Merge pull request #580 from ldecicco-USGS/master

Cleanup pkgdown

Merge pull request #580 from ldecicco-USGS/master
Cleanup pkgdown
f62b51b5 · Laura A DeCicco · GitHub · dff742da · b24a0252 · f62b51b5
Unverified Commit f62b51b5 authored Jul 30, 2021 by Laura A DeCicco Committed by GitHub Jul 30, 2021
--- a/.Rbuildignore
+++ b/.Rbuildignore
@@ -32,6 +32,8 @@ vignettes/usMaps_cache
 vignettes/movingAverages.Rmd
 vignettes/tutorial_slides.Rmd
 vignettes/nldi*
+vignettes/atascadero-creek-nldi.png
+vignettes/ucsb.png
 man/figures/highrezlogo-01.png
 man/figures/USGS_R.png
 playing_with_post.R

--- a/DESCRIPTION
+++ b/DESCRIPTION
 Package: dataRetrieval
 Type: Package
 Title: Retrieval Functions for USGS and EPA Hydrologic and Water Quality Data
-Version: 2.7.9
+Version: 2.7.9.0001
 Authors@R: c(
    person("Laura", "DeCicco", role = c("aut","cre"),
            email = "ldecicco@usgs.gov",

--- a/NEWS
+++ b/NEWS
+dataRetrieval 2.7.9
+===================
+* Fix bug caused by changes in NLDI services
+* Adding warnings to NWIS qw functions
+* Added new vignette on changes
+
 dataRetrieval 2.7.8
 ==================
 * Fixed missing comments in readNWISqw

--- a/R/readNWISdata.r
+++ b/R/readNWISdata.r
@@ -80,10 +80,6 @@
 #'                   service="dv", startDate=startDate, endDate=endDate)
 #' siteInfo <- readNWISdata(stateCd="WI", parameterCd="00010",
 #'                   hasDataTypeCd="iv", service="site")
-#' qwData <- readNWISdata(bBox=c(-82.5,41.52,-81,41),startDate=as.Date("2000-01-01"),
-#'                   drain_area_va_min=50, qw_count_nu=50,qw_attributes="expanded",
-#'                   qw_sample_wide="wide",list_of_search_criteria=c("lat_long_bounding_box",
-#'                   "drain_area_va","obs_count_nu"),service="qw")
 #' temp <- readNWISdata(bBox=c(-83,36.5,-81,38.5), parameterCd="00010", service="site", 
 #'                    seriesCatalogOutput=TRUE)
 #' wiGWL <- readNWISdata(stateCd="WI",service="gwlevels")

--- a/README.md
+++ b/README.md
 # dataRetrieval <img src="man/figures/logo.png" alt="dataRetrieval" height="150px" align="right" />
 
+[![R build status](https://github.com/USGS-R/dataRetrieval/workflows/R-CMD-check/badge.svg)](https://github.com/USGS-R/dataRetrieval/actions)[![Coverage Status](https://coveralls.io/repos/github/USGS-R/dataRetrieval/badge.svg?branch=master)](https://coveralls.io/github/USGS-R/dataRetrieval?branch=master) [![status](https://img.shields.io/badge/USGS-Core-green.svg)](https://owi.usgs.gov/R/packages.html#core) [![CRAN version](http://www.r-pkg.org/badges/version/dataRetrieval)](https://cran.r-project.org/package=dataRetrieval) [![](http://cranlogs.r-pkg.org/badges/dataRetrieval)](https://cran.r-project.org/package=dataRetrieval) [![](http://cranlogs.r-pkg.org/badges/grand-total/dataRetrieval)](https://cran.r-project.org/package=dataRetrieval)

 Retrieval functions for USGS and EPA hydrologic and water quality data.


--- a/_pkgdown.yml
+++ b/_pkgdown.yml
@@ -12,6 +12,8 @@ navbar:
    menu:
    - text: Tutorial
      href: articles/tutorial.html
+    - text: Changes to QW
+      href: articles/qwdata_changes.html
    - text: Moving Averages
      href: articles/movingAverages.html
    - text: Stat Service

--- a/inst/CITATION
+++ b/inst/CITATION
@@ -11,7 +11,7 @@ bibentry(bibtype = "Manual",
  title = "dataRetrieval: R packages for discovering and retrieving water data available from U.S. federal hydrologic web services",
  publisher = "U.S. Geological Survey",
  address="Reston, VA",
-  version = "2.7.8",
+  version = "2.7.9",
  institution = "U.S. Geological Survey",
  year = 2021,
  doi = "10.5066/P9X4L3GE",

--- a/man/readNWISdata.Rd
+++ b/man/readNWISdata.Rd
@@ -91,10 +91,6 @@ waterYear <- readNWISdata(bBox=c(-83,36.5,-81,38.5), parameterCd="00010",
                  service="dv", startDate=startDate, endDate=endDate)
 siteInfo <- readNWISdata(stateCd="WI", parameterCd="00010",
                  hasDataTypeCd="iv", service="site")
-qwData <- readNWISdata(bBox=c(-82.5,41.52,-81,41),startDate=as.Date("2000-01-01"),
-                  drain_area_va_min=50, qw_count_nu=50,qw_attributes="expanded",
-                  qw_sample_wide="wide",list_of_search_criteria=c("lat_long_bounding_box",
-                  "drain_area_va","obs_count_nu"),service="qw")
 temp <- readNWISdata(bBox=c(-83,36.5,-81,38.5), parameterCd="00010", service="site", 
                   seriesCatalogOutput=TRUE)
 wiGWL <- readNWISdata(stateCd="WI",service="gwlevels")

--- a/vignettes/qwdata_changes.Rmd
+++ b/vignettes/qwdata_changes.Rmd
@@ -29,7 +29,7 @@ knitr::opts_chunk$set(echo = TRUE,

 # Changes to water quality services

-There was a recent announcement that the NWIS water quality web services will be shut down in spring of 2022. What does this mean for `dataRetrieval` users? The water quality data will continue to be available, but it must be accessed from the [Water Quality Portal](https://www.waterqualitydata.us/) rather than the NWIS services. There are 3 major `dataRetrieval` functions that will be affected: `readNWISqw`, `whatNWISdata`, and `readNWISdata`. This vignette will describe the most common workflows conversions needed to update existing scripts. 
+There was a recent announcement that the NWIS discrete water quality web services will be shut down in spring of 2022  (continuous water quality data will continue to be made available via NWIS functions). What does this mean for `dataRetrieval` users? The water quality data will continue to be available, but it must be accessed from the [Water Quality Portal](https://www.waterqualitydata.us/) rather than the NWIS services. There are 3 major `dataRetrieval` functions that will be affected: `readNWISqw`, `whatNWISdata`, and `readNWISdata`. This vignette will describe the most common workflows conversions needed to update existing scripts. 

 This vignette is being provided well in advance of any breaking changes, and more information and guidance will be provided. If you need more help than is provided here, please reach out to gs-w-IOW_PO_team@usgs.gov