Initial import

.gitignore

+build
+cobertura.ser
+dist
+instrumented
+.DS_Store
\ No newline at end of file

LICENSE.md

+Unless otherwise noted, This software is in the public domain because it
+contains materials that originally came from the United States Geological
+Survey, an agency of the United States Department of Interior. For more
+information, see the official USGS copyright policy at
+http://www.usgs.gov/visual-id/credit_usgs.html#copyright
+
+
+Dependent libraries found in the "lib" directory are distributed under the
+open source (or open source-like) licenses/agreements. Appropriate license
+aggrements for each library can be found in the "lib" directory.
+
+Libraries used at runtime
+-------------------------
+
+- JLargeArrays-1.2.jar     (https://github.com/IcmVis/JLargeArrays)
+- JTransforms-3.0.jar      (https://github.com/wendykierp/JTransforms)
+
+Libraries used to build/test package
+------------------------------------
+
+ - asm-4.1.jar             (http://asm.ow2.org/index.html)
+ - asm-commons-4.1.jar     (http://asm.ow2.org/index.html)
+ - asm-tree-4.1.jar        (http://asm.ow2.org/index.html)
+ - cobertura.jar           (http://cobertura.sourceforge.net/)
+ - hamcrest-core-1.3.jar   (https://code.google.com/p/hamcrest/)
+ - jakarta-oro-2.0.8.jar   (http://jakarta.apache.org/oro/)
+ - junit-4.11.jar          (http://junit.org/)
+ - log4j-1.2.9.jar         (http://logging.apache.org/log4j/2.x/)

README.md

+Geomag Algorithms
+=================
+
+Geomag algorithms includes tools to fetch, process, and output geomag data.

build.xml

+<?xml version="1.0" encoding="UTF-8"?>
+<project name="Geomag Algorithms" default="jar" basedir=".">
+
+	<description>
+		Geomag algorithms includes tools to fetch, process, and output geomag data.
+	</description>
+
+
+	<!-- PROJECT PROPERTIES -->
+	<property name="etc" location="etc" />
+	<property name="src" location="src/java" />
+	<property name="lib" location="lib" />
+
+	<property name="build" location="build" />
+	<property name="dist" location="dist" />
+
+	<property name="instrumented.dir" location="instrumented" />
+	<property name="reports.dir" location="${dist}/reports" />
+	<property name="reports.xml.dir" location="${reports.dir}/junit-xml" />
+	<property name="reports.html.dir" location="${reports.dir}/junit-html" />
+	<property name="coverage.xml.dir" location="${reports.dir}/coverage-xml" />
+	<property name="coverage.html.dir" location="${reports.dir}/coverage-html" />
+
+	<property name="compile.debug" value="true" />
+
+
+	<!-- CLASSPATH -->
+	<fileset dir="${lib}" id="classpath.fileset">
+		<include name="JLargeArrays-1.2.jar" />
+		<include name="JTransforms-3.0.jar" />
+	</fileset>
+
+	<path id="classpath">
+		<fileset refid="classpath.fileset" />
+	</path>
+
+	<path id="classpath-test">
+		<path refid="classpath" />
+		<pathelement path="${build}" />
+		<pathelement location="${lib}/junit-4.11.jar" />
+	</path>
+
+	<path id="classpath-cobertura">
+		<pathelement location="${lib}/cobertura.jar" />
+		<pathelement location="${lib}/asm-4.1.jar" />
+		<pathelement location="${lib}/asm-commons-4.1.jar" />
+		<pathelement location="${lib}/asm-tree-4.1.jar" />
+		<pathelement location="${lib}/hamcrest-core-1.3.jar" />
+		<pathelement location="${lib}/jakarta-oro-2.0.8.jar" />
+		<pathelement location="${lib}/log4j-1.2.9.jar" />
+	</path>
+
+	<taskdef classpathref="classpath-cobertura" resource="tasks.properties" />
+
+
+	<!-- TARGETS -->
+	<target name="compile" description="Compile code">
+		<mkdir dir="${build}" />
+
+		<javac srcdir="${src}" destdir="${build}" source="1.6" target="1.6" includeAntRuntime="no" debug="${compile.debug}">
+			<classpath refid="classpath-test" />
+		</javac>
+	</target>
+
+	<target name="instrument" depends="compile" description="Cobertura intrumentation for coverage.">
+		<delete file="cobertura.ser" />
+		<delete dir="${instrumented.dir}" />
+
+		<cobertura-instrument todir="${instrumented.dir}">
+			<!--
+				The following line causes instrument to ignore any
+				source line containing a reference to log4j, for the
+				purposes of coverage reporting.
+			-->
+			<ignore regex="org.apache.log4j.*" />
+
+			<fileset dir="${build}">
+				<!--
+					Instrument all the application classes, but
+					don't instrument the test classes.
+				-->
+				<include name="**/*.class" />
+				<exclude name="**/*Test.class" />
+				<exclude name="**/*Test$*.class"/>
+			</fileset>
+		</cobertura-instrument>
+	</target>
+
+	<target name="test" depends="compile, instrument" description="Run JUnit tests">
+		<mkdir dir="${reports.xml.dir}" />
+		<mkdir dir="${reports.html.dir}" />
+
+		<junit fork="yes" printsummary="yes" haltonfailure="yes" failureProperty="test.failed">
+			<classpath location="${instrumented.dir}" />
+			<classpath refid="classpath-test" />
+			<classpath refid="classpath-cobertura" />
+
+			<formatter type="xml" />
+			<formatter type="plain" usefile="false" />
+
+			<batchtest todir="${reports.xml.dir}">
+				<!-- any class with the name Test in its name -->
+				<fileset dir="${src}" includes="**/*Test.java" />
+			</batchtest>
+		</junit>
+
+		<junitreport todir="${reports.xml.dir}">
+			<fileset dir="${reports.xml.dir}">
+				<include name="TEST-*.xml" />
+			</fileset>
+			<report format="frames" todir="${reports.html.dir}" />
+		</junitreport>
+	</target>
+
+
+	<target name="coverage" depends="test" description="Run Coverage tests">
+		<mkdir dir="${coverage.xml.dir}" />
+		<mkdir dir="${coverage.html.dir}" />
+
+		<!-->
+		<cobertura-check branchrate="34" totallinerate="100"/>-->
+		<cobertura-report srcdir="${src}" destdir="${coverage.xml.dir}" format="xml" />
+		<cobertura-report destdir="${coverage.html.dir}">
+			<fileset dir="${src}">
+				<include name="**/*.java" />
+			</fileset>
+		</cobertura-report>
+	</target>
+
+	<target name="jar" depends="compile" description="Build jar">
+		<mkdir dir="${dist}" />
+
+		<!-- Build the jar file -->
+		<jar jarfile="${dist}/GeomagAlgorithms.jar" basedir="${build}" excludes="**/*Test*">
+			<manifest>
+				<attribute name="Main-Class" value="gov.usgs.geomag.io.WaveserverMain" />
+			</manifest>
+			<zipgroupfileset refid="classpath.fileset" />
+		</jar>
+	</target>
+
+	<target name="javadoc" depends="jar" description="Run JavaDoc">
+		<javadoc destdir="${dist}/javadoc" packagenames="gov.usgs.*">
+			<fileset dir="${src}" excludes="**/*Test*" />
+			<classpath refid="classpath" />
+		</javadoc>
+	</target>
+
+	<target name="all" depends="clean,test,coverage,jar,javadoc" description="clean, test, jar, and javadoc" />
+
+	<target name="clean" description="Delete build and dist directories">
+		<delete dir="${build}" />
+		<delete dir="${dist}" />
+		<delete dir="${instrumented.dir}" />
+		<delete file="cobertura.log" />
+		<delete file="cobertura.ser" />
+		<delete dir="bin" />
+	</target>
+
+</project>

lib/JLargeArrays-1.2-license.txt

+JLargeArrays
+Copyright (C) 2013 onward University of Warsaw, ICM
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice, this
+   list of conditions and the following disclaimer. 
+2. Redistributions in binary form must reproduce the above copyright notice,
+   this list of conditions and the following disclaimer in the documentation
+   and/or other materials provided with the distribution.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
+ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
+ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
+(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
+ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
\ No newline at end of file

lib/JTransforms-3.0-license.txt

+JTransforms
+Copyright (c) 2007 onward, Piotr Wendykier
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice, this
+   list of conditions and the following disclaimer. 
+2. Redistributions in binary form must reproduce the above copyright notice,
+   this list of conditions and the following disclaimer in the documentation
+   and/or other materials provided with the distribution.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
+ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
+ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
+(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
+ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
\ No newline at end of file

lib/asm-4.1-license.txt

+Copyright (c) 2000-2011 INRIA, France Telecom
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions
+are met:
+
+1. Redistributions of source code must retain the above copyright
+   notice, this list of conditions and the following disclaimer.
+
+2. Redistributions in binary form must reproduce the above copyright
+   notice, this list of conditions and the following disclaimer in the
+   documentation and/or other materials provided with the distribution.
+
+3. Neither the name of the copyright holders nor the names of its
+   contributors may be used to endorse or promote products derived from
+   this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
+LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF
+THE POSSIBILITY OF SUCH DAMAGE.
\ No newline at end of file

lib/asm-commons-4.1-license.txt

+Copyright (c) 2000-2011 INRIA, France Telecom
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions
+are met:
+
+1. Redistributions of source code must retain the above copyright
+   notice, this list of conditions and the following disclaimer.
+
+2. Redistributions in binary form must reproduce the above copyright
+   notice, this list of conditions and the following disclaimer in the
+   documentation and/or other materials provided with the distribution.
+
+3. Neither the name of the copyright holders nor the names of its
+   contributors may be used to endorse or promote products derived from
+   this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
+LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF
+THE POSSIBILITY OF SUCH DAMAGE.
\ No newline at end of file

lib/asm-tree-4.1-license.txt

+Copyright (c) 2000-2011 INRIA, France Telecom
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions
+are met:
+
+1. Redistributions of source code must retain the above copyright
+   notice, this list of conditions and the following disclaimer.
+
+2. Redistributions in binary form must reproduce the above copyright
+   notice, this list of conditions and the following disclaimer in the
+   documentation and/or other materials provided with the distribution.
+
+3. Neither the name of the copyright holders nor the names of its
+   contributors may be used to endorse or promote products derived from
+   this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
+LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF
+THE POSSIBILITY OF SUCH DAMAGE.
\ No newline at end of file

lib/cobertura-license.txt

+The Cobertura ant tasks are licensed under the [Apache Software License,
+Version 1.1] [1]. The rest of Cobertura is licensed under the [GNU General
+Public License, Version 2.0] [2]. See below for [detailed explanations] [3]
+
+[1]: http://perl.apache.org/start/LICENSE.txt
+[2]: http://www.gnu.org/licenses/gpl-2.0.html
+[3]: http://cobertura.sourceforge.net/license.html
\ No newline at end of file

lib/hamcrest-core-1.3-license.txt

+BSD License
+
+Copyright (c) 2000-2006, www.hamcrest.org
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+Redistributions of source code must retain the above copyright notice, this
+list of conditions and the following disclaimer. Redistributions in binary form
+must reproduce the above copyright notice, this list of conditions and the
+following disclaimer in the documentation and/or other materials provided with
+the distribution.
+
+Neither the name of Hamcrest nor the names of its contributors may be used to
+endorse or promote products derived from this software without specific prior
+written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
+ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
+ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
+(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
+ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
\ No newline at end of file

lib/jakarta-oro-2.0.8-license.txt

+/* ====================================================================
+ * The Apache Software License, Version 1.1
+ *
+ * Copyright (c) 2000-2002 The Apache Software Foundation.  All rights
+ * reserved.
+ *
+ * Redistribution and use in source and binary forms, with or without
+ * modification, are permitted provided that the following conditions
+ * are met:
+ *
+ * 1. Redistributions of source code must retain the above copyright
+ *    notice, this list of conditions and the following disclaimer.
+ *
+ * 2. Redistributions in binary form must reproduce the above copyright
+ *    notice, this list of conditions and the following disclaimer in
+ *    the documentation and/or other materials provided with the
+ *    distribution.
+ *
+ * 3. The end-user documentation included with the redistribution,
+ *    if any, must include the following acknowledgment:
+ *       "This product includes software developed by the
+ *        Apache Software Foundation (http://www.apache.org/)."
+ *    Alternately, this acknowledgment may appear in the software itself,
+ *    if and wherever such third-party acknowledgments normally appear.
+ *
+ * 4. The names "Apache" and "Apache Software Foundation", "Jakarta-Oro" 
+ *    must not be used to endorse or promote products derived from this
+ *    software without prior written permission. For written
+ *    permission, please contact apache@apache.org.
+ *
+ * 5. Products derived from this software may not be called "Apache" 
+ *    or "Jakarta-Oro", nor may "Apache" or "Jakarta-Oro" appear in their 
+ *    name, without prior written permission of the Apache Software Foundation.
+ *
+ * THIS SOFTWARE IS PROVIDED ``AS IS'' AND ANY EXPRESSED OR IMPLIED
+ * WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
+ * OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+ * DISCLAIMED.  IN NO EVENT SHALL THE APACHE SOFTWARE FOUNDATION OR
+ * ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+ * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
+ * LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF
+ * USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
+ * ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+ * OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
+ * OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF
+ * SUCH DAMAGE.
+ * ====================================================================
+ *
+ * This software consists of voluntary contributions made by many
+ * individuals on behalf of the Apache Software Foundation.  For more
+ * information on the Apache Software Foundation, please see
+ * <http://www.apache.org/>.
+ */