFile.Rd b/man/parameterCdFile.Rd
index d6a4416372af38f5db25592a2026d97b8653f192..5fa4a02f9eab8bdef7bc0dc32ef97996561b7f60 100644
--- a/man/parameterCdFile.Rd
+++ b/man/parameterCdFile.Rd
@@ -3,10 +3,9 @@
 \alias{parameterCdFile}
 \title{List of USGS parameter codes}
 \description{
-  Complete list of USGS parameter codes as of September 25,
-  2013.
+Complete list of USGS parameter codes as of September 25,
+2013.
 }
 \keyword{USGS}
-\keyword{datasets}
 \keyword{parameterCd}
 
diff --git a/man/populateConcentrations.Rd b/man/populateConcentrations.Rd
index 14b30908b3a1b6f687a8b641c60d9d0a00c87414..4e17c04523c345c2e54fb39ca176fa3cc3b0f415 100644
--- a/man/populateConcentrations.Rd
+++ b/man/populateConcentrations.Rd
@@ -2,18 +2,17 @@
 \alias{populateConcentrations}
 \title{Populate Concentration Columns}
 \usage{
-  populateConcentrations(rawData)
+populateConcentrations(rawData)
 }
 \arguments{
   \item{rawData}{vector with value and code columns}
 }
 \value{
-  concentrationColumns dataframe
+concentrationColumns dataframe
 }
 \description{
-  Creates ConcLow, ConcHigh, Uncen (0 if censored, 1 if
-  uncensored) columns for Sample data frame for WRTDS
-  study.
+Creates ConcLow, ConcHigh, Uncen (0 if censored, 1 if
+uncensored) columns for Sample data frame for WRTDS study.
 }
 \examples{
 code <- c("","<","")
diff --git a/man/populateDaily.Rd b/man/populateDaily.Rd
index 17b7ddd74e351dadf310ac4ee1cfb9747b4d99b8..ae00ff554a937fd3bc398aab2fe408e9aea7b0f9 100644
--- a/man/populateDaily.Rd
+++ b/man/populateDaily.Rd
@@ -2,7 +2,7 @@
 \alias{populateDaily}
 \title{Populate Daily data frame}
 \usage{
-  populateDaily(rawData, qConvert, interactive = TRUE)
+populateDaily(rawData, qConvert, interactive = TRUE)
 }
 \arguments{
   \item{rawData}{dataframe contains at least dateTime,
@@ -16,12 +16,12 @@
   data checks.}
 }
 \value{
-  dataframe Daily
+dataframe Daily
 }
 \description{
-  Using raw data that has at least dateTime, value, code,
-  populates the rest of the basic Daily data frame used in
-  WRTDS
+Using raw data that has at least dateTime, value, code,
+populates the rest of the basic Daily data frame used in
+WRTDS
 }
 \examples{
 dateTime <- c('1985-01-01', '1985-01-02', '1985-01-03')
@@ -31,7 +31,7 @@ dataInput <- data.frame(dateTime, value, code, stringsAsFactors=FALSE)
 Daily <- populateDaily(dataInput, 2)
 }
 \author{
-  Robert M. Hirsch \email{rhirsch@usgs.gov}
+Robert M. Hirsch \email{rhirsch@usgs.gov}
 }
 \keyword{WRTDS}
 \keyword{flow}
diff --git a/man/populateDateColumns.Rd b/man/populateDateColumns.Rd
index 0db70e8dac1c8a0c0d483d8076dbbd2441b6e9c1..e74551f2a57e471a76be2a595764ed047765a87a 100644
--- a/man/populateDateColumns.Rd
+++ b/man/populateDateColumns.Rd
@@ -2,16 +2,16 @@
 \alias{populateDateColumns}
 \title{Populate Date Columns}
 \usage{
-  populateDateColumns(rawData)
+populateDateColumns(rawData)
 }
 \arguments{
   \item{rawData}{vector with dateTime}
 }
 \value{
-  DateFrame dataframe
+DateFrame dataframe
 }
 \description{
-  Creates various date columns for WRTDS study.
+Creates various date columns for WRTDS study.
 }
 \examples{
 dateTime <- c('1984-01-01', '1985-01-02', '1986-01-03')
diff --git a/man/populateParameterINFO.Rd b/man/populateParameterINFO.Rd
index 695a65d08d98375adf4e338e4a7702e89c251143..2571ef3858622ab4c8c5d0d7c6f3cebcfc11907d 100644
--- a/man/populateParameterINFO.Rd
+++ b/man/populateParameterINFO.Rd
@@ -2,8 +2,7 @@
 \alias{populateParameterINFO}
 \title{Populate Parameter Information Columns}
 \usage{
-  populateParameterINFO(parameterCd, localINFO = INFO,
-    interactive = TRUE)
+populateParameterINFO(parameterCd, localINFO = INFO, interactive = TRUE)
 }
 \arguments{
   \item{localINFO}{dataframe with value and code columns.
@@ -16,11 +15,11 @@
   data checks.}
 }
 \value{
-  localINFO dataframe
+localINFO dataframe
 }
 \description{
-  Populates INFO data frame with additional user-supplied
-  information concerning the measured parameter.
+Populates INFO data frame with additional user-supplied
+information concerning the measured parameter.
 }
 \examples{
 #This example requires an internet connection to run
diff --git a/man/populateSampleColumns.Rd b/man/populateSampleColumns.Rd
index e7a10161bd6984ec08eac0d989f9470368cd116f..d22334a22df295fb7cbe0741a830b3e1b7165f57 100644
--- a/man/populateSampleColumns.Rd
+++ b/man/populateSampleColumns.Rd
@@ -2,18 +2,18 @@
 \alias{populateSampleColumns}
 \title{Populate Sample Columns}
 \usage{
-  populateSampleColumns(rawData)
+populateSampleColumns(rawData)
 }
 \arguments{
   \item{rawData}{dataframe with dateTime, ConcLow,
   ConcHigh, Uncen}
 }
 \value{
-  Sample2 dataframe
+Sample2 dataframe
 }
 \description{
-  Creates ConcAve and ConcLow based on Uncen. Removes any
-  samples with NA values in ConcHigh
+Creates ConcAve and ConcLow based on Uncen. Removes any
+samples with NA values in ConcHigh
 }
 \examples{
 dateTime <- c('1985-01-01', '1985-01-02', '1985-01-03')
diff --git a/man/populateSiteINFO.Rd b/man/populateSiteINFO.Rd
index ac90811d19a6ba630d697f101d24b3bba1f015f6..7095cf68837e6effc1bf67142ddb56eafc8804b0 100644
--- a/man/populateSiteINFO.Rd
+++ b/man/populateSiteINFO.Rd
@@ -2,7 +2,7 @@
 \alias{populateSiteINFO}
 \title{Populate Site Information Columns}
 \usage{
-  populateSiteINFO(INFO, siteNumber, interactive = TRUE)
+populateSiteINFO(INFO, siteNumber, interactive = TRUE)
 }
 \arguments{
   \item{INFO}{dataframe with value and code columns}
@@ -14,12 +14,12 @@
   data checks.}
 }
 \value{
-  INFO dataframe
+INFO dataframe
 }
 \description{
-  Populates INFO data frame with additional user-supplied
-  information. Also removes fields not related to WRTDS
-  study.
+Populates INFO data frame with additional user-supplied
+information. Also removes fields not related to WRTDS
+study.
 }
 \examples{
 #This example requires an internet connection to run
diff --git a/man/processQWData.Rd b/man/processQWData.Rd
index 660c8bb571bcef093ad463a30d4d779727da1c13..8c3d83fd8fbb7e759bab0dfacb57c8b988969a1f 100644
--- a/man/processQWData.Rd
+++ b/man/processQWData.Rd
@@ -2,23 +2,23 @@
 \alias{processQWData}
 \title{Processing of USGS NWIS Water Quality Data}
 \usage{
-  processQWData(data)
+processQWData(data)
 }
 \arguments{
   \item{data}{dataframe from}
 }
 \value{
-  data dataframe with first column dateTime, and at least
-  one qualifier and value columns (subsequent
-  qualifier/value columns could follow depending on the
-  number of parameter codes)
+data dataframe with first column dateTime, and at least one
+qualifier and value columns (subsequent qualifier/value
+columns could follow depending on the number of parameter
+codes)
 }
 \description{
-  Processes water quality portal data. This function looks
-  at detection limit and detection conditions to determine
-  if a value is left censored or not. Censored values are
-  given the qualifier "<".  The dataframe is also converted
-  from a long to wide format.
+Processes water quality portal data. This function looks at
+detection limit and detection conditions to determine if a
+value is left censored or not. Censored values are given
+the qualifier "<".  The dataframe is also converted from a
+long to wide format.
 }
 \examples{
 # These examples require an internet connection to run
diff --git a/man/removeDuplicates.Rd b/man/removeDuplicates.Rd
index a68826fd301415d60465fce1001c5167cbe59219..979f6a3252d165c5317c092a07728d7a7c1b83b9 100644
--- a/man/removeDuplicates.Rd
+++ b/man/removeDuplicates.Rd
@@ -2,19 +2,19 @@
 \alias{removeDuplicates}
 \title{Remove Duplicates}
 \usage{
-  removeDuplicates(localSample = Sample)
+removeDuplicates(localSample = Sample)
 }
 \arguments{
   \item{localSample}{dataframe with at least DecYear and
   ConcHigh, default name is Sample}
 }
 \value{
-  Sample1 dataframe
+Sample1 dataframe
 }
 \description{
-  Removes observations from the data frame Sample when the
-  observation has the identical date and value as another
-  observation
+Removes observations from the data frame Sample when the
+observation has the identical date and value as another
+observation
 }
 \examples{
 DecYear <- c('1985.01', '1985.01', '1985.02', '1985.02', '1985.03')
diff --git a/man/renameColumns.Rd b/man/renameColumns.Rd
index 2ed426adfd8e344186d20be8211cc1ee62d1546c..22bb81cedcb824ec6dea8a581edcc28ba49ecd3e 100644
--- a/man/renameColumns.Rd
+++ b/man/renameColumns.Rd
@@ -2,17 +2,17 @@
 \alias{renameColumns}
 \title{renameColumns}
 \usage{
-  renameColumns(rawData)
+renameColumns(rawData)
 }
 \arguments{
   \item{rawData}{dataframe returned from retrieval
   functions}
 }
 \value{
-  rawData dataframe with improved column names
+rawData dataframe with improved column names
 }
 \description{
-  Rename columns coming back from NWIS data retrievals
+Rename columns coming back from NWIS data retrievals
 }
 \examples{
 # This example requires an internet connection to run
diff --git a/man/retrieveNWISData.Rd b/man/retrieveNWISData.Rd
index bfcd0d82d3684f4687c36973b2b89ec992d7057b..27a746ce0470fc59b2c87d885969539d6a6fa2a2 100644
--- a/man/retrieveNWISData.Rd
+++ b/man/retrieveNWISData.Rd
@@ -2,9 +2,8 @@
 \alias{retrieveNWISData}
 \title{Raw Data Import for USGS NWIS Data}
 \usage{
-  retrieveNWISData(siteNumber, ParameterCd, StartDate,
-    EndDate, StatCd = "00003", format = "tsv",
-    interactive = TRUE)
+retrieveNWISData(siteNumber, ParameterCd, StartDate, EndDate,
+  StatCd = "00003", format = "tsv", interactive = TRUE)
 }
 \arguments{
   \item{siteNumber}{string USGS site number.  This is
@@ -38,16 +37,16 @@
   data checks.}
 }
 \value{
-  data dataframe with agency, site, dateTime, value, and
-  code columns
+data dataframe with agency, site, dateTime, value, and code
+columns
 }
 \description{
-  Imports data from NWIS web service. This function gets
-  the data from here: \url{http://waterservices.usgs.gov/}
-  A list of parameter codes can be found here:
-  \url{http://help.waterdata.usgs.gov/codes-and-parameters/parameters}
-  A list of statistic codes can be found here:
-  \url{http://help.waterdata.usgs.gov/code/stat_code_query?fmt=html}
+Imports data from NWIS web service. This function gets the
+data from here: \url{http://waterservices.usgs.gov/} A list
+of parameter codes can be found here:
+\url{http://help.waterdata.usgs.gov/codes-and-parameters/parameters}
+A list of statistic codes can be found here:
+\url{http://help.waterdata.usgs.gov/code/stat_code_query?fmt=html}
 }
 \examples{
 # These examples require an internet connection to run
diff --git a/man/retrieveNWISqwData.Rd b/man/retrieveNWISqwData.Rd
index 40903e1e889a3b73361054a10a881efd0253cacf..714521c4b57c7355867c60fdd306771665a5a4e9 100644
--- a/man/retrieveNWISqwData.Rd
+++ b/man/retrieveNWISqwData.Rd
@@ -2,8 +2,7 @@
 \alias{retrieveNWISqwData}
 \title{Raw Data Import for USGS NWIS QW Data}
 \usage{
-  retrieveNWISqwData(siteNumber, pCodes, startDate,
-    endDate, interactive = TRUE)
+retrieveNWISqwData(siteNumber, pCodes, startDate, endDate, interactive = TRUE)
 }
 \arguments{
   \item{siteNumber}{string or vector of strings USGS site
@@ -23,17 +22,17 @@
   data checks.}
 }
 \value{
-  data dataframe with agency, site, dateTime, value, and
-  code columns
+data dataframe with agency, site, dateTime, value, and code
+columns
 }
 \description{
-  Imports data from NWIS web service. This function gets
-  the data from here:
-  \url{http://nwis.waterdata.usgs.gov/nwis/qwdata} A list
-  of parameter codes can be found here:
-  \url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} A list
-  of statistic codes can be found here:
-  \url{http://nwis.waterdata.usgs.gov/nwis/help/?read_file=stat&format=table}
+Imports data from NWIS web service. This function gets the
+data from here:
+\url{http://nwis.waterdata.usgs.gov/nwis/qwdata} A list of
+parameter codes can be found here:
+\url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} A list
+of statistic codes can be found here:
+\url{http://nwis.waterdata.usgs.gov/nwis/help/?read_file=stat&format=table}
 }
 \examples{
 # These examples require an internet connection to run
diff --git a/man/retrieveUnitNWISData.Rd b/man/retrieveUnitNWISData.Rd
index 05e4bd29288ce6e2318022fa2f8bba1d78be1f2a..e3599824a06e0a901bcb6d480a80e80ff9a881f5 100644
--- a/man/retrieveUnitNWISData.Rd
+++ b/man/retrieveUnitNWISData.Rd
@@ -2,8 +2,8 @@
 \alias{retrieveUnitNWISData}
 \title{Raw Data Import for Instantaneous USGS NWIS Data}
 \usage{
-  retrieveUnitNWISData(siteNumber, ParameterCd, StartDate,
-    EndDate, format = "xml", interactive = TRUE)
+retrieveUnitNWISData(siteNumber, ParameterCd, StartDate, EndDate,
+  format = "xml", interactive = TRUE)
 }
 \arguments{
   \item{siteNumber}{string USGS site number.  This is
@@ -34,16 +34,16 @@
   expected. The default is therefore "xml".}
 }
 \value{
-  data dataframe with agency, site, dateTime, time zone,
-  value, and code columns
+data dataframe with agency, site, dateTime, time zone,
+value, and code columns
 }
 \description{
-  Imports data from NWIS web service. This function gets
-  the data from here: \url{http://waterservices.usgs.gov/}
-  A list of parameter codes can be found here:
-  \url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} A list
-  of statistic codes can be found here:
-  \url{http://nwis.waterdata.usgs.gov/nwis/help/?read_file=stat&format=table}
+Imports data from NWIS web service. This function gets the
+data from here: \url{http://waterservices.usgs.gov/} A list
+of parameter codes can be found here:
+\url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} A list
+of statistic codes can be found here:
+\url{http://nwis.waterdata.usgs.gov/nwis/help/?read_file=stat&format=table}
 }
 \examples{
 siteNumber <- '05114000'