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This is pdfTeX, Version 3.1415926-2.3-1.40.12 (MiKTeX 2.9) (preloaded format=pdflatex 2012.1.6)  1 AUG 2013 16:23
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**dataRetrieval.tex
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[][]$\OT1/pcr/m/n/10.95 http : / / nwis . waterdata . usgs . gov / nwis / help 
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[]\OT1/pcr/m/n/10.95 1  Location in cross section, distance from right bank loo
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[]\OT1/pcr/m/n/10.95 2                                                         
 Stream width, feet[] 
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[]\OT1/pcr/m/n/10.95 3                                                    Sampl
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[]\OT1/pcr/m/n/10.95 4 Location in cross section, distance from left bank looki
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[]\OT1/pcr/m/n/10.95 5                                         Temperature, wat
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[]\OT1/pcr/m/n/10.95 6                                         Temperature, wat
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\OT1/ptm/m/n/10.95 There are ad-di-tional data sets avail-able on the Wa-ter Qu
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[]\OT1/pcr/m/n/10.95 url_uv <- []\OT1/pcr/b/n/10.95 constructNWISURL[]\OT1/pcr/
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[] \OT1/pcr/m/n/10.95 First day of the discharge record is 2000-01-01 and last 
day is 2013-01-01[] 
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[] \OT1/pcr/m/n/10.95 The first sample is from 2000-01-04 and the last sample i
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[]  \OT1/pcr/m/n/10.95 Sample1 <- localSample[!duplicated(localSample[c("DecYea
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[]\OT1/pcr/m/n/10.95 Suspended sediment concentration (SSC) 1980-10-01 1991-09-
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