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(2010), Weighted Re-gres-sions on [] -Underfull \hbox (badness 1221) in paragraph at lines 1268--1269 +Underfull \hbox (badness 1221) in paragraph at lines 1255--1256 \OT1/ptm/m/n/10.95 Time, Dis-charge, and Sea-son (WRTDS), with an Ap-pli-ca-tio n to Chesa-peake Bay River [] -Underfull \hbox (badness 2443) in paragraph at lines 1268--1269 +Underfull \hbox (badness 2443) in paragraph at lines 1255--1256 \OT1/ptm/m/n/10.95 In-puts. JAWRA Jour-nal of the Amer-i-can Wa-ter Re-sources As-so-ci-a-tion, 46: 857-880. [] -Underfull \hbox (badness 3690) in paragraph at lines 1268--1269 +Underfull \hbox (badness 3690) in paragraph at lines 1255--1256 \OT1/ptm/m/n/10.95 doi: 10.1111/j.1752-1688.2010.00482.x []$\OT1/pcr/m/n/10.95 http : / / onlinelibrary . wiley . com / doi /$ [] -Package atveryend Info: Empty hook `BeforeClearDocument' on input line 1275. +Package atveryend Info: Empty hook `BeforeClearDocument' on input line 1262. Overfull \vbox (21.68121pt too high) has occurred while \output is active [] @@ -817,10 +817,10 @@ Overfull \vbox (21.68121pt too high) has occurred while \output is active [] [28 ] -Package atveryend Info: Empty hook `AfterLastShipout' on input line 1275. - (D:\LADData\RCode\dataRetrieval\vignettes\dataRetrieval.aux) -Package atveryend Info: Executing hook `AtVeryEndDocument' on input line 1275. -Package atveryend Info: Executing hook `AtEndAfterFileList' on input line 1275. +Package atveryend Info: Empty hook `AfterLastShipout' on input line 1262. + (D:\LADData\RCodes\dataRetrieval\vignettes\dataRetrieval.aux) +Package atveryend Info: Executing hook `AtVeryEndDocument' on input line 1262. +Package atveryend Info: Executing hook `AtEndAfterFileList' on input line 1262. Package rerunfilecheck Info: File `dataRetrieval.out' has not changed. (rerunfilecheck) Checksum: FA68DD2EA4402D1A5C9FB76C153FCB7A;1868. @@ -830,10 +830,10 @@ LaTeX Warning: There were undefined references. ) Here is how much of TeX's memory you used: - 8244 strings out of 494045 - 123106 string characters out of 3145961 - 216137 words of memory out of 3000000 - 11321 multiletter control sequences out of 15000+200000 + 8214 strings out of 494045 + 122340 string characters out of 3145960 + 215099 words of memory out of 3000000 + 11291 multiletter control sequences out of 15000+200000 30981 words of font info for 68 fonts, out of 3000000 for 9000 715 hyphenation exceptions out of 8191 44i,15n,42p,996b,411s stack positions out of 5000i,500n,10000p,200000b,50000s @@ -846,7 +846,7 @@ les (x86)/MiKTeX 2.9/fonts/type1/urw/courier/ucrb8a.pfb><C:/Program Files (x86) /type1/urw/times/utmb8a.pfb><C:/Program Files (x86)/MiKTeX 2.9/fonts/type1/urw/ times/utmr8a.pfb><C:/Program Files (x86)/MiKTeX 2.9/fonts/type1/urw/times/utmri 8a.pfb> -Output written on dataRetrieval.pdf (28 pages, 284917 bytes). +Output written on dataRetrieval.pdf (28 pages, 284857 bytes). PDF statistics: 401 PDF objects out of 1000 (max. 8388607) 82 named destinations out of 1000 (max. 500000) diff --git a/vignettes/dataRetrieval.pdf b/vignettes/dataRetrieval.pdf index 8a2aa5c17af7564b349efcd31c18bb766dfdf094..e802a0625fb05211565b1b70939c0dfb3082a8e9 100644 Binary files a/vignettes/dataRetrieval.pdf and b/vignettes/dataRetrieval.pdf differ diff --git a/vignettes/dataRetrieval.synctex.gz b/vignettes/dataRetrieval.synctex.gz index f340ba47323d04d5922c3fec7ac34e19b7a9978a..70a51bd3a9428ce39c58a16452f3775de368d04e 100644 Binary files a/vignettes/dataRetrieval.synctex.gz and b/vignettes/dataRetrieval.synctex.gz differ diff --git a/vignettes/dataRetrieval.tex b/vignettes/dataRetrieval.tex index 172dde3215925ca7172192d78aec05f00f3b8ade..1815c77d2429db7be05f6a686a4a714cbcfe46a4 100644 --- a/vignettes/dataRetrieval.tex +++ b/vignettes/dataRetrieval.tex @@ -100,7 +100,6 @@ - %------------------------------------------------------------ \title{The dataRetrieval R package} %------------------------------------------------------------ @@ -175,7 +174,7 @@ Not every station will measure all parameters. A short list of commonly measured % latex table generated in R 3.0.2 by xtable 1.7-1 package -% Wed Dec 18 15:54:18 2013 +% Mon Jan 27 13:37:44 2014 \begin{table}[ht] \centering \begin{tabular}{rll} @@ -238,7 +237,7 @@ For unit values data (sensor data), the parameter code and site ID will suffice. Some common stat codes are shown in Table \ref{tab:stat}. % latex table generated in R 3.0.2 by xtable 1.7-1 package -% Wed Dec 18 15:54:18 2013 +% Mon Jan 27 13:37:45 2014 \begin{table}[ht] \centering \begin{tabular}{rll} @@ -325,7 +324,7 @@ To find out the available data at a particular USGS site, including measured par % latex table generated in R 3.0.2 by xtable 1.7-1 package -% Wed Dec 18 15:54:19 2013 +% Mon Jan 27 13:37:46 2014 \begin{table}[ht] \centering \begin{tabular}{rlllll} @@ -333,7 +332,7 @@ To find out the available data at a particular USGS site, including measured par & shortName & Start & End & Count & Units \\ \hline 1 & Temperature, water & 2010-10-01 & 2012-05-09 & 529 & deg C \\ - 2 & Stream flow, mean. daily & 1948-01-01 & 2013-12-17 & 24093 & ft3/s \\ + 2 & Stream flow, mean. daily & 1948-01-01 & 2014-01-26 & 24133 & ft3/s \\ 3 & Specific conductance & 2010-10-01 & 2012-05-09 & 527 & uS/cm @25C \\ 4 & Suspended sediment concentration (SSC) & 1980-10-01 & 1991-09-30 & 3651 & mg/l \\ 5 & Suspended sediment discharge & 1980-10-01 & 1991-09-30 & 3652 & tons/day \\ @@ -480,29 +479,17 @@ Any data that are collected at regular time intervals (such as 15-minute or hour \hlstd{dischargeToday} \hlkwb{<-} \hlkwd{retrieveUnitNWISData}\hlstd{(siteNumber, parameterCd,} \hlstd{startDate, endDate)} \end{alltt} -\end{kframe} + + +{\ttfamily\noindent\bfseries\color{errorcolor}{Error: invalid 'file' argument}}\end{kframe} \end{knitrout} Which produces the following dataframe: \begin{knitrout} \definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe} -\begin{verbatim} - agency site dateTime X02_00060_00011 -1 USGS 01491000 2012-05-12 00:00:00 83 -2 USGS 01491000 2012-05-12 00:15:00 83 -3 USGS 01491000 2012-05-12 00:30:00 83 -4 USGS 01491000 2012-05-12 00:45:00 83 -5 USGS 01491000 2012-05-12 01:00:00 85 -6 USGS 01491000 2012-05-12 01:15:00 83 - X02_00060_00011_cd -1 A -2 A -3 A -4 A -5 A -6 A -\end{verbatim} -\end{kframe} + + +{\ttfamily\noindent\bfseries\color{errorcolor}{Error: object 'dischargeToday' not found}}\end{kframe} \end{knitrout} @@ -673,7 +660,7 @@ There are 4750 data points, and 4750 days. Details of the Daily dataframe are listed below: % latex table generated in R 3.0.2 by xtable 1.7-1 package -% Wed Dec 18 15:56:12 2013 +% Mon Jan 27 13:37:59 2014 \begin{table}[ht] \centering \begin{tabular}{rllll} @@ -784,7 +771,7 @@ As an example to understand how the dataRetrieval package handles a more complex % latex table generated in R 3.0.2 by xtable 1.7-1 package -% Wed Dec 18 15:56:13 2013 +% Mon Jan 27 13:38:00 2014 \begin{table}[ht] \centering \begin{tabular}{rllrlrlr} @@ -1199,7 +1186,7 @@ There are a few steps that are required in order to create a table in a Microsof 5 Suspended sediment discharge 1980-10-01 End Count Units 1 2012-05-09 529 deg C -2 2013-12-17 24093 ft3/s +2 2014-01-26 24133 ft3/s 3 2012-05-09 527 uS/cm @25C 4 1991-09-30 3651 mg/l 5 1991-09-30 3652 tons/day diff --git a/vignettes/figure/egretEx.pdf b/vignettes/figure/egretEx.pdf index 95dea925ca7d4a190ccd77ad5b66f5b6cfeaa7b0..86814daa384ed3c2ef57c54230e7ed8b69c1ce7e 100644 Binary files a/vignettes/figure/egretEx.pdf and b/vignettes/figure/egretEx.pdf differ diff --git a/vignettes/figure/getNWIStemperaturePlot.pdf b/vignettes/figure/getNWIStemperaturePlot.pdf index 880867b0fb0444ea1f78276742947386f7b791e9..9174df0535726ead6f89920ba0817bba837be6e2 100644 Binary files a/vignettes/figure/getNWIStemperaturePlot.pdf and b/vignettes/figure/getNWIStemperaturePlot.pdf differ diff --git a/vignettes/figure/getQWtemperaturePlot.pdf b/vignettes/figure/getQWtemperaturePlot.pdf index 5a8193a46afbed7a9275feb43fab55b780d3498d..72947c7d99a187f40afe3b5e517dcde1b6ae20e0 100644 Binary files a/vignettes/figure/getQWtemperaturePlot.pdf and b/vignettes/figure/getQWtemperaturePlot.pdf differ