diff --git a/findex/_targets.R b/findex/_targets.R
index efed7eadc3190bee215b003be50435ed86f97d73..3289c440fd54fe185a3edcf4df647ef77a1e199d 100644
--- a/findex/_targets.R
+++ b/findex/_targets.R
@@ -101,8 +101,8 @@ p2 <- list(
tar_target(
p2_threat_categories,
- p2_weights |>
- pull(Threat_Category) |>
+ p2_mean_weighted_threats |>
+ pull(ThreatCategory) |>
unique()
),
tar_target(
@@ -122,11 +122,11 @@ p2 <- list(
mutate(
# color ramps
pal = case_when(
- MajorCat == "Habitat" ~ list(c("#7A562B", "#C7985F", "#E1C8AA")),
- MajorCat == "Exploitation" ~ list(c("#B74F49", "#E2B8B6")),
- MajorCat == "Invasive species" ~ list(c("#4E6D6E", "#C9D8D9")),
- MajorCat == "Pollution" ~ list(c("#002D5E", "#B2C0CE")),
- MajorCat == "Climate and weather" ~ list(c("#835192", "#DDCCE2"))
+ MajorCat == "Habitat" ~ list(c("#4E6D6E", "#C9D8D9")),#),
+ MajorCat == "Fishing pressure" ~ list(c("#835192", "#DDCCE2")),
+ MajorCat == "Invasive species" ~ list(c("#B74F49", "#E2B8B6")),
+ MajorCat == "Pollution" ~ list(c("#7A562B", "#C7985F", "#E1C8AA")),
+ MajorCat == "Climate and weather" ~ list(c("#002D5E", "#B2C0CE"))
),
# file name templates
threat_legend_raw = "out/%s_legend_raw.png",
@@ -134,21 +134,21 @@ p2 <- list(
threat_map = "../src/assets/images/%s_map.png",
subThreat_legend_raw = case_when(
MajorCat %in% "Habitat" ~ "out/H_%s_legend_raw.png",
- MajorCat %in% "Exploitation" ~ "out/E_%s_legend_raw.png",
+ MajorCat %in% "Fishing pressure" ~ "out/FP_%s_legend_raw.png",
MajorCat %in% "Invasive species" ~ "out/IS_%s_legend_raw.png",
MajorCat %in% "Pollution" ~ "out/P_%s_legend_raw.png",
MajorCat %in% "Climate and weather" ~ "out/CW_%s_legend_raw.png"
),
subThreat_legend = case_when(
MajorCat %in% "Habitat" ~ "../src/assets/images/H_%s_legend.png",
- MajorCat %in% "Exploitation" ~ "../src/assets/images/E_%s_legend.png",
+ MajorCat %in% "Fishing pressure" ~ "../src/assets/images/FP_%s_legend.png",
MajorCat %in% "Invasive species" ~ "../src/assets/images/IS_%s_legend.png",
MajorCat %in% "Pollution" ~ "../src/assets/images/P_%s_legend.png",
MajorCat %in% "Climate and weather" ~ "../src/assets/images/CW_%s_legend.png"
),
subThreat_map = case_when(
MajorCat %in% "Habitat" ~ "../src/assets/images/H_%s_map.png",
- MajorCat %in% "Exploitation" ~ "../src/assets/images/E_%s_map.png",
+ MajorCat %in% "Fishing pressure" ~ "../src/assets/images/FP_%s_map.png",
MajorCat %in% "Invasive species" ~ "../src/assets/images/IS_%s_map.png",
MajorCat %in% "Pollution" ~ "../src/assets/images/P_%s_map.png",
MajorCat %in% "Climate and weather" ~ "../src/assets/images/CW_%s_map.png"
diff --git a/findex/src/data_utils.R b/findex/src/data_utils.R
index 2f7e33cb9b36408cc23d9db3f7194ad83096fe2e..a69c509722f35955b2485832484af89f20bc25e9 100644
--- a/findex/src/data_utils.R
+++ b/findex/src/data_utils.R
@@ -26,7 +26,9 @@ compute_weighted_threats <- function(threat_data, threat_weights,
# "No Data")) |>
left_join(select(threat_weights, ThreatCode = Threat_Code, Threat,
ThreatCategory = Threat_Category, everything())) |>
- mutate(weightedThreatMetric = ThreatMetric * Final_Weight)
+ mutate(weightedThreatMetric = ThreatMetric * Final_Weight) |>
+ mutate(ThreatCategory = case_when(ThreatCategory == "Exploitation" ~ "Fishing pressure",
+ .default = as.character(ThreatCategory)))
}
#' @description sum weighted threat scores by threat type
diff --git a/public/findex_total_weighted_threats.csv b/public/findex_total_weighted_threats.csv
index b09fdf6efbd200c37c03d878b7933f600dd3266c..1590ed6aff07da075386f443963fe773d5f6fcb7 100644
--- a/public/findex_total_weighted_threats.csv
+++ b/public/findex_total_weighted_threats.csv
@@ -17,7 +17,7 @@ Climate and weather,Change in flooding,104.22482258816949
Pollution,Pharmaceuticals,99.44918162735365
Pollution,Oil or gas exploration,85.99893108069402
Pollution,Plastics,63.147615725260046
-Exploitation,Overfishing,52.569597166942
+Fishing pressure,Overfishing,52.569597166942
Pollution,Mining,49.24546238895636
Climate and weather,Change in wind patterns,48.12961308126547
Climate and weather,Change in ice cover,11.453366447637002
diff --git a/src/assets/images/CW_Change_in_flooding_legend.png b/src/assets/images/CW_Change_in_flooding_legend.png
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diff --git a/src/assets/images/CW_Change_in_flooding_map.png b/src/assets/images/CW_Change_in_flooding_map.png
index 4d5eca5a830a36881f9d54e17de0527a44717c3f..a6e5c543e23ad0d5e81ab3b52fc15528b6824787 100644
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diff --git a/src/assets/images/CW_Change_in_ice_cover_legend.png b/src/assets/images/CW_Change_in_ice_cover_legend.png
index 50869416f69ff773f223c69e11e0dc5fa597f8fd..61cddb53bbce8f9d526cc374c2e80140dc7b89cc 100644
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diff --git a/src/assets/images/CW_Change_in_ice_cover_map.png b/src/assets/images/CW_Change_in_ice_cover_map.png
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diff --git a/src/assets/images/CW_Change_in_water_temperature_legend.png b/src/assets/images/CW_Change_in_water_temperature_legend.png
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diff --git a/src/assets/images/CW_Change_in_water_temperature_map.png b/src/assets/images/CW_Change_in_water_temperature_map.png
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diff --git a/src/assets/images/CW_Change_in_wind_patterns_legend.png b/src/assets/images/CW_Change_in_wind_patterns_legend.png
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diff --git a/src/assets/images/CW_Change_in_wind_patterns_map.png b/src/assets/images/CW_Change_in_wind_patterns_map.png
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diff --git a/src/assets/images/CW_Drought_legend.png b/src/assets/images/CW_Drought_legend.png
index 43af0be711e6fb8170495f6b7c23cc59c964a2f6..78975a2cf723c68ca1e3c1c1d8f37c7ff3fa4f14 100644
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diff --git a/src/assets/images/CW_Drought_map.png b/src/assets/images/CW_Drought_map.png
index a811aae67e41b6a80e89c86da493652a88d32657..09b5a99eb008eb3dbe766560107db22d1b4b3102 100644
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