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ghsc
National Geomagnetism Program
geomag-algorithms
Commits
3078267a
Commit
3078267a
authored
5 years ago
by
Rivers, Travis (Contractor) Creighton
Committed by
Jeremy M Fee
5 years ago
Browse files
Options
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update parse to use depends, clean up exception handling
parent
e707d036
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Changes
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1 changed file
geomagio/API/data_api.py
+158
-123
158 additions, 123 deletions
geomagio/API/data_api.py
with
158 additions
and
123 deletions
geomagio/API/data_api.py
+
158
−
123
View file @
3078267a
from
datetime
import
datetime
import
enum
from
fastapi
import
FastAPI
,
Query
,
Request
from
json
import
dumps
from
obspy
import
UTCDateTime
import
os
from
pydantic
import
BaseModel
from
starlette.responses
import
Response
from
typing
import
List
,
Any
,
Union
from
fastapi
import
FastAPI
,
Query
,
Request
,
Depends
,
HTTPException
from
obspy
import
UTCDateTime
from
pydantic
import
BaseModel
,
validator
,
ValidationError
,
root_validator
from
starlette.responses
import
PlainTextResponse
,
Response
from
fastapi.encoders
import
jsonable_encoder
from
fastapi.exceptions
import
RequestValidationError
from
fastapi.responses
import
JSONResponse
from
..edge
import
EdgeFactory
from
..iaga2002
import
IAGA2002Writer
from
..imfjson
import
IMFJSONWriter
from
..TimeseriesUtility
import
get_interval_from_delta
from
fastapi.exception_handlers
import
(
http_exception_handler
,
request_validation_exception_handler
,
)
DEFAULT_DATA_TYPE
=
"
variation
"
...
...
@@ -29,6 +36,7 @@ ERROR_CODE_MESSAGES = {
503
:
"
Service Unavailable
"
,
}
REQUEST_LIMIT
=
345600
VALID_DATA_TYPES
=
[
"
variation
"
,
"
adjusted
"
,
"
quasi-definitive
"
,
"
definitive
"
]
VALID_ELEMENTS
=
[
"
D
"
,
"
DIST
"
,
...
...
@@ -78,114 +86,79 @@ VERSION = "version"
app
=
FastAPI
(
docs_url
=
"
/data
"
)
class
SamplingPeriod
(
float
,
enum
.
Enum
):
TEN_HERTZ
=
0.1
SECOND
=
1.0
MINUTE
=
60
HOUR
=
3600
DAY
=
86400
class
DataType
(
str
,
enum
.
Enum
):
V
ariation
=
"
variation
"
A
djusted
=
"
adjusted
"
Q
uasi_Definitive
=
"
quasi-definitive
"
D
efinitive
=
"
definitive
"
V
ARIATION
=
"
variation
"
A
DJUSTED
=
"
adjusted
"
Q
UASI_DEFINITIVE
=
"
quasi-definitive
"
D
EFINITIVE
=
"
definitive
"
class
OutputFormat
(
str
,
enum
.
Enum
):
I
aga
2002
=
"
iaga2002
"
I
AGA
2002
=
"
iaga2002
"
JSON
=
"
json
"
class
WebServiceException
(
Exception
):
"""
Base class for exceptions thrown by web services.
"""
pass
class
SamplingPeriod
(
float
,
enum
.
Enum
):
TEN_HERTZ
=
0.1
SECOND
=
1.0
MINUTE
=
60
HOUR
=
3600
DAY
=
86400
class
WebServiceQuery
(
BaseModel
):
observatory_
id
:
str
id
:
str
starttime
:
Any
endtime
:
Any
elements
:
List
[
str
]
sampling_period
:
SamplingPeriod
data_type
:
Union
[
DataType
,
str
]
output_format
:
OutputFormat
@app.get
(
"
/data/
"
)
def
get_data
(
request
:
Request
,
id
:
str
,
starttime
:
datetime
=
Query
(
None
),
endtime
:
datetime
=
Query
(
None
),
elements
:
List
[
str
]
=
Query
(
DEFAULT_ELEMENTS
),
sampling_period
:
SamplingPeriod
=
Query
(
DEFAULT_SAMPLING_PERIOD
),
data_type
:
Union
[
DataType
,
str
]
=
Query
(
DEFAULT_DATA_TYPE
),
format
:
OutputFormat
=
Query
(
DEFAULT_OUTPUT_FORMAT
),
):
if
len
(
elements
)
==
1
and
"
,
"
in
elements
[
0
]:
elements
=
[
e
.
strip
()
for
e
in
elements
[
0
].
split
(
"
,
"
)]
query
=
{
"
observatory_id
"
:
id
,
"
starttime
"
:
starttime
,
"
endtime
"
:
endtime
,
"
elements
"
:
elements
,
"
sampling_period
"
:
sampling_period
,
"
data_type
"
:
data_type
,
"
output_format
"
:
format
,
}
if
query
[
"
starttime
"
]
==
None
:
now
=
datetime
.
now
()
query
[
"
starttime
"
]
=
UTCDateTime
(
year
=
now
.
year
,
month
=
now
.
month
,
day
=
now
.
day
)
else
:
try
:
query
[
"
starttime
"
]
=
UTCDateTime
(
query
[
"
starttime
"
])
except
Exception
as
e
:
raise
WebServiceException
(
f
"
Bad starttime value
'
{
query
[
'
starttime
'
]
}
'
.
"
"
Valid values are ISO-8601 timestamps.
"
)
from
e
if
query
[
"
endtime
"
]
==
None
:
endtime
=
query
[
"
starttime
"
]
+
(
24
*
60
*
60
-
1
)
query
[
"
endtime
"
]
=
endtime
else
:
try
:
query
[
"
endtime
"
]
=
UTCDateTime
(
query
[
"
endtime
"
])
except
Exception
as
e
:
raise
WebServiceException
(
f
"
Bad endtime value
'
{
query
[
'
endtime
'
]
}
'
.
"
"
Valid values are ISO-8601 timestamps.
"
)
from
e
try
:
params
=
WebServiceQuery
(
**
query
)
validate_query
(
params
)
except
Exception
as
e
:
return
format_error
(
400
,
e
,
format
,
request
)
try
:
timeseries
=
get_timeseries
(
params
)
return
format_timeseries
(
timeseries
,
params
)
except
Exception
as
e
:
return
format_error
(
500
,
e
,
format
,
request
)
format
:
OutputFormat
@validator
(
"
data_type
"
)
def
validate_data_type
(
cls
,
data_type
):
if
len
(
data_type
)
!=
2
and
data_type
not
in
DataType
:
raise
ValueError
(
f
"
Bad data type value
'
{
data_type
}
'
. Valid values are:
{
'
,
'
.
join
(
VALID_DATA_TYPES
)
}
"
)
# @root_validator
# def validate_times(cls, values):
# print("**************************************")
# # print(values)
# # print("**************************************")
# # starttime, endtime = values["starttime"], values["endtime"]
# # print(starttime)
# # print(endtime)
# # if starttime > endtime:
# # raise ValueError("Starttime must be before endtime.")
@validator
(
"
elements
"
)
def
validate_elements
(
cls
,
elements
):
for
element
in
elements
:
if
element
not
in
VALID_ELEMENTS
and
len
(
element
)
!=
3
:
raise
ValueError
(
f
"
Bad element
'
{
element
}
'
.
"
f
"
Valid values are:
{
'
,
'
.
join
(
VALID_ELEMENTS
)
}
.
"
)
@validator
(
"
id
"
)
def
validate_id
(
cls
,
id
):
if
id
not
in
VALID_OBSERVATORIES
:
raise
ValueError
(
f
"
Bad observatory id
'
{
id
}
'
.
"
f
"
Valid values are:
{
'
,
'
.
join
(
VALID_OBSERVATORIES
)
}
.
"
)
def
format_error
(
status_code
,
exception
,
format
,
request
):
if
format
==
"
json
"
:
error
=
Response
(
json_error
(
status_code
,
exception
,
request
),
media_type
=
"
application/json
"
)
error
=
JSONResponse
(
json_error
(
status_code
,
exception
,
request
.
url
))
else
:
error
=
Response
(
iaga2002_error
(
status_code
,
exception
,
request
),
media_type
=
"
text/plain
"
iaga2002_error
(
status_code
,
exception
,
request
.
url
),
media_type
=
"
text/plain
"
)
return
error
...
...
@@ -207,7 +180,7 @@ def format_timeseries(timeseries, query):
unicode
IAGA2002 or JSON formatted string.
"""
if
query
.
output_
format
==
"
json
"
:
if
query
.
format
==
"
json
"
:
return
Response
(
IMFJSONWriter
.
format
(
timeseries
,
query
.
elements
),
media_type
=
"
application/json
"
,
...
...
@@ -253,26 +226,26 @@ def get_timeseries(query):
data_factory
=
get_data_factory
()
timeseries
=
data_factory
.
get_timeseries
(
query
.
starttime
,
query
.
endtime
,
query
.
observatory
_
id
,
query
.
elements
,
query
.
data_type
,
get_interval_from_delta
(
query
.
sampling_period
),
starttime
=
query
.
starttime
,
endtime
=
query
.
endtime
,
observatory
=
query
.
id
,
channels
=
query
.
elements
,
type
=
query
.
data_type
,
interval
=
get_interval_from_delta
(
query
.
sampling_period
),
)
return
timeseries
def
iaga2002_error
(
status_
code
,
error
,
request
):
status_message
=
ERROR_CODE_MESSAGES
[
status_
code
]
error_body
=
f
"""
Error
{
status_
code
}
:
{
status_message
}
def
iaga2002_error
(
code
,
error
,
url
):
status_message
=
ERROR_CODE_MESSAGES
[
code
]
error_body
=
f
"""
Error
{
code
}
:
{
status_message
}
{
error
}
Usage details are available from
Request:
{
request
.
url
}
{
url
}
Request Submitted:
{
UTCDateTime
().
isoformat
()
}
Z
...
...
@@ -283,7 +256,7 @@ Service Version:
return
error_body
def
json_error
(
code
:
int
,
error
:
Exception
,
request
):
def
json_error
(
code
:
int
,
error
:
Exception
,
url
):
"""
Format json error message.
Returns
...
...
@@ -292,7 +265,6 @@ def json_error(code: int, error: Exception, request):
body of json error message.
"""
status_message
=
ERROR_CODE_MESSAGES
[
code
]
url
=
request
.
url
.
__dict__
error_dict
=
{
"
type
"
:
"
Error
"
,
"
metadata
"
:
{
...
...
@@ -300,33 +272,96 @@ def json_error(code: int, error: Exception, request):
"
status
"
:
code
,
"
error
"
:
str
(
error
),
"
generated
"
:
UTCDateTime
().
isoformat
()
+
"
Z
"
,
"
url
"
:
url
,
"
url
"
:
str
(
url
)
,
},
}
return
dumps
(
error_dict
).
encode
(
"
utf8
"
)
return
error_dict
def
parse_query
(
id
:
str
=
Query
(
None
),
starttime
:
Any
=
Query
(
None
),
endtime
:
Any
=
Query
(
None
),
elements
:
List
[
str
]
=
Query
(
DEFAULT_ELEMENTS
),
sampling_period
:
SamplingPeriod
=
Query
(
DEFAULT_SAMPLING_PERIOD
),
data_type
:
Union
[
DataType
,
str
]
=
Query
(
DEFAULT_DATA_TYPE
),
format
:
OutputFormat
=
Query
(
DEFAULT_OUTPUT_FORMAT
),
)
->
WebServiceQuery
:
if
len
(
elements
)
==
0
:
elements
=
DEFAULT_ELEMENTS
if
len
(
elements
)
==
1
and
"
,
"
in
elements
[
0
]:
elements
=
[
e
.
strip
()
for
e
in
elements
[
0
].
split
(
"
,
"
)]
if
starttime
==
None
:
now
=
datetime
.
now
()
starttime
=
UTCDateTime
(
year
=
now
.
year
,
month
=
now
.
month
,
day
=
now
.
day
)
else
:
try
:
starttime
=
UTCDateTime
(
starttime
)
except
Exception
as
e
:
raise
ValueError
(
f
"
Bad starttime value
'
{
starttime
}
'
.
"
"
Valid values are ISO-8601 timestamps.
"
)
if
endtime
==
None
:
endtime
=
starttime
+
(
24
*
60
*
60
-
1
)
else
:
try
:
endtime
=
UTCDateTime
(
endtime
)
except
Exception
as
e
:
raise
ValueError
(
f
"
Bad endtime value
'
{
endtime
}
'
.
"
"
Valid values are ISO-8601 timestamps.
"
)
from
e
print
(
type
(
id
))
params
=
WebServiceQuery
(
id
=
id
,
starttime
=
starttime
,
endtime
=
endtime
,
elements
=
elements
,
sampling_period
=
sampling_period
,
data_type
=
data_type
,
format
=
format
,
)
print
(
params
)
params
.
id
=
id
params
.
elements
=
elements
params
.
data_type
=
data_type
print
(
"
***********
"
)
print
(
params
)
return
params
def
validate_query
(
query
):
if
len
(
query
.
data_type
)
>
2
and
query
.
data_type
not
in
DataType
:
raise
WebServiceException
(
f
"
Bad data type value
'
{
query
.
data_type
}
'
.
"
f
"
Valid values are:
{
DataType
.
Adjusted
}
,
{
DataType
.
Variation
}
,
{
DataType
.
Definitive
}
and
{
DataType
.
Quasi_Definitive
}
.
"
)
if
query
.
observatory_id
not
in
VALID_OBSERVATORIES
:
raise
WebServiceException
(
f
"
Bad observatory id
'
{
query
.
observatory_id
}
'
.
"
f
"
Valid values are:
{
'
,
'
.
join
(
VALID_OBSERVATORIES
)
}
.
"
)
# validate combinations
if
len
(
query
.
elements
)
>
4
and
query
.
output_format
==
"
iaga2002
"
:
raise
WebServiceException
(
"
No more than four elements allowed for iaga2002 format.
"
)
if
query
.
starttime
>
query
.
endtime
:
raise
WebServiceException
(
"
Starttime must be before endtime.
"
)
if
len
(
query
.
elements
)
>
4
and
query
.
format
==
"
iaga2002
"
:
raise
ValueError
(
"
No more than four elements allowed for iaga2002 format.
"
)
# check data volume
samples
=
int
(
len
(
query
.
elements
)
*
(
query
.
endtime
-
query
.
starttime
)
/
query
.
sampling_period
)
if
samples
>
REQUEST_LIMIT
:
raise
WebServiceException
(
f
"
Query exceeds request limit (
{
samples
}
> 345600)
"
)
raise
ValueError
(
f
"
Query exceeds request limit (
{
samples
}
> 345600)
"
)
@app.exception_handler
(
ValueError
)
async
def
validation_exception_handler
(
request
:
Request
,
exc
:
RequestValidationError
):
data_format
=
str
(
request
.
query_params
[
"
format
"
])
return
format_error
(
400
,
str
(
exc
),
data_format
,
request
)
@app.get
(
"
/data/
"
)
def
get_data
(
request
:
Request
,
query
:
WebServiceQuery
=
Depends
(
parse_query
)):
try
:
timeseries
=
get_timeseries
(
query
)
return
format_timeseries
(
timeseries
,
query
)
except
Exception
as
e
:
return
format_error
(
500
,
e
,
query
.
format
,
request
)
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