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function name changes and gene code simplifying

Loken, Luke Clifton requested to merge lloken/toxmixtures:master into master

Hey Laura,

I figure I should have another look at some of the updates I pushed this week. There are lots of changes to function names. Trying to use verbs for functions and nouns for objects. I also changed the gene_summary workflow. Now the workflow uses less functions to accomplish the gene_summary table that can be exported as an excel file.

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