diff --git a/R/readWQPqw.r b/R/readWQPqw.r index 167f87b06059b4ff1c68948f1b12df0818ccb14e..045d91ebed2e9698157240c75b5038da1fb0dd42 100644 --- a/R/readWQPqw.r +++ b/R/readWQPqw.r @@ -15,8 +15,74 @@ #' @param endDate character ending date for data retrieval in the form YYYY-MM-DD. Default is "" which indicates #' retrieval for the latest possible record. #' @keywords data import USGS web service -#' @return retval dataframe raw data returned from the Water Quality Portal. Additionally, a POSIXct dateTime column is supplied for -#' start and end times. +#' @return A data frame with at least the following columns: +#' \tabular{lll}{ +#' Name \tab Type \tab Description \cr +#' OrganizationIdentifier \tab character \tab A designator used to uniquely identify a unique business establishment within a context.\cr +#' OrganizationFormalName \tab character \tab The legal designator (i.e. formal name) of an organization.\cr +#' ActivityIdentifier \tab character \tab Designator that uniquely identifies an activity within an organization.\cr +#' ActivityTypeCode \tab character \tab The text describing the type of activity.\cr +#' ActivityMediaName \tab character \tab Name or code indicating the environmental medium where the sample was taken.\cr +#' ActivityMediaSubdivisionName \tab character \tab Name or code indicating the environmental matrix as a subdivision of the sample media.\cr +#' ActivityStartDate \tab character \tab The calendar date on which the field activity is started.\cr +#' ActivityStartTime/Time \tab character \tab The time of day that is reported when the field activity began, based on a 24-hour timescale.\cr +#' ActivityStartTime/TimeZoneCode \tab character \tab The time zone for which the time of day is reported. Any of the longitudinal divisions of the earth's surface in which a standard time is kept.\cr +#' ActivityEndDate \tab character \tab The calendar date when the field activity is completed.\cr +#' ActivityEndTime/Time \tab character \tab The time of day that is reported when the field activity ended, based on a 24-hour timescale.\cr +#' ActivityEndTime/TimeZoneCode \tab character \tab The time zone for which the time of day is reported. Any of the longitudinal divisions of the earth's surface in which a standard time is kept.\cr +#' ActivityDepthHeightMeasure/MeasureValue \tab character \tab A measurement of the vertical location (measured from a reference point) at which an activity occurred. Measure value is given in the units stored in ActivityDepthHeightMeasure/MeasureUnitCode.\cr +#' ActivityDepthHeightMeasure/MeasureUnitCode \tab character \tab The code that represents the unit for measuring the item.\cr +#' ActivityDepthAltitudeReferencePointText \tab character \tab The reference used to indicate the datum or reference used to establish the depth/altitude of an activity.\cr +#' ActivityTopDepthHeightMeasure/MeasureValue \tab character \tab A measurement of the upper vertical location of a vertical location range (measured from a reference point) at which an activity occurred. Measure value is given in the units stored in ActivityTopDepthHeightMeasure/MeasureUnitCode.\cr +#' ActivityTopDepthHeightMeasure/MeasureUnitCode \tab character \tab The code that represents the unit for measuring the item.\cr +#' ActivityBottomDepthHeightMeasure/MeasureValue \tab character \tab A measurement of the lower vertical location of a vertical location range (measured from a reference point) at which an activity occurred. Measure value is given in the units stored in ActivityBottomDepthHeightMeasure/MeasureUnitCode.\cr +#' ActivityBottomDepthHeightMeasure/MeasureUnitCode \tab character \tab The code that represents the unit for measuring the item.\cr +#' ProjectIdentifier \tab character \tab A designator used to uniquely identify a data collection project within a context of an organization.\cr +#' ActivityConductingOrganizationText \tab character \tab A name of the Organization conducting an activity.\cr +#' MonitoringLocationIdentifier \tab character \tab A designator used to describe the unique name, number, or code assigned to identify the monitoring location.\cr +#' ActivityCommentText \tab character \tab General comments concerning the activity.\cr +#' SampleAquifer \tab character \tab A code that designates the aquifer associated with groundwater samples.\cr +#' HydrologicCondition \tab character \tab Hydrologic condition is the hydrologic condition that is represented by the sample collected (i.e. ? normal, falling, rising, peak stage).\cr +#' HydrologicEvent \tab character \tab A hydrologic event that is represented by the sample collected (i.e. - storm, drought, snowmelt).\cr +#' SampleCollectionMethod/MethodIdentifier\tab character \tab The identification number or code assigned by the method publisher.\cr +#' SampleCollectionMethod/MethodIdentifierContext \tab character \tab Identifies the source or data system that created or defined the identifier.\cr +#' SampleCollectionMethod/MethodName \tab character \tab The title that appears on the method from the method publisher.\cr +#' SampleCollectionEquipmentName \tab character \tab The name for the equipment used in collecting the sample.\cr +#' ResultDetectionConditionText \tab character \tab The textual descriptor of a result.\cr +#' CharacteristicName \tab character \tab The object, property, or substance which is evaluated or enumerated by either a direct field measurement, a direct field observation, or by laboratory analysis of material collected in the field.\cr +#' ResultSampleFractionText \tab character \tab The text name of the portion of the sample associated with results obtained from a physically-partitioned sample.\cr +#' ResultMeasureValue \tab character \tab The reportable measure of the result for the chemical, microbiological or other characteristic being analyzed. Measure value is given in the units stored in ResultMeasure/MeasureUnitCode.\cr +#' MeasureQualifierCode \tab character \tab A code used to identify any qualifying issues that affect the results.\cr +#' ResultMeasure/MeasureUnitCode \tab character \tab The code that represents the unit for measuring the item.\cr +#' ResultStatusIdentifier \tab character \tab Indicates the acceptability of the result with respect to QA/QC criteria.\cr +#' StatisticalBaseCode \tab character \tab The code for the method used to calculate derived results.\cr +#' ResultValueTypeName \tab character \tab A name that qualifies the process which was used in the determination of the result value (e.g., actual, estimated, calculated).\cr +#' ResultWeightBasisText \tab character \tab The name that represents the form of the sample or portion of the sample which is associated with the result value (e.g., wet weight, dry weight, ash-free dry weight).\cr +#' ResultTimeBasisText \tab character \tab The period of time (in days) over which a measurement was made. For example, BOD can be measured as 5 day or 20 day BOD.\cr +#' ResultTemperatureBasisText \tab character \tab The name that represents the controlled temperature at which the sample was maintained during analysis, e.g. 25 deg BOD analysis.\cr +#' ResultParticleSizeBasisText \tab character \tab User defined free text describing the particle size class for which the associated result is defined.\cr +#' PrecisionValue \tab character \tab A measure of mutual agreement among individual measurements of the same property usually under prescribed similar conditions.\cr +#' ResultCommentText \tab character \tab Free text with general comments concerning the result.\cr +#' USGSPCode \tab character \tab 5-digit number used in the US Geological Survey computerized data system, National Water Information System (NWIS), to uniquely identify a specific constituent.\cr +#' ResultDepthHeightMeasure/MeasureValue \tab character \tab A measurement of the vertical location (measured from a reference point) at which a result occurred.\cr +#' ResultDepthHeightMeasure/MeasureUnitCode \tab character \tab The code that represents the unit for measuring the item.\cr +#' ResultDepthAltitudeReferencePointText \tab character \tab The reference used to indicate the datum or reference used to establish the depth/altitude of a result.\cr +#' SubjectTaxonomicName \tab character \tab The name of the organism from which a tissue sample was taken.\cr +#' SampleTissueAnatomyName \tab character \tab The name of the anatomy from which a tissue sample was taken.\cr +#' ResultAnalyticalMethod/MethodIdentifier \tab character \tab The identification number or code assigned by the method publisher.\cr +#' ResultAnalyticalMethod/MethodIdentifierContext \tab character \tab Identifies the source or data system that created or defined the identifier.\cr +#' ResultAnalyticalMethod/MethodName \tab character \tab The title that appears on the method from the method publisher.\cr +#' MethodDescriptionText \tab character \tab A brief summary that provides general information about the method.\cr +#' LaboratoryName \tab character \tab The name of Lab responsible for the result.\cr +#' AnalysisStartDate \tab character \tab The calendar date on which the analysis began.\cr +#' ResultLaboratoryCommentText \tab character \tab Remarks which further describe the laboratory procedures which produced the result.\cr +#' DetectionQuantitationLimitTypeName \tab character \tab Text describing the type of detection or quantitation level used in the analysis of a characteristic.\cr +#' DetectionQuantitationLimitMeasure/MeasureValue \tab character \tab Constituent concentration that, when processed through the complete method, produces a signal that is statistically different from a blank. Measure value is given in the units stored in DetectionQuantitationLimitMeasure/MeasureUnitCode.\cr +#' DetectionQuantitationLimitMeasure/MeasureUnitCode \tab character \tab The code that represents the unit for measuring the item.\cr +#' PreparationStartDate \tab character \tab The calendar date when the preparation/extraction of the sample for analysis began.\cr +#' ActivityStartDateTime \tab POSIXct \tab Activity start date and time converted to POSIXct UTC.\cr +#' ActivityEndDateTime \tab POSIXct \tab Activity end date and time converted to POSIXct UTC.\cr +#' } #' #' There are also several useful attributes attached to the data frame: #' \tabular{lll}{ diff --git a/man/readWQPqw.Rd b/man/readWQPqw.Rd index d108a77deb93556868dce6136ea4b81bd3cba5ac..ea02a92ee83d4e854db3709e03e7bec76590d5a0 100644 --- a/man/readWQPqw.Rd +++ b/man/readWQPqw.Rd @@ -18,8 +18,74 @@ retrieval for the latest possible record.} \item{siteNumber}{character site number. This needs to include the full agency code prefix.} } \value{ -retval dataframe raw data returned from the Water Quality Portal. Additionally, a POSIXct dateTime column is supplied for -start and end times. +A data frame with at least the following columns: +\tabular{lll}{ +Name \tab Type \tab Description \cr +OrganizationIdentifier \tab character \tab A designator used to uniquely identify a unique business establishment within a context.\cr +OrganizationFormalName \tab character \tab The legal designator (i.e. formal name) of an organization.\cr +ActivityIdentifier \tab character \tab Designator that uniquely identifies an activity within an organization.\cr +ActivityTypeCode \tab character \tab The text describing the type of activity.\cr +ActivityMediaName \tab character \tab Name or code indicating the environmental medium where the sample was taken.\cr +ActivityMediaSubdivisionName \tab character \tab Name or code indicating the environmental matrix as a subdivision of the sample media.\cr +ActivityStartDate \tab character \tab The calendar date on which the field activity is started.\cr +ActivityStartTime/Time \tab character \tab The time of day that is reported when the field activity began, based on a 24-hour timescale.\cr +ActivityStartTime/TimeZoneCode \tab character \tab The time zone for which the time of day is reported. Any of the longitudinal divisions of the earth's surface in which a standard time is kept.\cr +ActivityEndDate \tab character \tab The calendar date when the field activity is completed.\cr +ActivityEndTime/Time \tab character \tab The time of day that is reported when the field activity ended, based on a 24-hour timescale.\cr +ActivityEndTime/TimeZoneCode \tab character \tab The time zone for which the time of day is reported. Any of the longitudinal divisions of the earth's surface in which a standard time is kept.\cr +ActivityDepthHeightMeasure/MeasureValue \tab character \tab A measurement of the vertical location (measured from a reference point) at which an activity occurred. Measure value is given in the units stored in ActivityDepthHeightMeasure/MeasureUnitCode.\cr +ActivityDepthHeightMeasure/MeasureUnitCode \tab character \tab The code that represents the unit for measuring the item.\cr +ActivityDepthAltitudeReferencePointText \tab character \tab The reference used to indicate the datum or reference used to establish the depth/altitude of an activity.\cr +ActivityTopDepthHeightMeasure/MeasureValue \tab character \tab A measurement of the upper vertical location of a vertical location range (measured from a reference point) at which an activity occurred. Measure value is given in the units stored in ActivityTopDepthHeightMeasure/MeasureUnitCode.\cr +ActivityTopDepthHeightMeasure/MeasureUnitCode \tab character \tab The code that represents the unit for measuring the item.\cr +ActivityBottomDepthHeightMeasure/MeasureValue \tab character \tab A measurement of the lower vertical location of a vertical location range (measured from a reference point) at which an activity occurred. Measure value is given in the units stored in ActivityBottomDepthHeightMeasure/MeasureUnitCode.\cr +ActivityBottomDepthHeightMeasure/MeasureUnitCode \tab character \tab The code that represents the unit for measuring the item.\cr +ProjectIdentifier \tab character \tab A designator used to uniquely identify a data collection project within a context of an organization.\cr +ActivityConductingOrganizationText \tab character \tab A name of the Organization conducting an activity.\cr +MonitoringLocationIdentifier \tab character \tab A designator used to describe the unique name, number, or code assigned to identify the monitoring location.\cr +ActivityCommentText \tab character \tab General comments concerning the activity.\cr +SampleAquifer \tab character \tab A code that designates the aquifer associated with groundwater samples.\cr +HydrologicCondition \tab character \tab Hydrologic condition is the hydrologic condition that is represented by the sample collected (i.e. ? normal, falling, rising, peak stage).\cr +HydrologicEvent \tab character \tab A hydrologic event that is represented by the sample collected (i.e. - storm, drought, snowmelt).\cr +SampleCollectionMethod/MethodIdentifier\tab character \tab The identification number or code assigned by the method publisher.\cr +SampleCollectionMethod/MethodIdentifierContext \tab character \tab Identifies the source or data system that created or defined the identifier.\cr +SampleCollectionMethod/MethodName \tab character \tab The title that appears on the method from the method publisher.\cr +SampleCollectionEquipmentName \tab character \tab The name for the equipment used in collecting the sample.\cr +ResultDetectionConditionText \tab character \tab The textual descriptor of a result.\cr +CharacteristicName \tab character \tab The object, property, or substance which is evaluated or enumerated by either a direct field measurement, a direct field observation, or by laboratory analysis of material collected in the field.\cr +ResultSampleFractionText \tab character \tab The text name of the portion of the sample associated with results obtained from a physically-partitioned sample.\cr +ResultMeasureValue \tab character \tab The reportable measure of the result for the chemical, microbiological or other characteristic being analyzed. Measure value is given in the units stored in ResultMeasure/MeasureUnitCode.\cr +MeasureQualifierCode \tab character \tab A code used to identify any qualifying issues that affect the results.\cr +ResultMeasure/MeasureUnitCode \tab character \tab The code that represents the unit for measuring the item.\cr +ResultStatusIdentifier \tab character \tab Indicates the acceptability of the result with respect to QA/QC criteria.\cr +StatisticalBaseCode \tab character \tab The code for the method used to calculate derived results.\cr +ResultValueTypeName \tab character \tab A name that qualifies the process which was used in the determination of the result value (e.g., actual, estimated, calculated).\cr +ResultWeightBasisText \tab character \tab The name that represents the form of the sample or portion of the sample which is associated with the result value (e.g., wet weight, dry weight, ash-free dry weight).\cr +ResultTimeBasisText \tab character \tab The period of time (in days) over which a measurement was made. For example, BOD can be measured as 5 day or 20 day BOD.\cr +ResultTemperatureBasisText \tab character \tab The name that represents the controlled temperature at which the sample was maintained during analysis, e.g. 25 deg BOD analysis.\cr +ResultParticleSizeBasisText \tab character \tab User defined free text describing the particle size class for which the associated result is defined.\cr +PrecisionValue \tab character \tab A measure of mutual agreement among individual measurements of the same property usually under prescribed similar conditions.\cr +ResultCommentText \tab character \tab Free text with general comments concerning the result.\cr +USGSPCode \tab character \tab 5-digit number used in the US Geological Survey computerized data system, National Water Information System (NWIS), to uniquely identify a specific constituent.\cr +ResultDepthHeightMeasure/MeasureValue \tab character \tab A measurement of the vertical location (measured from a reference point) at which a result occurred.\cr +ResultDepthHeightMeasure/MeasureUnitCode \tab character \tab The code that represents the unit for measuring the item.\cr +ResultDepthAltitudeReferencePointText \tab character \tab The reference used to indicate the datum or reference used to establish the depth/altitude of a result.\cr +SubjectTaxonomicName \tab character \tab The name of the organism from which a tissue sample was taken.\cr +SampleTissueAnatomyName \tab character \tab The name of the anatomy from which a tissue sample was taken.\cr +ResultAnalyticalMethod/MethodIdentifier \tab character \tab The identification number or code assigned by the method publisher.\cr +ResultAnalyticalMethod/MethodIdentifierContext \tab character \tab Identifies the source or data system that created or defined the identifier.\cr +ResultAnalyticalMethod/MethodName \tab character \tab The title that appears on the method from the method publisher.\cr +MethodDescriptionText \tab character \tab A brief summary that provides general information about the method.\cr +LaboratoryName \tab character \tab The name of Lab responsible for the result.\cr +AnalysisStartDate \tab character \tab The calendar date on which the analysis began.\cr +ResultLaboratoryCommentText \tab character \tab Remarks which further describe the laboratory procedures which produced the result.\cr +DetectionQuantitationLimitTypeName \tab character \tab Text describing the type of detection or quantitation level used in the analysis of a characteristic.\cr +DetectionQuantitationLimitMeasure/MeasureValue \tab character \tab Constituent concentration that, when processed through the complete method, produces a signal that is statistically different from a blank. Measure value is given in the units stored in DetectionQuantitationLimitMeasure/MeasureUnitCode.\cr +DetectionQuantitationLimitMeasure/MeasureUnitCode \tab character \tab The code that represents the unit for measuring the item.\cr +PreparationStartDate \tab character \tab The calendar date when the preparation/extraction of the sample for analysis began.\cr +ActivityStartDateTime \tab POSIXct \tab Activity start date and time converted to POSIXct UTC.\cr +ActivityEndDateTime \tab POSIXct \tab Activity end date and time converted to POSIXct UTC.\cr +} There are also several useful attributes attached to the data frame: \tabular{lll}{